Array 1 238508-241226 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066539.1 Halomonas venusta strain 4743 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 238508 28 100.0 32 ............................ GTCCAGTAGCTGGTCGGCAAACGAGTCGAAGC 238568 28 100.0 32 ............................ AGAAGAAGAAACGCCCGCCCCTAAGCAGAAGC 238628 28 100.0 32 ............................ CAATCACGGCAGCGGGAAGAGGAAAGCAAGGT 238688 28 100.0 32 ............................ TGGTGCTAGTGATTAAATCATTGGGGGCAGTT 238748 28 100.0 32 ............................ TCCAACGATTGCTACAGCACCGTTATTGGCTT 238808 28 100.0 32 ............................ AAAGGGAAATCACTGGCCTGGTGCTAACTATG 238868 28 100.0 32 ............................ TTTGGGCTATAGCCACGAGGACGGCAGCACAA 238928 28 100.0 32 ............................ AAAGATTGCTCAACGAGCAATCAAAGCAAAAA 238988 28 100.0 32 ............................ ATCAAGACCGGAGAACTCTAAATAAAAGTAAC 239048 28 100.0 32 ............................ AACCGCGTGCGCGGGTTCAACGAACTGTTCTC 239108 28 100.0 32 ............................ ACAACCAAGCCGACGAGCTGGCGAACCTGCTA 239168 28 100.0 32 ............................ TTGGCCCATTTTGGGGAGTGACTGGCTTTCGT 239228 28 100.0 32 ............................ AGTTTCGCCATGAAACCAGCCGAGAGCAAGAC 239288 28 100.0 32 ............................ TGCTGCTCGGTCTTGTTATTCGATAGCACCTG 239348 28 100.0 32 ............................ AGTGGCAAGAAAGTAAGCTTTACGGTGTGTTT 239408 28 100.0 32 ............................ TCCGCGCCCAGGCCCTCCAACGCAAGATGGAA 239468 28 100.0 32 ............................ CGTGGAAACGAAATCGTCCTGCCCAGCGTGAA 239528 28 100.0 32 ............................ TTGCCGACGCCAACGACCGCTTCTTTCGTCTG 239588 28 100.0 33 ............................ GCGATCGTTTTATGGACAAAGTACGGACTCAAA 239649 28 100.0 32 ............................ AGAAGTGATTTATCGAGCCAACCCGCTACCTT 239709 28 100.0 33 ............................ CTTTCATGTGATGGCCGTCATGCTCACTGCTAA 239770 28 100.0 32 ............................ ATGCCGGGTGATCATGCACCCGGCCGCAGGTA 239830 28 100.0 32 ............................ TCGACCCAATCCCCCCAAATACGTTCTCCTTC 239890 28 100.0 32 ............................ TGGCTGATGGGTAGTGAGCGCACCATGAAAGC 239950 28 100.0 32 ............................ TCATCTAGCAGCGCGGACTGATCAACCATCTC 240010 28 100.0 32 ............................ TGCAGCCGCTCAACGCGAACCTTGGTAATTTC 240070 28 100.0 32 ............................ CTGCGCAAGTTTTGGCAAATGGCCCGCTTCAC 240130 28 100.0 32 ............................ TTCGGCGCGGTGGTTTTACGTGTTGCCATGTG 240190 28 100.0 32 ............................ AAGAGATGACTGCCGCCGATCGCAAGCGGATG 240250 28 100.0 32 ............................ ACGTTGGAAGCATCCAGCATGCCGATCTCTCT 240310 28 100.0 32 ............................ AGCACCAGGCGCTTCCATTCGTTGCCGAAGAT 240370 28 100.0 32 ............................ GCTGAAATCCCAGTCAACGACTCTGAATTCGC 240430 28 96.4 21 ...........................G TGAGATTGCTAGTCCTAGTAT Deletion [240479] 240479 28 100.0 32 ............................ TGCATAGTCCATTTCGCACAGCACAACCCTGG 240539 28 100.0 32 ............................ AGCGAGCAATACAGGTAATGCGCGGCTTGCTC 240599 28 100.0 32 ............................ AGCACGTACTCCAGGTCGTCGATGCTCAGTTT 240659 28 100.0 32 ............................ TGCCCGATGATCGCCGCCGTAAACAGGAAGGC 240719 28 96.4 32 ............T............... AGAACCACCTAGCGCTGGATGAAGAACTAGAA 240779 28 96.4 32 ............T............... TGCTCTTCAAGATAGTCGTGTCTGTCGTACAC 240839 28 96.4 32 ............T............... ATTTTCCATTATTAGACCAAGAGAAAACACAA 240899 28 96.4 32 ............T............... TTACACGCCCAAGCGGCGGCTTTCACCTCACG 240959 28 96.4 32 ............T............... AGTGACTGGTTTCAAGAGCGGTGGCCTACCCC 241019 28 100.0 32 ............................ TAGGTACACCACGAGATGGGATGAATTACCCG 241079 28 100.0 32 ............................ GTGGTCGCTGGGGGCGCGGTGTCGTTCGGAAA 241139 28 100.0 32 ............................ TCTAATGTTAGATTTGATTTAACCGGGCCAGA 241199 28 78.6 0 ..................C...TT.GTG | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.1 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGCGGCTGAAGCAACTGATGGGCGCTGACTGGCTAACCGGTATGCGCGACCACACGCAAGTCAGTGAGCTGCTTGCCGTGCCTGAAGGAGCGAAGCATATCAACGTGGCGCGCAAGCAGTTCAATACGGGCAGCCCAAGCCGCGCAAAACGCTATGCTAAACGGCATAACATCACAGAAGATGAGGCACGGCAGATCTATGCCAAGTTGGCTGAACGACGTATAGAGCTTCCCTTTGTGCAGATTAATAGCCGTTCTACCCAGCAGCGATTCAGCCTGTTTATAGAACACGGCAAGCCTCATGAAAACGCAGTAGCGGGTGCCTTTAACCACTATGGTTTAAGCAGTAACGCTACCGTGCCGTGGTTTTAACCCTTTTTTCTAACGTGAAAATTGGCAACCAATAATCAACCACTTAGCGGTGTCGCTCAAAAAAGGGTGATACCGCTTTTTTTGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGATATGCTCTA # Right flank : GCTACCTGAAACTGGTATCGCTGTGCAGCGTTTTCGCGGGTGCGCTAACGCTTACGCCGCGCTACTCGAAATGTGCATTACCTTCATTAATTCGTAGGTTAGATGTTGCCGCCCAGACAGTTCAGTGTTTAGTCGGTGTGAATGCTCTCTCAGTTTCGGCGTCATCATCACAATGGTGCTTTAATTGTTAAATATGGTGAGGAAGAGAGTGTTCAAAAATAAAACTGCTTTAACATAATGATTGGGGTGTGTTTCGGTAACTGCCATCTAGAGGATATTACGTCGTGGAAAACTTTCTTGAGCAATTTGGAGCTTACGTTCCTTTGATTATCAATGCCGTGAAAGCATTGTTGGTATTGATTGTGGGCTGGATGGCTGCTGGGATCGTCAGCAGCTTAGTGCGTAAGCGGGTGAATGCGATACCGCGTATCGACCCTACTCTGGGCAATTTCCTTGCAGCCTTGGTGAAGTGGGGCATTCTACTGGTTGTATTTATTACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //