Array 1 753136-750938 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZNE01000001.1 Halomicrobium mukohataei strain ZP12-2 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 753135 30 100.0 37 .............................. TGCGTCGTCCGGTGGCCGTCAATAAATGTCGCAAGGG 753068 30 100.0 35 .............................. TCCTACGACCTCGTCGGCGTCAACGGCTGGCCCGA 753003 30 100.0 35 .............................. CACCCTACAACAGGTGAAATCTACCAGACAAAAGA 752938 30 100.0 36 .............................. TCACCCAAGCGCAAGCAACAGCTGATCGAGGACCTG 752872 30 100.0 36 .............................. GCGACGGCGGCCAGTTCCGCGAGGGCGGGAAGGTCC 752806 30 100.0 36 .............................. TGCGAGTGTTGCGGGGAACCGACTCGGGTAGGCCAG 752740 30 100.0 37 .............................. ACGGTTTCGCTACCACCATCGCCACCAGCAACTGCCG 752673 30 100.0 33 .............................. GACGAGTATGCCAACCGGCTCGTGAGCGGGCGC 752610 30 100.0 35 .............................. TGGTAGGCGTCGTAGGTGTTCGTGGCGAGCGTGTC 752545 30 100.0 36 .............................. ACTCACTGGATTATGACCCCTACAACGAGGGCGTCA 752479 30 100.0 37 .............................. GGATCTCGATCGTTGTAGTATCCATAGCTGCTATACC 752412 30 100.0 37 .............................. GAAGTAACGCAACTCCAGTGAGCGCTACTGAGAGCCC 752345 30 100.0 36 .............................. CCGATCACGCCCTGCCGATACTGGTAGTTCGCGATA 752279 30 100.0 34 .............................. TCGTCGGCCGGCTCGTCGGCCGACGTGGACTTGC 752215 30 100.0 37 .............................. AGTAGGTCTAATGTCTCTCTGTCGTCTATCAGCCCCG 752148 30 100.0 36 .............................. GCTCTCCGGTGTCACAGGTCAGGTCACGGTCTCCGC 752082 30 100.0 35 .............................. ACGGACAAGTCATCCACCCGCCAGTATCTCCCGGT 752017 30 100.0 37 .............................. AAATACGATCCTGCGGTGACGCTACGTCCGGGGCAGC 751950 30 100.0 36 .............................. CAGATGTGGGGTCTGTGGCCACAGTCTAACATCTCT 751884 30 100.0 35 .............................. CCTGATAACGGACTCTTGTAGGTCCGTTAGGTCGT 751819 30 100.0 36 .............................. AAAAATGAGTGACGTAGACATTCGGCAAAATGCCGG 751753 30 100.0 35 .............................. CAGCAGCGAAACGAGCCGTCCGTCCTTTTGAGACA 751688 30 100.0 38 .............................. GTCTAGCCCAGTCTGGTCGGGGTGGTCGGCAGGATCGG 751620 30 100.0 35 .............................. CACTCCTCATATGTCTGTTCGAGCAGCGGGACGTG 751555 30 100.0 37 .............................. ACCGTTGCCGCCGATCGGCAGCGAGCCGGTGATGTGT 751488 30 100.0 35 .............................. TCAAAGCGAGCCTCGAACGCGACGACGAAGATATG 751423 30 100.0 36 .............................. TCCTCCTTGTACCCACGGTCTTGCCGATCCATCCCG 751357 30 96.7 37 ........T..................... GACTGGCGTGTTGCCGTTCAGGCCGGCGTTGATCCCG 751290 30 100.0 35 .............................. CTCAGCAGCAGTCAACGGCATTTTATACACCTTGT 751225 30 100.0 35 .............................. CACCCCTTCCGGGGAGACGAGGAAACCCCGGACGA 751160 30 100.0 34 .............................. GTCACGCTGTCTGACGATATGGCTGACCAGGTGC 751096 30 100.0 33 .............................. CACTCCTGGGCGGCCTCATCGGCGGCCATCGTC 751033 30 96.7 36 .............T................ GTTGTGTGAGGTATGCGATGGACACCACCGATCACG 750967 30 76.7 0 .......................CCCGGCA | ========== ====== ====== ====== ============================== ====================================== ================== 34 30 99.1 36 GTTTCAGACGGACCCTTGTGGGATTGAAGC # Left flank : GTAGTTGTCCGTGAACCCGCTGATGACCTCGTGAATGAATTGGGTTCGCTCCTCGGTTAGCACTCCGCGCCGGTATTTCGTGGTGAGTATCAGGTGGTAGTGCAGGGAAAACGTCGAGTGCGCTCCCGAGTCGAGGTCGTACTCCATTAGGTTCAGTCAATATGATACTACCCTATTGCAAAAACATTGTGATTACGTGGGCCTGTGGGCTTTCTATCGAATTGTGTATGAGAACTGTGCAGCGTTAACGAGATGCTCGCGTCTCGTTCGCACACCAGAATCTTTGATTCTGGGGACGCTGTATCCCCTCCCTGCTCGCGCCTCCTGTTCGGTCGGCGCTCGCTGAGGAAGGGGGCTTAGCGCCTCAATTCAGCTAATACTGCCGGCAGTACAACCCCACTTCCATCGACCCCCCGGGGGTTCGGGGGCTATCGAAGGTCGACGGAAACGATGAAGTGTGAACGGCGAATAGAGGTGCATACGTGGCCTAATCGGCCATG # Right flank : CTGTCGCTGGGGACGATCGGCTCACTTCTTTCGGATCGTCCCGCCGCCGAGCCCCTCCCACTCGACTCGGTATCCGAGCGCCGACAGGACGGCGCTGGCGTCGTCGAGCCCGTACTCGTCGAGGACCGCCTCGGCGGCCGACAGCGACATTCCGGTCTCGATCTCGTCGTCGACCGCCGACAGCACGGCCGGCCTGACCAGCGTCCGCCCGACGCGCTCGTGGTCGGGAACGGATCGGTCCTCGACAGCGGCCTCGCTGACGCCGTGTTCCGCGGCCAGTTCGGCGAGCGTGAGCACGTCGGCGTCGGGAGTGAGTGTCTGGGGGAGCGTCGCGGCGTTTGCCGCCGTCAGTTCCGACTCGTATCGGCCCAGTGCGTCGCGAACGTCTTTGATCCGGACGGTGCCCGAGTAGGGGATGGCTCGGTGGTCGCGGGCCTCGATCTCCGCGCCGATATCGCCGGACTCGGTCCGTGAGGCCGACTGCTGGTCGCCGACCGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 59054-61983 **** Predicted by CRISPRDetect 2.4 *** >NZ_RZNE01000012.1 Halomicrobium mukohataei strain ZP12-2 Scaffold12_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 59054 30 100.0 35 .............................. GAGTGAGTGATGGCTCCTGAAAAAAAGAAACGTGT 59119 30 100.0 35 .............................. GGCGAGTAGAGCATCGCCACCAGTGTACCCGGAGT 59184 30 100.0 38 .............................. AGTTACTGGTAACCCCTCTGACACCACGTCCGCAGCGC 59252 30 100.0 36 .............................. TGACTTCTGGAGCGCACGACGGAGGTCGTCGAGCGT 59319 30 100.0 35 .............................. TGCCTTCTCAGTTTTCGCCTTCCAGTAGAAGTCTG 59384 30 100.0 36 .............................. AACATGAGCACGAACACTATCGACGCAGTCCGACGC 59450 30 100.0 36 .............................. TCCAGGGACGGCCCGTCCTCGATCGTCGGGTTGCGG 59515 30 100.0 37 .............................. GGCCAAGCCCAGCCCATGAAATGTTGAAGACTCCATG 59582 30 100.0 35 .............................. GCGATCTCACCGAGCTGCGTGTCACCGGGACGTGG 59647 30 100.0 37 .............................. TACAAGCACACGCACGGCCTCGTGTGTGTGGTCGTCA 59714 30 100.0 39 .............................. CAGCTGGTCGCTGGTCTCCGTCGCGACCGAGCGCTTCGA 59783 30 100.0 36 .............................. TACGAGCTGATCACCTGGAAGGCAAAGCTGGGTCTC 59849 30 100.0 36 .............................. GCAGCTGCACTGGTAGCAGGCTACCTGATCATCTAA 59915 30 100.0 36 .............................. GAGTTGTGTGAACTCGCTTTGCGTCTCGGTCGTTTC 59981 30 100.0 35 .............................. GCGCCGCCGGCCCCGAGGGTGTCGGTGACGATCGT 60046 30 100.0 35 .............................. TGCGAGTGCTGCGGGGAACCGACTCGGGTAGGCCA 60112 30 100.0 35 .............................. TTTGGACGCACCATGCTTGTGTGCCTCTTGATGAA 60177 30 100.0 35 .............................. AAGGTCAATATTGGCGTCAGAGGTAAGCACGTCGC 60242 30 100.0 35 .............................. AATCGTTAGCTCAAGACCCTCAGTGGGAAGGTCGT 60308 30 100.0 35 .............................. CACTCTGACGGTGCGGTATCGCGTAGACAGATACT 60373 30 100.0 34 .............................. TCGCGGTTGATGACCGCTGATTGGAGAGATGCTC 60437 30 100.0 36 .............................. CGGATCGTCGTGTCGCTCATGTCCATCCGCTCCTCC 60503 30 100.0 37 .............................. GCAGTGGTGGTCGTCACGGGCGTCCCGGACGTATCGG 60569 30 100.0 37 .............................. CTGACTTTCCGGGGTGGCCCAAAGTCCGCTCGAAGTG 60636 30 100.0 37 .............................. CTCATGGGAGGGCGGGGGCAGCTTATCCGCGAGATCT 60703 30 100.0 34 .............................. CGATACGCTCGGTCAATAGAGCGCGTTGAAGCGT 60768 30 100.0 37 .............................. GACCCCGAGATGCACGGCCACGCGGCCGTCGAGATCC 60835 30 100.0 37 .............................. GCGATTCGCGAGCTGCCAGCATCTTCGACCGTGTCGG 60901 30 100.0 35 .............................. CAGCCCGTAGCGGTCGGCGGCCTGCCGCTCGACGA 60966 30 100.0 36 .............................. ACACGCTTCAAGCTGTTCGTCCGACAACTCGCCTGA 61032 30 100.0 35 .............................. GGTCGGATTGCACTCCCGATCATTGCACAAGGGCT 61097 30 100.0 35 .............................. ACGCCGAGTGGGATCGCTACGAGCTCAACAGCATC 61162 30 100.0 35 .............................. ACAGCCCGGACGCCGTTGATGATCGAGGCGTACTT 61227 30 100.0 38 .............................. CCATCGCCGTCCTCGGTCCGGTTGCCGACGTAGAAGCC 61295 30 96.7 36 ..............G............... TCGAACTGGAGGGCGCGGGCGGTCGTGGTCTTCCCG 61361 30 100.0 35 .............................. AGCCATGCGGTTAGTCAGGCGCTTCTGAATGTCCG 61426 30 100.0 36 .............................. CCTCTCCTCTCGGAGGGTGATCGGCTGGATTTCCGT 61492 30 100.0 36 .............................. ATCACACGGACTCGGTGTTTCGCTAGCTCACGCAAC 61558 30 100.0 37 .............................. TCTTCTCTCCAGATCACCCACGCAGCGGCCCCTCCGG 61625 30 100.0 34 .............................. AGACAGCACCCGGCCCCGTCGTCTCGGTCCCCGA 61689 30 100.0 35 .............................. AGTATCAGCGAACGAGTTCGCGCCGATCTCGTCGA 61754 30 100.0 37 .............................. CCGTATCCGGATCGTTCGTCACTTCATATTCCGGATC 61821 30 93.3 37 ....T............A............ GATGTCGATTTTTCCGTATGACATTGTTTTAGATCTG 61888 30 100.0 36 .............................. GGAAGATGCACAGCTAGAGAGGGAACACGTCTCGGA 61954 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 45 30 99.8 36 GTTTCAGACGGACCCTTGTGGGATTGAAGC # Left flank : GAAGACCTCTCCCAGCCGCTGGGAGAGGTCTGGACTGATGGACTCCAAGCCTATCGAGAGATGGAGCGTGACCATCGGACAGTCGTGCACAAAGAGCGGTATGTATCGCTCGACGGCGTCCATATTAACCAGGCTGAGTGCTGTTTTCGCTCGTCCAGCCGTGGCTGCGGAAGTTCCGCGGCCTGTCCAAGCAGGGCTTGGAGCAGGCCGCTCACACCTTCGGCATCGTTCGGTTACTCACTCTAGCTGGGGAACCCACCGAGTCAATGATTGACTGCCTCGCTATCGGGGCTTTCCGCAGTTCTACATAAGAGCGAGACGGTCGAAGAGACCCCTCTGTCGCCGACTTCTCGCCACGTCGGTGGTGTCTCGCCTGCGTACTGACCGAGGAAGTTCGCGTTTCCATCGACCCCCGGGGGGTTCGAGGGGTATCGAGGGTCGACGGAAACGATGAAGTGCAAACGGCAAGTAGCAGTGTATACGTGGTCAAATCGACCATG # Right flank : CAAGAAGCCTCGACGAGACGAATCGTCGCCGGACTGGTTTCAGACGGCAAACTGAGATCGAAGCTAGACGGTATCGTCCGGCGACTTCCACAGGGCTTCCAGATCGTCTCGCAGATACCGGATCGATTCGTACCGATCCCGTTTTGCCGTCGCCAGCGCCGTGCGTACGATCTCGTCGAGTTCGGGCGGCACGTCGTCACGATCGGCACTCGGGGCTGGCGGTGGCCCGTCGTCGCGGACGATTCGCTTGCGGACGGCGAGGCGGCCGCCGCTCACGGGTGGCTCGCCGCGTAGCATCGCGTACAGCACAGCGCCGACCTGGTAGATGTCCGTGACGGCGTCCGGTTCGCCGAAGGTCTCGGCGTCGAACTGTTCGGGCGCGGCGAAGTGTCGGGAGAAGCCTTCCATCGAGTCGGCTCGGTCCAGCAGCTTTCTCGCGAGGCCCCAGTCGGCGAGCTTCGGCAGGTCCCAGCGTGACGGTGTCGTTTCGGTGAAGAGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //