Array 1 1531-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHH010000003.1 Listeria seeligeri strain FSL W9-0623 NODE_3_length_298485_cov_142.692180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1530 36 100.0 30 .................................... AGTAATAAACAATAAGCGACCGTCTGTGCA 1464 36 100.0 30 .................................... TAGTAACAGGGGAAGTGCTTTCAGCTAGAA 1398 36 100.0 30 .................................... TCTTTTGGATAATCCTCTAATTTGGCAATA 1332 36 100.0 31 .................................... CATTCTTCCGCTTTGTCGCTAGTGTAGGTGA 1265 36 100.0 30 .................................... TTCGCTTCCGGCACGGCCACATAAATGTAA 1199 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 1133 36 100.0 30 .................................... CAAACTTTTTTATTTCTTTTTCTGTGAATC 1067 36 100.0 30 .................................... TAAGAAGGGGATTAGGTAAATACATATATT 1001 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 935 36 100.0 30 .................................... ACGGACGGTGTAGGTTTTGTCAGTGATACC 869 36 100.0 30 .................................... TTTTGATATCCCGGAGACTATCGACAAAGA 803 36 100.0 30 .................................... TACCCGGAATTGGAGAATTTGGGTCATCAT 737 36 100.0 30 .................................... TATCTCCCAAATATAGAGGTCTTATCGAAC 671 36 100.0 30 .................................... CATGCTGATGTTTGGACTGATACGGAAGTA 605 36 100.0 30 .................................... TTCGTATAGATTAATTGCATCGGAGTCCAA 539 36 100.0 30 .................................... TATGGAAGAGGAATTTATTCATGAGGAAAG 473 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 407 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 341 36 100.0 30 .................................... TACGCAAAGACCAGATGCTAGCTTTATGCC 275 36 100.0 30 .................................... CGTTTGCGGATTGCCCTCGTTAACGATTCG 209 36 100.0 30 .................................... TCTAAGAAAAACAGAAAATAATCTTTTAAA 143 36 100.0 30 .................................... AATTTAGCAAACTTTTTGGCTTTGACCATT 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGTGAACATGATGTAGAAGTGAACGTCTTGGTTTTAGAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 185961-184830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHH010000004.1 Listeria seeligeri strain FSL W9-0623 NODE_4_length_252486_cov_125.554366, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 185960 29 100.0 36 ............................. ATATTCAAGGGCTTTTGGAGTAGTTACTTTGGTGAT 185895 29 100.0 36 ............................. ACAATAACAATTTGATTTTCATAATCATGTTTTTCG 185830 29 100.0 37 ............................. CTATTTGCCCTTTATAGTTCAAGTATCAAAGATAAGT 185764 29 100.0 34 ............................. GAATAAAGTCCTACTTTGACCCCAGTTTGACCTT 185701 29 100.0 35 ............................. GCCATAGGAGCGCCTACAATAGCATCGGTAAGAGT 185637 29 100.0 36 ............................. CTTTTTTTAAAACATAGATAACCTTCGTCGGAAATT 185572 29 100.0 34 ............................. AGAAAGTTGTCGGCTGCGTTCATAACCTCACGAT 185509 29 100.0 37 ............................. ATGTTTTCTAGGAATCACCTTTGTATTATGAGATTTT 185443 29 100.0 37 ............................. AAATGTTCAGCTAATTCGTTGTTTGTTGCCGTAGGAT 185377 29 100.0 35 ............................. TAGGTATATTCCCGAACGTCACGATTCATTTCTTT 185313 29 100.0 36 ............................. AAAGGTGGCGATTTTCTAGGCATGTGTTCCGACGAT 185248 29 100.0 36 ............................. TATTCAACTGAATCAGGACCTTTTTTTGCTCCATCG 185183 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 185117 29 100.0 35 ............................. ACAGACGGCAATGAATTTCAAGAACGATTTTTAAA 185053 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 184988 29 93.1 36 .......C....................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 184923 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 184858 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 18 29 97.1 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTTGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGGAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 197876-195769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHH010000004.1 Listeria seeligeri strain FSL W9-0623 NODE_4_length_252486_cov_125.554366, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 197875 29 100.0 36 ............................. CATATTCTCTAAACATCTAATTATCCTCCTATTTTT 197810 29 100.0 36 ............................. CTGTTTAGTGCTGTAAAGTGATACTGTATCGCCGTA 197745 29 100.0 37 ............................. TCAGGTCGTGTTCCGTTTGCGGAAGTATATCGTTGTC 197679 29 100.0 36 ............................. GCAGGTAATAAATCAAGTGTATCAGACATTGGAATA 197614 29 100.0 36 ............................. ATCTACATCACCTCCTCAATATGTTGTCACATCGTA 197549 29 100.0 38 ............................. TAGTTTTTGGGTTTATTAATAAGTCATTGTAGAGGTGA 197482 29 100.0 36 ............................. CCTAAAATGTCAGCAAAATCATCTACGCTGGAACCT 197417 29 100.0 35 ............................. GTAACAACGGTGATAAGTCGCTGTAACAGCTCGTT 197353 29 100.0 36 ............................. AATAATGCATGTGATCCAGTGACATCCAAAAATGCC 197288 29 100.0 34 ............................. TGGCATTAAAGGCATACGAGAGTCAGATGCAATG 197225 29 100.0 37 ............................. TCTGTAGTGTGAAAATGATGTGAGGAGCTGGCTAGAC 197159 29 100.0 36 ............................. AACGCTTTCGTGCGGTGGCATTACGATAAGACCAGG 197094 29 100.0 34 ............................. CAATAAATGCAGTAATAACATCCATTTCCGATTT 197031 29 100.0 37 ............................. TTCTTATTATCAATATTTTCAATACTTACCAACTGTC 196965 29 100.0 36 ............................. TATTTTTTTAATTAACAATCGCTTTGATGAGTGCGC 196900 29 100.0 35 ............................. CCAGATAAAACCTGGGATACCTGCTTTTTGATGCC 196836 29 100.0 37 ............................. GTGGTAACAGCGTTTTTGTTGCCGATAGGTGCGCTCC 196770 29 100.0 36 ............................. TGTTATCTACTCCGTACTGTTCAATCAATGGCAACC 196705 29 100.0 34 ............................. AAATTTGAAGAAGTAAAAGAACCGGATGAATTGG 196642 29 100.0 37 ............................. GAAGGGGGTAGCGCTGGGAGACAGTTGTTGTTACTGC 196576 29 100.0 35 ............................. TTTTACTGACCTCGATTCGCTTTTAATTTTTCACC 196512 29 100.0 36 ............................. ACCGTAATTAATAAAGGCAATGCCGCAATTATGGCA 196447 29 100.0 35 ............................. ATCATTCTCATGTGTTTTAACAGGTTTTAGCTTTT 196383 29 100.0 36 ............................. TCGATTAGCGCAAATATAAGCTTCACACCTGCGTCA 196318 29 100.0 35 ............................. TCGTGATAAACCTTTATCACAAAACCGCCATCGCT 196254 29 100.0 35 ............................. CCCATTAAAATAGCAGAAAACAGCACCGCAAATGC 196190 29 100.0 36 ............................. AAAGTCTTTCGCAAAGTGTGCGTCCCCACGCGATCA 196125 29 100.0 34 ............................. GTTGAAGAAGTGGAGGGAAAATAAATGACTTTGA 196062 29 100.0 39 ............................. CTAATAGTAGACGATTATTGGGACGATGTATTCCGACAT 195994 29 96.6 37 .......................A..... TCTTATTTTTCCTCCTCTAAGTATTTAAAAATTACCG 195928 29 100.0 38 ............................. CGAGCTATTGTATCATTTTTGAAGTAATCTAGCTATAA 195861 29 96.6 34 ........................C.... AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 195798 29 86.2 0 ........C....C..A...........G | T [195771] ========== ====== ====== ====== ============================= ======================================= ================== 33 29 99.4 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCAGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGAGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAAAAAACACTAGTATTTTCAGTGTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACTGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCAGAAAAATATGGAGATTTATTTGGTAGTAATATGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 204706-204099 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHH010000004.1 Listeria seeligeri strain FSL W9-0623 NODE_4_length_252486_cov_125.554366, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 204705 29 100.0 36 ............................. TAAAACTTCTCAAACCAATCTAATTTACTCTGTAGT 204640 29 100.0 36 ............................. AGTGAAGGACATGCCCACATGGATGCAAAAAGGATG 204575 29 100.0 36 ............................. TGATACACAGCCTACTAATGCAGCTATTATCAAAAC 204510 29 100.0 34 ............................. TAATTTGTTCGGCTTTTTCAGCTCGTTGTTGTGC 204447 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 204384 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 204320 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 204256 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 204192 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 204127 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ==================================== ================== 10 29 99.7 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //