Array 1 103877-102879 **** Predicted by CRISPRDetect 2.4 *** >NC_017273.1 Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 103876 37 97.3 37 .................................T... AACTGGGGCGGGCTAGGGAGGCCCTAGCCGCCGTGGG 103802 37 100.0 35 ..................................... GAGTGGCTGGTCCACTACGACATTCCCATGACCTG 103730 37 100.0 38 ..................................... TGGGCGGACCGGGCCATGACCATCGCCATACTGGGGCA 103655 37 100.0 36 ..................................... GGCCCAGACCATGAGGTCGTGCAGGGCCTCCTCGGG 103582 37 97.3 38 ...........A......................... CGGGGCTCACCCCCCAAACCCCATACCCCCCCGCAAAC 103507 37 100.0 36 ..................................... GGCCTCCACGTAGTCGGCCACCTCTTGCCCGAACCT 103434 37 100.0 37 ..................................... CGTCCTCGTAGCCCCGGTACGGGGGGTCGAGGAAGAC 103360 37 100.0 38 ..................................... GGCCTGCGCGCCCCTGTAAACGTTCACCGCATCGGCCA 103285 37 100.0 38 ..................................... TAGGGAATGCACTCCAGGCTGTGGGCCTCCAGAACCTT 103210 37 100.0 35 ..................................... CCCCGATGCCGGTGAGGCGGTCGAAGTCGAGAGCG 103138 37 100.0 38 ..................................... TTGCACGCCGGGCACATTTCCTCGCCGCCGAAGGCGCT 103063 37 100.0 36 ..................................... GAGGAGGTCCCCCTCCTGTACGTCCCCGTTGGTGAG 102990 37 100.0 38 ..................................... TACTTCTCCCGGATGAGGTCCACGTTGCTCCCGGGCCA 102915 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 99.6 37 CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGCAAC # Left flank : TCCCCCGTCCCCAGGTAGGGGTAGCGCCACAGCCTCAGGGGAAGCCGCTTCCCCAGGGCCGCCGCCTTCGGAAGGACCTCCACGGGGTCCAGGAGCCTCCGGCCCCTGAGCAACTCCCCGTAGCGCCGGGCCGCCCGGGCCACCCGGGCAAGCCGGGGGGAGGCCTCCTCCGCCAGGCGCGCAAGCGCCTCCTCCCCCTGGCCGGAGGCCTGGGCGAGCAAGAGGAGGGTCCTCACCGGGCCCTCGAGGGCCGCGGCCAGCCCCTGGGGGTCCTTCGGGGCGAGGGCCTCCCGCACCGCCTGCACCAGCAGGCGGCGGGCCCGGTAGGGGGAGGCCACCAGGAGCCCCCCGTCCCTTAGGAGCTCCCGGGCCAGCCCGGCCAGGGTGCGGTAGGGAACCCCCAGCCTGCGGGCCACCGCCCGGTTGGGGGTGACGTGTATCAGTCCTGGGTCCTCGGCGCGCACACCTTACCTCCTTTCTTCGCTATTTTCGCCTGCCTT # Right flank : TCCCCCCCTGACTGGGTCCCTCTGGAAGCCGGTTTTCAAGGTTCCCCGCGCGAACCTGGGTTGAGAGGGCTTCGCCGCGCGCCGTGATTATACCCCTTCCAACGCCAGGAAACCCCTTCCCCAAGGGCCTAACGCCCCCTGCGCGAACCCCCCGGGGTTTGGGCGCCCGCTTGGGGTCCGCGCAGGACGGGCCGGGCCTCCACGTAGACGGGGTAGGGGTCCTTCTGCCGCTTAGGGTGGCCCAGGCGGGGCGAGCGCCAGAGGGCCACCTCCGGGGGCCAGGCCCTGGGGTCCTGGAGGGCCAGGGGGGCCTGCAGGAGGAGGGCGCGAAGGGCCTCCAGGGAGACGGGGTGGCCCGGAGTGGGGAGGAGGAGGCTCGGCCGGCCTTCGGGGTCGTGGACCCCCGCGGCCCGCACCCCGTCCGGGGCAGGGTAGAGGAGGAAGAGGGGGACCGCCTCCCAGGCCAGGAGGGTGGCCACGGGGTGGATGCGCACCTTCTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTGCAACGTAGCCAAGCTGTGAAGCTTGGATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 117311-116844 **** Predicted by CRISPRDetect 2.4 *** >NC_017273.1 Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 117310 36 100.0 36 .................................... CTACTCCCGGTTTGTACGATGGCGGCGTCGGTGATA 117238 36 100.0 36 .................................... TAGTCCGCGTCCTCCCTGGTGGAAATGGCGAGGTCC 117166 36 100.0 35 .................................... GAGTATGCCTAGGAAGGACGGGAAGGACGAGACCC 117095 36 100.0 36 .................................... AGCTTACCGCCCCCCCTGTTCCAGAGCTTCGTGTAG 117023 36 100.0 36 .................................... CTGGTGAGGCTCTTTCCTCTGCAGGTTTTTGGAGGT 116951 36 100.0 36 .................................... TTCCTTTGGAGGTGAAGGATGCTCGCGGCAGAGAGG 116879 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ==================================== ================== 7 36 99.6 36 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : GCCTACGATACCCCCGATGACCGTCGCCGGGCGCGGCTTGCCAAGCTGCTCAAGGGCTTTGGCGAAAGGCGGCAGTACTCCGTGTTTGAAGCCCGGTTGACCCGGGAGCAGTGGGCCCACCTCAAGGGCAAGCTGGAAGCCCTGGTCAACAAGGAGGAGGACGTTTTAGCGGTGTACTTCTTGCCCCCGGAGGCGGTGGGACGCACCTGGCGCATCGGCCACGAGGGGTTGAAGCGCCTCGAGGACCCCGACTTCGTTTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCTGTGCCAAACCGGGGGTTTTTGCTGTACAGAAGGCTGTTCTTTTGAATTGCATACTTGTTCTTTCCCCTCGTGCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCTTCTCTTCCAGGTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : TGTCTTGCCTGTCAAGCGACCTCTTGGTATGGCTGGGTTGCGTAGTACTCCCTGAGCCTGCCCATCATCCGCCTGAGGAGCTTGTGGGCCACGGCCACCAACGCCTGCTTCTTTCTCTTTCCCCGCGAGAGCAGGCGGTGGTAGAAGGCCCGCATCTCCGGGTCATGGCGCACTGCCACCAGGGCGCCCATGTAGAGCTTTCGCCGCAGGAGGGGGGGTCCTTTCTTGGAGAGCCGACTCCTCTCCACGCTCTTTCCCGACTCCTCCCGCTCGGGGATCAGCCCCGCGTAGGAGGCCGCCCTCTTTGCCCGGCCCCAGAGCTCTGGGGGCAGGAGGGCCAGCACCGCTGCCGCCGCCAGGTAACCCCATCACGGGGTCCAGAAGCGGAGGGCGGGAAAGGCCCCCAGGTCCCGGTAGTTCAGCGTCCAAACGGGCGCCCCAAGCCGCAGGGCGAGGAGGGCCACGCCCGCGTCCTCCAGGGTGCCCCCCCATCCGGGCAG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 3 128169-128930 **** Predicted by CRISPRDetect 2.4 *** >NC_017273.1 Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 128169 36 100.0 36 .................................... ATTAGTCACGGCCCAAATGGCCGACGGCGACTACGA 128241 36 100.0 38 .................................... CCGTTTAGAAAGCCAGCTTCTGAGCGCCCCTGAGGGAG 128315 36 100.0 37 .................................... TCCCGTGGCCTCCAGGGCCTCGGCTCCTCCCTCGGGG 128388 36 100.0 37 .................................... AACTCCCCGGCGAGATGGGCCACAGAGCGAACCCCTT 128461 36 100.0 37 .................................... CACTACCTAGTGCACCAGATGCACTAGTCTCGGGGCT 128534 36 100.0 36 .................................... GCCGTGCGGCGTGCCGGGTGGTCTACGGCCCCCCGC 128606 36 100.0 36 .................................... ACTACCAAGGGGCGAGAGGAGAGATTTGGTTCGGGA 128678 36 100.0 35 .................................... CCCGTAGCCGCCATTTGCTTTCCAAGCCACCACCT 128749 36 100.0 38 .................................... TTCTCGCACCCCTCCTCCTCGGCGCGTGGGTCCACCAC 128823 36 100.0 36 .................................... CAGATCTACCTCGGCCCGGGCGCCCTCGTGGACCCC 128895 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 11 36 100.0 37 GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Left flank : CCTTACAACCCAAAGGAAGAGGCCGCCTTGCGGGAGCTTTTTGAGTTGGACCTCGAGGTGGCAGGCTTCCGCAACCTGCGCTTCCACCGGGTACAGGCGGGGAAGGGCTTTTTCCCCGGTTTCACGGGTGAGGCGACCCTGAGGCTTTGGAGCCAGAGCCTCGAGGCCCAGGAGGCCCTGGGGCGCCTCCACGCCCTAGCCTTCTTCAGCGGCGTGGGGGCTAAGACCCCCTACGGCATGGGCCTGGCAGTCCCCCTCTAGCGAGCGCGAAGGCCACCTTATGCAAACCCCCGATGCCATATCGGGGGTTTGTGCTGTACAGAAGACTGCTCTTTTGGATTGCATACTCGCCCTTTCCCCTCGTTCGCGTGCGCACTCGTCCTGGAGAAGGAAAGTCCCACTTTAGTCCCACGGCGCCTCCCCTAGCTTGACGCATAATCCCCCCGCGTGCGAAAATGGCCTCAAGACCCCCCGCCTGGAGCCGCTTCCTGGAGGGGGCC # Right flank : CCCGAGATAAAAGCCGGTCGTGTAAGGATTTATGTGTAAGGGTCCGTGTTTAATAGGGGGGCACACCTTAGCACGAGGAGGTGCCCCGTGGACCAGGATACCTTGCGGATCTTGCTGAGGGAAGCGGTGCGGGAGACGGTGGCCGAGGTTCTGCAGACGGTTCTGGAGCTGGACCGGACAGCCTTCTTGCAGGTGCACGGGGGGCGCAGGAACGGCTACTACCCCCGCAAGCTGGAGACCACCTTCGGCCAGGTGGACCTGAAGGTCCCTAGGGATCGGGAATCTCGGTATTACCCGGCTTTCCTTAAGCCCTACGCCCGCCGCCTGGTGGACGTGGGGGAAGTAGCTGTGGCCTTGTACGCCGCCGGGGTCAGTCAGCGCAAGGCGGCCGAGATATTGAGCCTGCTCTTAGGCCACCGCTACTCCCACGAGACCCTGAGCGCTCTGACCGACCAAGTCCTGGAGGCGGCAGGAGCCTTCCGCACCCGGCCTTTGCCCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAACCTCGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 4 172529-172053 **** Predicted by CRISPRDetect 2.4 *** >NC_017273.1 Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 172528 37 100.0 35 ..................................... CTGGTGAAAATCCTGCGCTCTACCGCGCCGTGCGA 172456 37 100.0 39 ..................................... GTTGACATTAGCGATGACGCTGTAGCTGCCTGAGATCAT 172380 37 100.0 37 ..................................... ACCGCCCCCAACCCCCACCCCGCCAGCCCCCACACTT 172306 37 100.0 35 ..................................... ACGGCTTGGGCAAGGGAAAGCGGCATCCCCAACGC 172234 37 100.0 38 ..................................... CTCCACGGGGGGCGTCCCCCCACCCCCGCCCGGGCCCT 172159 37 100.0 33 ..................................... GACCAAGCTGGGCTTCTACGCGGCGGCGCTTAT 172089 37 89.2 0 .........................A....AAC.... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 98.5 36 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : GCCCGAAGGCTTCCCAACCCTCATGCTGCCCTGAGCCCAGGGCTACGTAAGCCAAGGCCGCACCCCAGACGGCATGGGGCACGCTATTTGTCCTTTTTCCCTCCGCCGCGACCTTGAGGTAGGCCTGGAAATCCCGAGTGGCCTTCCCAAGGTCGTGAAGGAGGGCCAGGGCCTGCCCCAGACTTGGGGTGCCAAAGTGCTGGGCAAAGCCCCCGGCTAGGCGGGAAACGGCCTCGAGGTGGTCTTTGAGGGCGTGCCAGGCTCCCTGGGGGTTAGGGGTGTGGGCTTTAGGGTCCATACATCCTATGATGAGGGCGATGCGCGAACCCCAAGTGCGCGCAGAAACACCGGGGGGTTCGCGCAAGGCGGCGAAGGCCGTGGTGGAGCTTGAAAACCGGTTCGGGTACCCCGCGCCAAACCCCTGAGCAAGGGTCCCGAGAAGGGGGTCGCCGCGAAGGATCTCCTTCCTGCCCATCAGGAGGGCTACGATATAGGGGGGA # Right flank : TTGCCGTCCTGGTCATGTGTAGTCCCCACGCACGTGGGGATGGACCTGGGTGGAAAGCCCCCTCAGGCCACCGCCCACCACGGGGCGGCCACCACCCGGTCCACCAGGGGGAAGACCTCTTCCCCCCCGTGGAGGAGGAGCCCGCCCGGGGCCTCGGGGTACTCCGCCAGGAAGGCCAGAAGCCCATGGGCGTCCTTCGGGGTGGGCCTGGAGGTGGCCTTCACCTCCACGGGAAGAAGCTTCTCCCCCGCTTCTAGCACAAAGTCCACTTCCTGGCCCGAGGCGGTGCGCCAGTAGTAGAGGCCCGGGGGGTGCTTCTGGGCGTCCCGGAAGGCCAGGAGGTCCAGGAGGACCAGCGTCTCCAGGTGAGCTCCCGAGGGCCTTCCCCCGGCCAGGTAGAGGGCCAGGGCGGGGTCGGGGAGGTAGACCTTGGGGGACTTGATCAGGCGCTTGGTGCGGCTACGGGCGTACCCCCTTAGACGCACCAGGAGAAAGCTTAC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.10,-18.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 5 180589-181953 **** Predicted by CRISPRDetect 2.4 *** >NC_017273.1 Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 180589 37 100.0 36 ..................................... AGGACGGCCATTGGAGACGCCGTCCTACCCTATCTG 180662 37 100.0 39 ..................................... CCCCGCCACGTGGCGCGCAGGATGGCCCACGCCTCCCGA 180738 37 100.0 35 ..................................... CTTGGCGCGTGGGAGGAGGTCCGGAGGGGGCTCAA 180810 37 100.0 36 ..................................... TCGGGGATGGTCTTACCCTCCAGAGCGGCGTGCCAA 180883 37 100.0 36 ..................................... CTCCCCCCCCTATAGTCCCCCCCCAAAACTCGGACC 180956 37 100.0 40 ..................................... GATTACTCACCCTGGGTGAGTAAACTGATTGGGGGTAGGT 181033 37 100.0 36 ..................................... ATTCACATCGTGGGGGCGGCCACCCCCACCGTGGCC 181106 37 100.0 35 ..................................... CGGTTGATCTCCTCCGGGGTCATGGAAGCTAAATC 181178 37 100.0 36 ..................................... TCCGACCTACCCGACTTCTCCCAGGAGGCCAACCGC 181251 37 100.0 39 ..................................... CAGAGCAGTGTGCCAGTCTCTGGGGTGTTTGACGGGGTA 181327 37 100.0 37 ..................................... GTCTACGGGAAGGCCTTCGCCCTCCGGAGGGCGGAGA 181401 37 100.0 38 ..................................... TAGAAGACTCTAACGTCAGGGACCAGCTCTCCCAAACC 181476 37 100.0 35 ..................................... CCCTCAACCTTCGCCACGCCCTCCTGGGGCGCCGG 181548 37 100.0 36 ..................................... ACCAGGAGGCGTTATGACCCCACAGGAGGCCATCCA 181621 37 100.0 38 ..................................... CAGCATGGCCTGCTCTAGGCGCGCTTCGTACTCTTCGG 181696 37 100.0 37 ..................................... CTTGGCGGGAATGCCGAGCCTGGCGGCCATGAGCCGC 181770 37 100.0 38 ..................................... ACGTTTCAGCTCCTCCAGGAGGTACTTCGCCGTGGCCA 181845 37 100.0 35 ..................................... GTAGGGGTGGGCCGCCAGCACCAGGCCCGGGGTCG 181917 37 89.2 0 ...........T.....................GCC. | ========== ====== ====== ====== ===================================== ======================================== ================== 19 37 99.4 37 GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Left flank : GAGGTGAGCGTGCATCGGCTGGACGTTCTCGTAGCTTATGATGTAGATACCCAATCAGAGGACGGCCAAAGGCGATTGCGCAGGGTGGCTCAAGTCTGTAAAAACTACGGTCAAAGGGTCCAGCTCTCCCTCTTTGAGTGCAGGGTCACCTTGGCTCAACTGGAGGACCTCGAGGCCAAACTCCTCAAGATCATGGACCTGGAAAAAGATAGCCTTCGCATCTATGTTCTTTATGGTGGCCGGGAAAAGTCCTTGAGAGCCCATGGCAAGGACAGATACACGGACTTTGACGAGCCCCTCATCCTATGATGAGGGCGATGCGCGAACCCCAAGTGCGCGCAGAAACCCCGGGGGGTTCGCGCAAAGCGGCGAAGGCCGTGGTGGAGCTTGAAAACCGGTTTGGGCACTCTGTGCCAAGCCCCTGGGCGAGGGTCCCGAGAGGGGGGTCGCCGCGAAGGACCTCCTTCCTGCCCATCAGGAGGGCTACGATATAGGGGGGA # Right flank : CGGGCGGTCAGGCCGCTAGGCCTATCTTGTAACGTTCCACTAACGTTCCACGCCGCGCAGGGAGTCCACGCGGGCGAGAAAGGCCACCAAGATGAGGGCCAACAAACCCCACAAGGGATACCGCCGGTTGTGGGCCCTGGGATCGGGGACTTGGGACAAGGCCTCGCGTAGGGTCATGCCCCCTCTTTACCCTAAAGCCGCATATCGGTCAAGTCTGGGGGGCCGAGCCCACCTTGCACTCCGCCTCACGGTAGGCTACCCTGGAAGTAAACCCACCGGGCTGGGCCTGGGTTCCCGATAGCCCGGTGCAGGACGCGCGGCCCTCCAGGGGGCCGTTGCCCGTTTTTCAGGACACCCCCACCAGACGTCTTTCCGTCCGACGGAAGCTTCCCCGGGCCGTAGACTGCCCTCATGAAGCGAAACGCTTGGGAGGTGTACGGCGAGGTTCTTAAGACGGCCCGGGAGCTTGGCCTCGAGGGGGAGGAGCAAGAGGTGACCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGCCCGAAAGGGCCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.20,-17.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //