Array 1 13697-12264 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML974127.1 Halorussus salinus strain YJ-37-H Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 13696 37 100.0 37 ..................................... GGAGAAAACCGGGAAGAAGCCTTGAGGGTCCTGAAAT 13622 37 100.0 38 ..................................... TCGGTCGGACCGATTGATGTACTTCCGGTTGTACAGCA 13547 37 100.0 35 ..................................... GCGGACCTCGCCGAGGAGGCCGGGTTCGCGCTCGC 13475 37 100.0 35 ..................................... TCGGGCGTGTCGATGAGTCGCGCCCAGACCCGCGA 13403 37 100.0 34 ..................................... GTCCCGAGGTGGACGATGAACGGTGAGATAATCC 13332 37 100.0 34 ..................................... ATGTCGTTCCACAGGCGCTCGTACTCTTCGCCGC 13261 37 100.0 35 ..................................... GAACGCCGCGACCATCAAAGCCCAGTTCGACCACC 13189 37 100.0 34 ..................................... ATCGAGCAAGCCCAGTGGTTCTACGAGGCCGCGA 13118 37 100.0 38 ..................................... TCTGCAAATCGCCGAATCACCCAGCCGGTCTTATCGTG 13043 37 100.0 36 ..................................... CTGGCACTCGCAGTCGTCACCGGCTACGTGGTGATT 12970 37 100.0 37 ..................................... AACTCTTGGCGAATCTTCTTCGAGCGCCACTTGACGA 12896 37 100.0 40 ..................................... GTCGTTGGACTCAGCCCGGAGAAGGTGAACTATAACACGT 12819 37 100.0 38 ..................................... CACGTCCGACCGACGACTGGAACCGCTTCGTCCTCCCT 12744 37 100.0 37 ..................................... GTATACAGCTATCTGTAAACTGTATGTCGATACAGCT 12670 37 100.0 40 ..................................... CGCGGACGCACATCGAGGTCGGCGACCAGAACGTCGTTGC 12593 37 100.0 36 ..................................... GGACCGGGGAAGCCCCGCTGTTGGACCCACTGGTCG 12520 37 100.0 35 ..................................... TCGGAGTCGGTACCGCGGCCGCCGCGAACGACGCG 12448 37 100.0 36 ..................................... ATGATGAGGAGCGACCCGTCACACGCTTCCATCGAG 12375 37 100.0 38 ..................................... TCGGAGAACTTCGAGCGCGTCTCGTGGGATGCGACCTT 12300 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 100.0 37 GTCGCAGAACCCAGAAAACCCAGCACGGGATTGAAAC # Left flank : GGACCGAATCGGCCGGACCGGTCCCATCGTCGCGGGGTCGGCGCTGTACGGCTTCGCCGTGGTGGGGGTCGGACTCGCCCCGACCGTGGCGACCGCAGGCATCGGGATGGTCGTCGTGGGCGTCATCGGCGCGCTGATGGCTCCGGCGACGATGGCGCTGGTCTCGGACCTCTCGCCCGAGGAGGGCCGCGGGACCGCGATGGCGGGGTTCAACGCCTGCGGGAGCATTGGCTTCCTCGCGGGCATCCTCGTCGGCGGGACCGTGGCCGACGAGTTCGGCTTCCTCGCGGCGTTCGTCGCGGCGGGTGCGCTGGAAATCGCCGTCGCCGCCGTGTCGATTCCAACGTTCCTCAGCATCGACCCCGAAAGCGCGAGCGCGTTCGGCGGGTAGCTTCGTGGACCTTTTTAAACTCTCTGTACAGCCCCGGTCCACGAAGTCGGCGTCGCCGACGACGCCAAGAGAAATCTTTTTGGGGCCTCTGGACCGATTTTCACCCCCT # Right flank : CCCTACGGCGACCTACCGCAGAACTTCGCGCGCCGCCTCGACGCCAGCCTCAGTGTCCACGTCCTCGCCGGTCTCCTCGAAGGCCTCGCCGATGGTGCGAATCCCGCGGAGAATCTGCTCGCTGGAGAGGTTGCCCATGTTGCTCACGCGGAAGATTTCCCCGCCGAGGTGGGCCTGTCCGCCCGAGATGGAGACGCCGCGCTCCTCGATGGCGTCGAAGAAGGCCTCGGGGTCCTCGCGGGTGTGGGTCGGGAGCGACACCGCCGTCAGGGTGTTCGAGTACTCCGTGGCGTCGTTGCGCTCGGCGAAGAGGTCCAGCCCCATCGCGGTGAACGCCTCGCGGAAGGCTTTGGACTGCTCGCGGTGGCGCTCGATTCGCTCGGGCATGCCCTCCTCGACGATATCCTCGACGGCGATTGCCAGCCCGCGGAACAGCGGGACCGCGCTCGTGAACGGCGTTTGGTGGGAGTCGGCCTTCCGGAGGTGCCAGTCTAAGTCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGAACCCAGAAAACCCAGCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 30040-30988 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIS02000012.1 Halorussus salinus strain YJ-37-H Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 30040 30 100.0 41 .............................. ATCGGTAGCCACGGCGAAGAGCTGTTTGAACGGAACATCGA 30111 30 100.0 37 .............................. TAAGGGAGAGAAATCAAGCGTCTCGCTCTACGACAAC 30178 30 100.0 35 .............................. GATGGAATCCCCACCAGACAGTCACGACGAACACT 30243 30 100.0 33 .............................. GTCCCTCCTCGTGAGGGGGCCGAGTCGTGAGGG 30306 30 100.0 37 .............................. ACGTCGTAGTAGCCCGCTCCGCCAACATTGCCGGTGT 30373 30 100.0 35 .............................. GTCGAGGTGAGTTGGCCGAACCCCTACCGGCGCTA 30438 30 100.0 34 .............................. ACTTTACGCTGGACAACCCCAACGCTTCGGCGCA 30502 30 100.0 34 .............................. CGGGGTAAGTCCGCCAAGTTGACCTCCCCGCCCA 30566 30 100.0 33 .............................. TCTCCAATGTCGGCTCAAGATTCGTCACGAACC 30629 30 100.0 37 .............................. GCCTTCGACCACAAACCAGACACTGCACGAAACGCGG 30696 30 100.0 35 .............................. ACAGGTTGCGTAGACAAACACGCAATGCCAGAACA 30761 30 100.0 35 .............................. GAGGGGTCAACACTGCTGATAACGGACGTTCCGGA 30826 30 100.0 37 .............................. GACCGCGCTGAGGCGGCGCTGGCCGACCGAGGCCATG 30893 30 100.0 36 .............................. CCGATCACCGACGAGGGCAAAGAGTACCTGATGAAG 30959 30 90.0 0 ..........TG.................T | ========== ====== ====== ====== ============================== ========================================= ================== 15 30 99.3 36 GTTCCAGATGCACCCTTGTGGGGTTGAAGC # Left flank : GTCAGCACGCGGTCCATTAGAAAGGCGGAGTCGATTTCAGTCACGATTGAGAACACGGAGAGAAAGAATGTGAAGGTCAGTCGTGGACAGAATGGATGTGAAAGTGGGGACACAAACTCTCAGACACCACAAATAACAGTACATTCGAGAAGGTAAATTCAAAGAGGACTGGCGGAGACAATACATGAGATAGAACAAGTCCACCCCGAGAAAACGAACGTTTCATACCATCTATAGAGTATTTAAATCAACTCGCAAAACCCACCAACCACGACGGTCTCCTCTCCTCGACCGTTCGAGGCGCGTAGCTGGTGGGACAAACCCGTTGTCTAGCTCTCAACTGTACCAACAACAGATGTCTTTCGCACCAACCTACGGTTCCCGAAGCATCGTCCTTTGTTTCCGTCGACCCCCCAGGGGTTCAGGGGGAATTGAGGGTCGACGGAAACACTTGTATGCGTTCGGCCATGAGAGCCTGTGAGGCCGGGAAATCCGGCATG # Right flank : TACGGTCGAAGCGACCAGTGCGACGAGCGTCGTGAGTGTTCCAATTGTACCACGTGGGATCAAGCGATAGTGGTGGCTCAGATCACGACTGTTCCCGACAGTCGTAGATGTTCTCTCACCAAAGAGTTTTAACCAAACAACATTTTTTCAAAGCTAATGGATGAGGACGATGACAAAAGTATCGTAGACCGGTACCTCGCCGCCGAGCGCGACCCCCACCGCGACCCGAAAACTCCGATAACGGGCCTGATGGTCCAGTACTACCACGTCTGTGAGCGCGAACTCTGGTTCATGTCCCGCGGGTTGGACATCGACCGTGAAACAACGAACATCCAGCGAGGTAGCTACGTCGACGAAAACAGCTACGACGACCGCCGGAAGTCCTACCAGATTAACGGCCGGATTCAACTCGACGTACTCGACTCCGGCGACGTGATGGAGGTGAAAGTCTCCTCGACGCTAGAGAAACCAGCTCGGATGCAGCTGCTATACTACCTCTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGATGCACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 33066-33228 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIS02000012.1 Halorussus salinus strain YJ-37-H Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 33066 30 100.0 36 .............................. AAACCCGGCCGTTAGCGAAGATAACCAGAATCTCTT 33132 30 100.0 37 .............................. TTCCAGATCGTGAACGCGCAGGGCGTCACGAACACGT 33199 30 93.3 0 ........T....................G | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 97.8 37 GTTCCAGACGCACCCTTGTGGGGTTGAAGC # Left flank : CGCTCGACCGGACCGTTGAACATCCGCGGCTTGAACGGAAAGTAAGCTATAAGACGCTTGTTCGAACCGACGTGTATAGCTTGAAGAAGCACATCCTTACCGGCGAACCGTATCGTCCGACGGAGCGGTGGTGGTAACGTGATAGTGATCGTTGTCTACGACGTGCCTGCCGAACGAACTCGGATCTACCGGAAGCTCCTGCGTCGCCGACTCGAACACCTCCAACAATCGGTCTTCTACGGCGACCTGACTGAAGGCCAGATAACGGGAATGAAAAACGAAATCCGAGACAAACTGGAAGGCGATGATTCCGTTATCGTGTTTGAGGCCGGATCGTCTGCTATCGTCGATTACGAAACCTTCGGTGATACCGACGACCCCGGCAGTCGCTTCACCTAATCTCCGTCGACCTCCCGGGGGTTCAGGGGGAATTGGAGGTCGACGAAAACACTTGTATGCGTTCGGCCACGAGCGGACGTATGGCCGGGAAATCCGGCATG # Right flank : GTGTGTGGTGTTACTGTTGTCCAGGTGGTCGGGTGTTGCAGCACGTCGATAGTCTGTTATAGCGGCTGCTGCGACTGGACGAATGCTAACCTCCATCAGTTAGCGTGAACTAAGGGATCGGCCCTTCATTTCCATATATCAAAATATAGTTTATTCAAACATAGCGATTTTGAGCTATTCTGGGTCTGTTGTGGGTTTCCAGTGGAGGGGACTACACAGAACACTACTGCGTAGATTGAGTGAAACGCTCTTCCGGTCGAAGACACAAGTATCAAACTAGAGGTCGCCGAAACAGGCAACCTGTAGATTCTAGTGGTGTTGAAACCGCAGGGCCGTTGTACTCGGGTTGAAATCCGGTAACAGAATCCCCAGATCTTCAGGCACGCGAGGAGGTTAACTTGATCAAGCCGTCATCGACATGGTTGGGGCCGGATACTGGGCGACAGTGGCGCTCTCGGAACGTCCCGACGCCTCGATTGAAGAGGCGACCGCACAGTCTA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGACGCACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 114161-113102 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIS02000012.1 Halorussus salinus strain YJ-37-H Scaffold7_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 114160 37 100.0 36 ..................................... TTTCTCGGAGTCTGAGCATCACCTGTGTTTTTACCT 114087 37 100.0 35 ..................................... GACCCGGACCGCGAAATCGTTGAGGGCACCGTCCG 114015 37 100.0 34 ..................................... GGCGACACGCTCCTGTGGGTCGTCCGGGCGGTCG 113944 37 100.0 37 ..................................... GGCTCGAGGAGAACCTCGACATCAACTGTGGAGTTCT 113870 37 100.0 37 ..................................... CGTACGCCGAGATGGAAATCGAGAAGGTGACGAGCGA 113796 37 100.0 36 ..................................... CCTTTCCGCAGGTAGCCGTCCTGCTGGGCAGCACGG 113723 37 100.0 35 ..................................... AATCGGACGACGAGACTGCCGACCACTCGGGAGGC 113651 37 100.0 36 ..................................... AGGACGTTTCGCCGCCCGGCGGTGAGGTCGCGCCAT 113578 37 100.0 36 ..................................... ACTGTTGCGGGACCGCGAGGAGGTAGACGACGCGGA 113505 37 100.0 36 ..................................... GGGGCGACCGTTCTCGGCGGGGCGGGATAGCGCGGG 113432 37 100.0 38 ..................................... GTTTCGAGGCCCGAACTGATTGACGGATGGTCGGTGAG 113357 37 100.0 34 ..................................... GTGGTGCCGAGGTTGACTTGCGCGCAACTCCCGG 113286 37 100.0 38 ..................................... TCGATACTCGGTTTGGCCGCCAGCACGTTCACCGCGCT 113211 37 94.6 36 .......................AT............ ATCGCTCGTCGCGTGGTTTGGGTCCAACTCTGCCGT 113138 37 86.5 0 ....T....G.............A....A......T. | ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 98.7 36 GTCGCAGAACCCAGAAAACCCACGACGGGATTGAAAC # Left flank : ACTTCGAGTACGAGGTGACGCGTCGAAAGGCAGTCCGCCAGCAAGCAATTCTCCTTCGGAAAGCAATCACCGGTGAACTCGACGACTACCACGCACTGGAGGTCACACACTGATGCGACTCGCAATTGCGTACGACATCTCCTCGGACGCGAACCGCCGTCGTGTCTATCGCACGCTTCAACGCTACGGCGCGTGGCAACAGTATAGCGTCTTCGAGGTTGACGTCTCGAAGGCCGAGCGAGTCGAATTAGAGGACGAACTCGAAGGACATCTTGAACCGAGTGACGGCGACCGTATTCGCATCTATCGACTGTGTTCGGCATGTATAGACGAAACGACTGACCTTGGATCCGAGCCACCTGACGAACAATCGAACGTCGTCTAAGGTCATCTTCGTGGACCTTTATTAAGTGTCCGTACAGCAGGGGTCCACGAAACACAGCCACTGTTTCGCGACAAGAGAAAGCATTATGAGGCCTGTGGCCCGATATTCACCCCCT # Right flank : TGAGGCTGGCGGACGCCCTCGCCGTCCGTGGCCGCATGTCACGACCTCATACGATGACCGAGGAGGTTGCGCTACACCAGCGAGGTCATCCAGATAACGAACCCGACGCTCGCGGCAACGAACCCGACGAGAAACACGAGCAACAGTCGCATCCAACGATGGACTGACGAACCACTCATCACACTACTCCTCGTCGTTTTCCAGTGCTTCGGCGTCAAGATCGCCTGCGAGATACGCTCGGCCCTTGTCGGTGATAGCATAGTATCCGGCTTCTTGGTCAACTTTTTCGAGGAGGCCGTGAGTTGTGAGTTTGCGCATTCGTCTCTTTACTGTTGAGTAGGCGGGCGAAACGATGTTCTGCCATTCAAGATTGAATGCCACGACTGCAGGAGGGAGGGCGGCATTAGTATCGGCTAGGAACTCCAAGATTGGGTCGTCATATTTGCCAGCCCACGAGGGGCGAGGTCGCATGTCCCGGAATTTTATATGCGCGCGTTTAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGAACCCAGAAAACCCACGACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 4 124290-125713 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIS02000012.1 Halorussus salinus strain YJ-37-H Scaffold7_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 124290 37 100.0 37 ..................................... TCTGCGAGTCCGCCACCGACCCACTGTCCGGCGTTCT 124364 37 100.0 35 ..................................... TACGATGCTCCCGAGTCTCCCACTGGTGACCTATC 124436 37 100.0 36 ..................................... GTCGTGATGGAGTGGACTACGACCGCCGACTGGGAC 124509 37 100.0 33 ..................................... ACGACTGCGTTCGTGATGCGGTCGGACCCCCGC 124579 37 100.0 35 ..................................... ACGTTCGATCGAGGGTATGCGTCTTGGTTCACCAG 124651 37 100.0 37 ..................................... CCGTTCACGCCGAAGGAGGTCCACGAGGCTCGGGACA 124725 37 100.0 35 ..................................... GCTCCGAGACCTCGTTCATCGGAGCGACGATCTCC 124797 37 100.0 35 ..................................... CGTGGCGGTTCTATCGCTACGGTTCGGACGACGAG 124869 37 100.0 37 ..................................... ATATCTTGACCCGTCGAGGCGACCGCGGTCGAGAGGG 124943 37 100.0 35 ..................................... GTCGGCATCAAGCAGTTCGAAACGCTCGACGGTCG 125015 37 100.0 35 ..................................... ACGGTGACGGCGACGGGTGGCGAGGCGGCGAGTGC 125087 37 100.0 36 ..................................... TAGTAGGGTTTTCTACAAGCCAGTTGAGGTGTGTAG 125160 37 100.0 35 ..................................... TTCTTCCCGGTTTCCGAGTTCACCACGTCCGACTC 125232 37 100.0 39 ..................................... AGTTCGTCCTTGAAGAACTCCCGTAACTCCATGAGCTTC 125308 37 100.0 33 ..................................... GATGGGAGCGAGTATCTGATTGACCAAGAACCC 125378 37 100.0 36 ..................................... TTCTTTGAGGGCTTTCGCGCCCGCGTCGGTCGTATG 125451 37 100.0 36 ..................................... TCTACTCCGAACTCCTCGAAGATGGCGTCTCGCCAT 125524 37 100.0 37 ..................................... ACGGACACGTCGGCTATCTACGTCCGCGCGACCAGCG 125598 37 94.6 42 .........................TA.......... TACCGGGACTGCAACCTGCTCGCCATCGCGTACGCTGTGTCG 125677 37 81.1 0 .C.G..................T.GT..A....G... | ========== ====== ====== ====== ===================================== ========================================== ================== 20 37 98.8 36 GTCACAGAACCCAGAAAACCCACGACGGGATTGAAAC # Left flank : CGCCGAGGTGGAGAATCCTGTCGTTGGTCTTTGCGGCGGTCCCCGAGATATTCTGCTCCCCCTTACTGTCGTATCGGCGGTACACGCCGACCGACTGGAGCAAACCTACGTTTTCAGTGACATCGACCAATCAGTCCAAGAGTGGACGCTCCCGCCAGTGACCGCACCAGTACCTGATGCGGCCGCTGAAACCCTGCGGTCAGTCGCGGCAACTGGTCCCTGCTCGCTGTCCACGCTCGCCGAGCAAACGGATAAATCGAAGAGTACAGTCGGGAGGCATCTCGACACGTTGGAAGAAATTGGTCTCGTTCGAAGCTGGATGGAAGGAAAGCACCGCCATATCGAAATTACCGATGCGGCTCGTCTCCTCACTCGGTGACGGACACCAGAATTTCGTGGACCTTTATTAACTGTCCGTACAGCAGGGGTCCACGAAGCAACCCTAATCTCTAACAGCGAGAGAAAAGGCTATGTTGCCTCTCCCGCGATTTTCACCCCCT # Right flank : CGGGGTTGTTGAGGATTTCGGCCCCTTTTCACTTTTTCTCGGCCGCATCATGACTAACCAATGACTGCAGCCGCAGGATAGTAGTCATTGGTTAGTCACATACCGTATTTGCACCCCTTTCATTCGACGAGATACTGGTAGCTGTTCCAAACGTGCCTCCGTCAGGTTGAGACGTGCATCTACCCTCCTCGCATAGGTCCCTCGTCTGAAATGCCGTCTTCCACTGAAAACGCGCATAACGACTTCCGCATCCTCGACGCGCTCACAGACTCTTCCTTCTGTTGCATCACGACACGCCAGTACAATCCTCCTCAGGTGTGTTTTGCCCCGGCCACAGACGTTGTTGGCGGTCATTTCCCTAGCCCACCCCGTCCGTATCTACCGCTGGACACCGCTGGAACTGACACACGCACAAGTAACCGTCCGGTGTCACCGCCACGAGGAGCCACTGTCGAGGGTGGGCTACATGTCGTGGCGGATCCTGTTCGCGTTTGACCGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAACCCAGAAAACCCACGACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [15,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 5 195859-194043 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIS02000012.1 Halorussus salinus strain YJ-37-H Scaffold7_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 195858 30 100.0 36 .............................. GACCTCGAAGAACTCGCGGAAGAAATCTTCCTCGGG 195792 30 100.0 35 .............................. AGGTCATCCGCGGGGATTTGAGTGCCGTCGTCGGT 195727 30 100.0 37 .............................. AGCACCAGTTCTTCCAGGCTATCCGGCTGCACGCGGA 195660 30 100.0 36 .............................. CTGCTCACTCGGTCGAGAGCCGCGAACTCGCTACTG 195594 30 100.0 37 .............................. GCCGATCACCGTGATCGGGTGGAAGTATGTTCGGCAG 195527 30 100.0 35 .............................. CGGCGCTACGATTTCCACGGCGAGGTGAACATCAG 195462 30 100.0 38 .............................. GATTCCCTCGGAACCGGGGTCGTAGGTCTTGAAATCGA 195394 30 100.0 36 .............................. ACCGAGTAGACGGCGAACCGGAGGACCACATCTTAG 195328 30 100.0 36 .............................. GACGAGACGGACCCCGACAACCCGACTCTCGTCACC 195262 30 100.0 34 .............................. TCGTGGGCCTCGTCGTTGATGATGACTGCCTCGA 195198 30 100.0 36 .............................. GGCGTCCTCGAATGGTCGAGTCGCCGTATCTCGGGC 195132 30 100.0 39 .............................. CCGTCCGTCTCGTCGAGGTCGCCCGGACCAACCGCCGTG 195063 30 100.0 34 .............................. TGCATCCGGGGCAGGTGTGGTCGGCGTCGAGCGT 194999 30 96.7 36 .............................T GGCGAAGTCATCGCCAGACTCGCCGAAACCCACGAC 194933 30 96.7 36 .............................T GACGAGGTCCGTGATATCCGCTCGCGGCCCGGAGGT 194867 30 96.7 37 .............................T GGACAGTCGTGGCGGTTAAGTGGTGCGTGCATCCCCG 194800 30 96.7 37 .............................T TTCGAAGAACTCACCGACAACGAGGGCCGCCACGCTC 194733 30 96.7 37 .............................T ACCGACCGCATGGTCGTCGTCATCCGGTCGCCGATGT 194666 30 96.7 36 .............................T CTTTTCGAGGGGCGATAAGCCAGATATGTTGAATCT 194600 30 96.7 35 .............................T GAGGTCGTGGACGGTGAACACCGGAGCATCATCGG 194535 30 96.7 38 .............................T TTCATCCAGCCACTCCTCGATTTCGGCTGATTCGAACC 194467 30 96.7 37 .............................T GTGGGACGGCAAGAACAGCGGGATGCGCGGCATCATC 194400 30 96.7 35 .............................T GTCTATTCCCGTCAAACCGGGAAGATGAACGTCTC 194335 30 93.3 36 ..........C..................T TCGAACAGCGACCCCCACGGTTCCGGCAACGCCTTC 194269 30 93.3 36 ..........C..................C GCAGTTCACTCCGCTGGCGAAGCGATTCGCTAAGAT 194203 30 93.3 35 ..........C..................C GACCCCGGCAACGACCAAATCGGCTGTTTCGATGA 194138 30 73.3 36 ......A.T.T......A..A.A...G..C GACACGTCCCACCCTCCCGAGGAGTCCCACGACTCA 194072 30 80.0 0 ........T.T...T..A..A....A.... | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 96.4 36 GTTCCAGACGAACCCTTGTGGGGTTGAAGA # Left flank : TCACGAAGATCTACGGCCACCCCGCTCGACTCAAGATTGTCGAGACCGCGCTCGCCAACCCCAACCGCGCGTTCAACGTCCGCGAACTCGCCACCGCATCCGACCTCGACGAGTCAACCGTCCACCAACACAAAGACCTCCTCGTCGAACTCGGTCTCCTCGACCGCGTTTCGCTCGGCCGCATCGACGGCTACCAGCTCGCCGACTCGGAGCTTGCTCGGGTCGGCCAAGAATGGCGAGACCTCCACCACGACCGACTCGATGCCCTCGAAAACGACACCGAAACCGCCATCGAAGACTTTTACGGCGTCGCAGAACCGTAGCCCGCAGTTGCTCGGCTCGATGCGTTACCTATTCCAGTCGAAGTCGCCTCACCGAGAACCAAATAACTCCTCTCGATCTCCGTCGACCCCCCGGGGGTTCAGGGGGAATTGAGGGTCGACGGAAACACTTGTATGCGTTCAGCCACGAGAGCCTGTGAGGCCGGGAAATCCGGCATG # Right flank : GAACACCGACATTGTTAACGTCCATCGCGCCGACGTGACCCGTTTCAGACGTACCGAGTAGAATAGCTTCGGGTGATTTGGTGAAGGTGTTCACCAACTGCTGTCAAAATCCATAATACTTGCATTAATAGTATTACAGTAGACGGGTATACTCCGCTTGCAATGCAATCGAAACTAGCTACCCTCGGACGGAACCACCCAAAGCTAACTAATGCAGTCTTTACCGCTAGCCTGCTCGGCGGACAACTCATACTGACCACCGACATCATCCCACTAGCGGACTCGCACCCCGGTCCCTAGATTAGATCAGACGCCGAAATTTCATCGCTCCAGTACCGCTCTCCATTGTAATCAATCGCTAGAATATTCCTTTCCAGTATTTCGTCAAGTTCTATCTCCGAGAGGTCCAGCGTATCGAGTTTGCTACTCGCTAAATAGCGAGTCTCCGAGTCAATATGCAGTTTGAGAGCAGAGCCAAGCCCATGGCTTGGCGATACAAA # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGACGAACCCTTGTGGGGTTGAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //