Array 1 99640-100536 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================ ================== 99640 26 100.0 43 .......................... ATCGACATATTCAGCAATCGTCGATAGTTTTTCGTACGATAGG 99709 26 100.0 38 .......................... TTCTTTATCGTTGAGCGTTCGCTTCCGAACTATCTGAG 99773 26 100.0 42 .......................... TTACATTTGTCGGTAAGTACGCTATTCCGTTTTCGACCTTAG 99841 26 100.0 39 .......................... ACGAGGAAATCGAGTTTTCTTTCCATCATTTCGCCTCCC 99906 26 100.0 40 .......................... ATAGTGAACGGTAAGTCTGCGATGACGAGTATTTTCGGTT 99972 26 100.0 41 .......................... AGCAGACGTGATAGTTGATGACGACAAGTTACTGATTCAGA 100039 26 100.0 41 .......................... ACACTCAACGAGTAACTCCTTCATCATTCCAATTATCATGT 100106 26 100.0 40 .......................... TGCAAATACTTTCGACTTGAGCGATTGGTTGAGCGAAAGT 100172 26 100.0 41 .......................... CCTGTTTCGTTGATATTAATATATATTCTGGGGGCCAGAAA 100239 26 100.0 41 .......................... AATCTCCTTAAGAGAATTATAAAAAAAGAATGGAATAGAAA 100306 26 100.0 43 .......................... CCTATCCCCGAGTTCACGCACCCCCCTCCTGCAATCGCTCTAG 100375 26 100.0 40 .......................... TCAATAGTCTTTTCAGGTTCTGTTTCTGTTTTTTGGAAAG 100441 26 100.0 44 .......................... ACGTAACAGAAATCGTTTTCGCACTTCGCTTCTTCCAATTTCCT 100511 25 92.3 0 .......-....G............. | G [100516] ========== ====== ====== ====== ========================== ============================================ ================== 14 26 99.5 41 GTAGAATCCCAATAGGGAATAGAAAG # Left flank : AAACTTTCGTTCTGAATTCACCATCCCATGGTGAATGCTCATCTCCACCTCTTGTCCAAATTAAATTTTCTATTTACTCACAATTAATTCCATCATTTCCTCAACCTTAACCATTTGAATTCAGAATTAATGGTCTTCTTAAGCACCTTCAGTTTCTACCGGACTTCCTAATGGTTAATTCCATTTCAACCCAATCATTCAACATTGCCTTTAAGAAAACAAAGGCAATTTGCTAATCTAGAGTTCAGACCATCAGTACAAGCCCCTTTCAAGATCGATCTTTATAATGAGAAGAAGCTTAGAGGGATTAATAAGCGATCATGAGAACTCTGATGATCATGGGGATTTCTACTCCAGCCTACCTTATACAAGCATATGCATGCATATATTGGACAACTAATTGAATTTAAGTTCGAAGGGGGAAGGTACGGTTGTGTAAAGGAGAGCTAAGGGAAAGGGTTAAAAGATGAGAAAGGGGTTGCTTAAATAGGAGGGCAACG # Right flank : GATAAGATGTAAATCCTCACTAGTAAGCGTTTAGAACTTAACGCCTCTCTCCGAACTACCTCTCACGGAGGAAGAGTTTGGTTAACGTGAAGATCAGCAACGTCACCAAGTCCTTCGGCAGAAATGTGGTCCTAAAGGGAATAAATCTGGAAATACCTTCAGGGAAGTTCTTTGCTATACTGGGTCCATCGGGTTCCGGTAAGACAACGTTACTTAGAATAATTGCTGGTTTCGAAATCCCCGATAAAGGGAACGTGTTTTTCGACGGTAAGGACGTAACTGACAAACCGCCTTATAAGAGAAAAGTTGCCCTAGTCCCGCAGAACTGGGCGCTCTGGCCCCACATGACTGTGTTTGAAAACGTGGCCTTTGGTTTAAAGGTAATGAAGCTTCCGCGAAGCGAAATACGACAAAGGGTCAACGAGGTTCTAGACCTTTTAGGTTTGAAGGGACTAGAGGGAAGGTACCCTCACCAGTTAAGCGGAGGACAACAACAAAGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAATCCCAATAGGGAATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 149935-148820 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================================================================================== ================== 149934 26 69.2 107 .......T...T.G..CCAT.....T GTAGCAATTATGCCAATACAATATAGAGTTTGAGGAAAAGATCTCTATTTCATCTTTGAATTTTTACCTCATAATGAAAGTCAGGAAACCAATGCGGGGAATATTTC 149801 25 92.3 43 .............C....-....... AAGAAGTTAAAATTAACGAATATGGAACCGAGCGAACTACTAA C [149781] 149732 25 92.3 40 .............C....-....... AACCCCTTCATATTGTTCGCAGACCAAATCGGCGAGGAAG C [149712] 149666 25 96.2 41 ..................-....... GTGAAGAAGCCAGGAAGGGGGAGACCGAAATATTATCTAGC C [149646] 149599 26 100.0 53 .......................... ACTAGAAACCTTGAAGCTTCCTGTTCCTGAAAACATAAAGAATAACCCATTAG 149520 26 100.0 36 .......................... TACATTAAGCGAAGCGAAGAAAAGAGTCGTTCTGAA 149458 26 100.0 41 .......................... ACGAGTACGAACCGATCTATGCCATCACTATCGAAAACAGA 149391 26 100.0 44 .......................... ATAATGAGGAACGACTGTATCTTTGATTTCAAGAAGACTGAAAG 149321 26 100.0 38 .......................... CCCTTCCGGGTCTGTCGATAGGCCAGAAGCCATTTACG 149257 26 100.0 41 .......................... AGGCCTCTCTATTTCGAGAACGTAATCGAGGTAAAGTTCAA 149190 26 100.0 41 .......................... AGAGGTGAAGAAAGACTTAGGAAAATCCTGAAAGACGTCCT 149123 26 100.0 44 .......................... AGGAAAGGATGAGGAAGCTCGGTTTACTGAAGCCACCAAGACAG 149053 26 100.0 46 .......................... ATTGAACATCAGAACGCACCTATCGAACGTAAAAGTCTCTTCATTA 148981 26 100.0 42 .......................... AAAGCGAAATGTTTAAAACCGTGAGTGAGTAATAGTAACATG 148913 26 100.0 42 .......................... GCTTTGCTGGGACGGGACCGGCGAAGTGCAGGTCTACAGATT 148845 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =========================================================================================================== ================== 16 26 96.9 47 CTTTCCACTCCCTATTGGGATTCTAC # Left flank : TATTACGCGGAGCCTAGAATCGCAGTGACACATAGGATATCTAGAGGATTAGGGGAACGTTTCGCACACATCACCTCATATATCTCTATTACAGCTTTTCGAAGAGGATCGGTACTAAATTTTTTAATCTTACTCCGAAAGACCCGTAAATGGGGCGCCGCCCTCAGCTGGCCGCCGTAGCTCAGCTGGTTAGAGCGCGGGACTGTGGAGGCCCGGCTGAGAGGCCGCGGAGATCCCGAGGTCCCGGGTTCAAATCCCGGCGGCGGCCCCACCACGTTTACTCATCGAAAACGCCTAGTATTCCAATTTATTCTCATCCATGGTAAAGTTAGTTGAACGGAGACTTGCGCGAGGTTGCCCTTATTTCCAGTACTTACTACATGATACCTTTCTAGTAAAAACATCGGTGCTTCCGAAAAGACGGGCGTACTTACGTCATTGATATTGAATGTTCTCTCCGTAACATTGACTTGAATATTAGCTGATGAGTTGTTCTACAA # Right flank : CGTTGCCCTCCTATTTAAACAATCAATTCCCCATCTTTTAACCCTTTCCCCTCATTTGCCTTTCCACATTCACACCTTCCCTTTCAGAACTTGAACTCAATTAGTTGTCCAATATATGCATGAATATGCTTGTATAAGGTAGGCTGGAGTAGAAATCCCCATGATCATCAGAGTTCCCATGATCGCTTATTAACCCCTCTAAGCTCCTTCTCATTGTAAAGATCGATCTTGAAAGAACCTTGTACTGATGGTCTGAACTCTGGATTGGTAAATCTTGTTTGCTTTTGCAAATACAATGCTAATTGATTTGGTTTAAATTGAACTGACAATTAGGAAGGCTGGTAGAAACTGAAGGTGCTTAAGGAGACCATTAATTCTGAATTCAAATGGTTAAGGTTGAGGAAATGAGTGAATTGATTGTGATTAAATGGAAAAGTGAATTTGGACAAGAGGTGGAGATGAGGATTCACCATCGGATGGTGAATGAAGACAAGGATTTT # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCACTCCCTATTGGGATTCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 3 189392-189762 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================================== ================== 189392 25 80.8 51 T.........TA.C..-......... ATGGTCTCTACTCTGGCCTCGTCTCCGTTTCTCCGTTTTCATAATATGACA C [189412] 189469 25 80.8 42 ...........A.G..-T....G... TAATATGAAGAATAAGAGGGGCCACAAACTTGTTTAACCAAT C [189490] 189537 26 100.0 44 .......................... ACAACTTGGGGACGGCGATACCTTTATATTCTATTATGATATTT 189607 26 100.0 36 .......................... TCATTTCGAAATGGAAAAAGTAGTTTGGTCGAAAAA 189669 26 100.0 42 .......................... CTATGTCATCCAGAGTGGGTTCGGCGGAGTACAAAGTACTGA 189737 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================================== ================== 6 26 93.6 43 CTTTCTATTCCCTATTGGGATTCTAC # Left flank : TCGAAGTACTTAAGGCGATGGGGCGACTATAAGTCCGCTTTTCATACCTATTGAGACGAATTCGTGGACTATCCTCTCGGCTTCGTCCCTGCTCATTCCGGTTAGAGCGATAATTTGAGCCCTAACCTCCTCCACTGTAGCACCTTCCTTGAAAGCTTCCCATAATAGCAAGGCTCCGAGCCCCATCTCGAACTTCCTTTTTCCCTTCCGCAAGAGGGCTTTGTTTCCCTCCACTCGTATTACTTCACCTTCTGCTCTAAGCATGTAATTATCCCATATTATTAAGGTAGCATCTCATTATATAACTCTTTCCTGCAGGATAGGTTCACTAAATAATACTAAGATCATACAACTCCGGCTTTCAAGTCAGTGAAGGATTTCATACTTGAGGTCTAATGGATAGTTTAAATTAAGCGCACCAACGATGATGCTAAATCCTAATTTTAACCATTTTAAGGTATATTGTGTGTGCTATTGTATATTACTAACTATATAGAAAT # Right flank : CCGATGCCCTCCTATTTAAGCAACCAATTCCTCACCTTTTAACCCTTTCCCTTAGCTCTCCTTTCCACAACCATACCTTTCCTCTCAGAACTTGAATTCAAGTAGTTGTCCAATATATGCATACATATGCTTGTATAAGGTAGGCTGGAGTAGAAATCCCCATGATCATCAGAGTTCCCATGATCGCTTATTAACCCATCTAAGCTCCTTCTCATTGTAAAGATCGATCTTGAAAGGACCGTGTACTGATGGTATAACCTCTGGATTGGTAAATCTTGTTTGGTTTTGCAAATACAATGCTAATTGATTGGATTAAAGTGGAATTAACCATTAGGAAGGCTAGTAGAAACTGAAGGTGCTTAAGGAGACCATTGTTTCTGAATTCAAATGGTTAAGGTTGAGGAAATAAGGGAATTTATTGTTAGTAAATGGAAAAACGAGTTTGGACAAGAGGTGGAGATGGGCATTCACCATCCCATGGTGAATAAATCTGGAATGGA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTCCCTATTGGGATTCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 4 212161-212855 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================== ================== 212161 26 92.3 43 ......AT.................. AGTGAGTAGTTTCGAGTTGAGCGAGTGGTCAAGTGAAAGTAAG 212230 26 92.3 39 ......AT.................. AATCCTTCACCTTTTGCGCGCTCAACTGCCAGAGTTTTT 212295 26 92.3 46 ......AT.................. AGGGTAACACAGTTTGCTTTAGTATGCGTCTCTCTTCTTCCTCGCG 212367 26 92.3 41 ......AT.................. ACTTCATGCTAAGACTGTTAGGAATCGATTTAGAGATTTTG 212434 26 100.0 41 .......................... TTGTGTTGACGATGTCGGCCCCCGCTTCCTCGCAGACCTTC 212501 26 100.0 37 .......................... CGGCGAGTATTTTCAGTGCGTACGTCTCGAACGCCCT 212564 26 100.0 39 .......................... TATCGAAACCAAACTTGTTGCGAACTTTTCGTTCAATTT 212629 26 100.0 41 .......................... TCACAAATATGGATGTGAGGAAGTTCGTCGCAAGGAACCTA 212696 26 100.0 42 .......................... CATCTTTAACCGTATCATAATCAAAAACAACGTCATAAAGCC 212764 26 84.6 40 ......AT....G..A.......... TAGGAAAGCTTCTTGTTTAGAACATAATACACAAGAACAA 212830 26 76.9 0 ......AT....A.T...A.A..... | ========== ====== ====== ====== ========================== ============================================== ================== 11 26 93.7 41 GTAGAGTCCCAATAGGGAGTGGAAAG # Left flank : TTATTCATCTATCTCATTCACCATCCGATGGTGAATGCCCATCTCCACCTCTTGTCCAAATTCGATTTTCCATTTACTCACAATCAATTCCATTATTTCCTCAACCTTAACCATTTGAATTCAGAAACAATGGTCTCCTTAAGCACCTTCAGTTTCTACCAGACTTCCTAATGCTCAATTCCATTTCAACCCAATCATTCAACATTGTATTTGCGAAAACAAATGCAATTTACCACTCTTGAGCTTAGACCATTAGTACAAGGTCCTTTCAAGATCGATCTTTACAATGAGAAGTTGCATTGAGGGGTTAATAAGCGATCATGAGAACTCTGATGATCATGGGGATTTCTACTCCGGCCTACCTTATACAAGCATATGCATGAATATATTGGACAACTACTTGAATTCAAGTTCTGAGAGGAAAGGTGTGAATGTGGAAAGGCAGATGAAGGGAAAGGGTTAAAAGATGGAGAATTGGTTGTTTAAATAGGAGGGCAACG # Right flank : GTAAGTACACCTACTTGAGCGTTCAAGCGAAAGCGTAAAGCAGAGATCCATGATAGAAAAACTTATTTCCTTCATAGCAAAAGAATGAAAAAAGTTCATTCAAGCGCGCGAAAACGAATGGATAAAATTGGTTCCGAATCGAAGCCAATTCGAAGTTCACTTTAAATTTCCAACTCGTCTCTGTAGAAACTGGCCCCGTAGCTCAGCCAGGAGGAGCGCGGGCCTTCGGAGCCCGTGGTCCCGGGTTCAAATCCCGGCGGGGCCGCTGCCCCCTCACATAACTTTCTACGCTTTTTGAACGCGTCACATCGTTATTTCCGCCTGTCAAATAATACTTTAAAAATGTTCCTATTTTTATTCAATTGAGCATGGAAGAAAATATTTTTATAGACCTATCTTGCCTCCATTTTCCGAGGGCCCGTCGTCTAGCCCGGAAGGACGCCGCCCTCACACGGCGGTAGTCCGGGGTTCAAATCCCCGCGGGCCCACTACTTCTCTTG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAGTCCCAATAGGGAGTGGAAAG # Alternate repeat : GTAGAGATCCAATAGGGAGTGGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 241349-242246 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================= ================== 241349 26 100.0 40 .......................... ACCCTGTAAATTCAAGGCTAACGAAAAAGTATATGCAGTC 241415 26 100.0 38 .......................... GAGGTTGAGTTTTAAACTTGGGTGGAGTATTAAAGCGA 241479 26 100.0 41 .......................... CTTGTTCAGCTTTACTCTACCATTGATAACGAGCCAAGCAA 241546 26 100.0 40 .......................... TACATTTGTTCGGCTTGGGGCTGTAATCCTATATAATTTT 241612 26 100.0 44 .......................... TCGGCCTCGAGCCCCCTCGGGGCTTTAAGAGTCCCGTTTTCCTT 241682 26 100.0 41 .......................... CCTCATCAACCAAAGCTGATAAAATTGCAGTGTATACTAAC 241749 26 100.0 45 .......................... AAGGAAATTGTAAAGCCACCTTAATTCGTCAAGCGTAAGTTTCGG 241820 26 100.0 39 .......................... GGTGATTCTAATTTCGGCCTCGGCAAAGGACGGTACCTA 241885 25 88.5 41 .....A.-....G............. ATCGATGGCAACGGTCGTTTTCGAAGCAATGAATGGCAGAA G [241890] 241952 25 84.6 41 .....A.-..........A.A..... GAAACCGCATTTAACGTCAGCGTCGCGTTGCACATTATTCT G [241957] 242019 26 88.5 43 .....A............A.A..... ATCGAAGAGAAGGTGGCTGAGCTGAAAGCAAAGTACAACGTTA 242088 26 92.3 40 ..................A.A..... CCTGGTGTCATTGACTCTGTGTTTAATAAAGTTTTAACAA 242154 26 88.5 41 .....A............A.A..... CAGTACTAGTCTCTAATCATACCGTTCTCATAAATAGAACA 242221 26 69.2 0 ....G.AT....G.T...A.A....A | ========== ====== ====== ====== ========================== ============================================= ================== 14 26 93.7 41 GTAGAGTCCCAATAGGGAGTGGAAAG # Left flank : TATCTATGGAATCTCATTCACCATCCCATGGTGAATTCTCATCTCCACCTCTTGTCCAAATTTAATTTTCCATTTACTTACAATTAATTCACTCATTTCCTCAACCCTAACCATTTACGAAAAGAAACAATGGTCTCCTTAAGTACCTTCAGTTTCTACTAGACTTCCCAATTGTTAATTCCATTTCAATCCAATCATTCAACGTCGTATTTTCAAAACCAAATGTAATTTACCACTCTAGAGCTTAGACCATCAGTACAAGCCCATTTCAAGATCGATCTTTACAATGAGAAGAAGCTTAGAGGGGTTAATAAGCGATCATGGGAACTCTGATGATCATGGGGATTTCTACTCCAGCCTACCTTATACAAGCATATTCATGCATATATTGGACAACTACTTGAGTTCAAGTTCGAAGAGGGAAGGTGTGAATGTGGAAAGACAGATGAAGGGAAAGGGTTAAAAGATGGGGAATTGGTTGTTTAAATAGGAGGGTAACG # Right flank : AAAGGAGTTTCATAGTTACCAGCTCTCGTATCTCTCAACTCCTTGTCAAAATAATCCGTATGTAGAGAATACGTTACTACCTTACCTATTTCCTTGAAATCGAACAATGGGTCAGAAAGACATCGAACGTGAGCTAGATACTAGCCCTTTTTTACTTCGTTCCAATCCAGAGAGGTCGGTGGACCTCAATGGCTGCTCAGAAGGGCGACGTCGTAGTTCTAGACTACGTCTTGAAGCTAAAGGATACTGGAGAAGTAATAGACACCACCTTAGAGGAAGTAGCTAAGGAGAGCGGTATATATAAAGAAGGTACCAAGTACGAACCTTTCGTAGTAGTTCTCGGCGAGGGTAGGTTGATACAAGGAATTGAAGAAGCCGTCGAAGGCATGGAAAAGGGCCAAGAAAAGGAGGTGGAAATTCCTCCAGAGAAGGCTTTCGGACCTAGGGATCCAAGTAAGATAAGGAGGTATACTGTAAACGAATTCAGGAAAGCGGGAATA # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAGTCCCAATAGGGAGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 252223-252985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================== ================== 252223 26 100.0 43 .......................... TCTCTTCCATCTCATTCACCTCATACTATACTACTCATGTGCA 252292 26 100.0 37 .......................... CTAAGGAGGTCGGCGATATCGTCGAACCCCTCCTCTT 252355 26 100.0 41 .......................... TTTCGTCATTGTGATGATCGAAGATGACCACTCTTATTCCT 252422 26 100.0 40 .......................... AAACGATAGAGCACGTTCACTTCAGTACTTTCGTTTTCGA 252488 26 100.0 46 .......................... TAACGCAATACTCGGTTTTCTCTCGAGTTTCACGCCCGATCCGAGT 252560 26 100.0 41 .......................... ACCCCCGATTCTGTCCACAATCTCCCGTAAGATTTAAACAT 252627 26 100.0 41 .......................... CAACTTTACCGTTATAGTATCCGAGCGCTATCCTGTCCCTC 252694 26 100.0 40 .......................... AGACTCCGTATGATTCTTTAAAACGGTATAGGCTTCCATT 252760 26 100.0 43 .......................... CTCGTTGAAATCGAACTATCAAAGCACCATGCAATCATATCTA 252829 26 100.0 40 .......................... ACGCATCTTGGAGAAGCTGAACGTACCAATTCCGAAAGAA 252895 26 92.3 39 ............G.T........... CCCTCCAAAACTTTGCCGTACTGGGTGGCTACGTGTTTG 252960 25 73.1 0 .......-...TG.T.A...G....C | G [252965] ========== ====== ====== ====== ========================== ============================================== ================== 12 26 97.1 41 GTAGAATCCCAATAGGGAATAGAAAG # Left flank : TTGCATAAATTTAGCATTCACCATCCCATGGTGAATCCTCATCTCCACCTCTTGTCCAAATTAACTTTTCAATTTACTCACAATCAATTTACTCATTTCCTCAACCTTAACCATTTGAATTCAGAAATGATGGTCTCATTAAGCACCTTCAGTTTCTACTAGACTTCATAATGCTCAATTCCATTTAAACCTAATCATTCAAAATTGCCTTTAAGAAATCAAATGCAATTTACCACTCTAGAGCTCAGACCATCAGTACATGGTCCTTTCAAGATCGATCTTTACAATGAGAAGTTGCATTGAGGGGTTAATAAGCGATCATGGGAACTTTGATGATCATGGGGATTTCCACTCCAGCCTACCTTATACAAGCATATGCATGCATATATTGGACAACTAATTGAGTTCAAGTTCTGGAAGGGAAGGTGTGAATGTGGAAAGGAGAGCTAAGGGAAAGGGTTAAAAGATGGGGAATTGGTTGTTTAAATAGGAGGGCAACG # Right flank : CTTATTTCCTTCATAGAAAATGAATGAAAAAAGTTCACTCAAGCGCGCGAAAACGAATGGATAAAATTGGTTCCGAATCGAAGCCAATTCGAAGTTCACTTTAAATTTCCAACTCGTCTCTGTAGAAACTGGCCCCGTAGCTCAGCCAGGAGGAGCGCGGGCCTTCGGAGCCGCTAGGGTCCCCGGGCCCGCTAATCCCGGTGGGGCTGCCACTTATATGCCCTATTTTGTAGCCCCAAAATATTGTTTGTCTTATTTAGGGGTTAGCTGAATGTTGCTATTATTTTAACAGTTTTCTTACTGCTTCAGTTATAGTCCATATTTCTACTATTTTAGCCCTTCTTAGGTTTTGGAAGTCTTTGTCATTAGTTATTAGGATGCAGTGTGCTTTGAGGCATGTTGCAGCGTGGTATATGTCTGCGCTCTCTGTCTCCGGGAAATATTGTTTAACCCTATTAACGTCGTCGTTGCTCGGGCGCTCTAATTTGGCCTTATCTTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAATCCCAATAGGGAATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 7 324148-324508 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 324148 26 92.3 41 ......AT.................. TCCATCTCTTCAAACAAGTCCCTGAGATTCTCTGATAAGAG 324215 26 92.3 41 ......AT.................. TCGTTCACTGTGAACGGTAGGTCTGCGATAATTAATATCGA 324282 26 100.0 38 .......................... TTTACAGAAACTTCAACTTCAAAGTGTGGTGTACAATT 324346 26 100.0 43 .......................... CGAGTTCACGCACCCCCTCCTGTACTCGATTCATTTCATCAAA 324415 26 92.3 42 .....A...................T ATTCTAGATAGTGAATTCGAAGAAGAAAATGAGGGAAAGAGG 324483 26 92.3 0 .....A.............C...... | ========== ====== ====== ====== ========================== =========================================== ================== 6 26 94.9 41 GTAGAGTCCCAATAGGGAATAGAAAG # Left flank : TTGCATAAATTTAGCATTCACCATCCCATGGTGAATCCTCATCTCCACCTCTTGTCCAAATTCGCTTTTCCATTTACTCACAATCAATTCACTCATTCCCTTAACCTTAACCATTTGAATTCAGAATTAATGGTCTTCTTAAGCACCTTCAGTTTCTACCAGCCTTCCCAATTGTTAATTTCATTTCAACTTAATCAATTAGCATTGTATTTGCAAAATCAAACGTAATTTACCAATTCAGAGCTCAGGCCATCAGTACAAGGTTCTTTCAAGATCGATCTTTACAATGAGAAGGTGCTTAGAGGCGTTAATAAGCGATCATGAGAACTCTGATGATCATGGGGATTTCTACTCCAGCCTACCTTATACAAGCATATGCATGCATATATTGGACAACTACTTGAGTTTAAGTTCGAAGAGGGAAGATATGGTTGAGGAAAGGCAGATGAAGGGAAAGGGTTAAAAAGTGAGAAAGAGGTTGTTTAAATAGGAGGGCAACG # Right flank : GTTACACCCGTAGTAACCTTTGCGATTACGCACTATCCCATGGAATTTCTCTGAAAAGAATCAGAACTTTCCTTCACAACCTTCGCGACATTAAATTATTGGAAACGCAGAGGCGCCCGTTTCCTATTAATAGATCAATTGCAAAATTATGGACTAATTACGTCCATTCTCGTTAAGGTGACCTCGTTCAAGCTAATTTGAAGTTTAGAGCGAAAAATTCGAGTGAACCGCGGGAAACGGGAGAACTAAGGTATTGAAAATTACTCTATGTCGAATACCTTCTTACCGTACCTACTTACGAAGTACTCCACGTTCTCATTGGATACACCAGTTCCGCCTTCCTTTTCTATGTTCCAATACGTTCTCAAGCACCTTCTCCCGAATTCCTTCAAGACGGCCACTTGCTTCCTAAACTTTATTTTCGTCTCCTCTTCCACTTCCTCCCAATCTCTTCCTTGAAGAACCTTAGTTATTAAAGTGATCTTAGTGTCCTCGTCTAT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAGTCCCAATAGGGAATAGAAAG # Alternate repeat : GTAGAGATCCAATAGGGAATAGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 8 466451-467462 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 466451 26 100.0 37 .......................... CGTTATACTACTCATGTACACTTTTATGCTTAACTGT 466514 26 100.0 41 .......................... GCCAAGGCTCTGGCGGGTACACGATATATCTCGATTTTGTT 466581 26 100.0 39 .......................... ATCATTAGCAACCAGTTTGGTAATGACGACCAACTTAAG 466646 26 100.0 39 .......................... ACTCCGCTTTGAAGCGTCATACGGAGTCTGGAGCATCGC 466711 26 100.0 43 .......................... GCTTCCCCATTAATGTTCAACCACTACATTAGTGAAATAGTGG 466780 26 100.0 41 .......................... ACATTATTAGCTTTAGCTTCTCCGGAACTTCTCCGAGAACA 466847 26 100.0 41 .......................... GAGGCCTCCCTCCATTGCGGTCGATACGTTTCTTTAGTCCT 466914 26 100.0 42 .......................... TCGACTATCCTGATGCCGACCCTAACTTGAACTTTGACCCGA 466982 26 100.0 41 .......................... TTTTCGCTGAGTTTTGGTAATATCTCGACGTCAATGGGGTC 467049 26 100.0 36 .......................... TCCAGTTTGTCACCAGTTTCTTTACCATCAACGATT 467111 26 100.0 34 .......................... TACTTGGCGAGCTCCCACAGAAGCTCAACGAAGT 467171 26 100.0 39 .......................... CCTTTAAGCCAATTTCAGGAGCTTTGTTATCTCCTTTTT 467236 26 100.0 38 .......................... TTTTCTTCCCTCCCCGCCCCCCTAGACAGAGAAATAGC 467300 26 96.2 43 .......C.................. CATGTTAAACCAACTACACAACATATTTAAACAAGTGAAGGAA 467369 26 96.2 42 .......C.................. GCGCTTAAGTGAGATACTGAAGGTCAAGAAGTTGCTGGATGA 467437 26 84.6 0 ......G.......T.......GG.. | ========== ====== ====== ====== ========================== =========================================== ================== 16 26 98.6 40 GTAGAGATCCAATAGGGAATAGAAAG # Left flank : TCAGAGTCATAGAGTTTTCACCATCCCATGGTGAATCCCCATCTCCACCTCTTGTCCAAATTCATTTTTCCATTTACTCACAATTAATTCCATCATTTCCTCAACCTTAACCATTTGAATTCAGAAACAATGGTCTCCTTAAGAACCTTCAGTTTCTACCAGCCTTCCCAATTGTTAATTCCATTTCAATTAAATCATTCAACATCGTATTTGCAAAAGCAAATGCAATTTACCAATCCAGAGGTTATACCATCAGTACGAGGTCCTTTCAAGATCGATCTTTACAATGAGAAGTTGCATTGAGGGGTTAATAAGCGATCATGAGAACCTTGATGATCATGGGGATTTCTACTCTAACCTACCTTATACAAGCATATGCATGCATATATTGGACAACTACTTGAGTTTAAGTTCTGGAAGGGAAGGTGTGAATGTGGAAAGGTAAATGAGGGGAAAGGGTTAAAAGGTGAGAAAGAGGTTGTTTAAATAGGAGGGCAACG # Right flank : GTACAGAATATGATATAAGAAATTAAAAAGAGGCAGAAAGTACGTATCTGTAAAGTTCCTGAGGATTCACATTGTTTAGCCAACTGTATTTACTCAGAAATTCATCTACGTCGTATCCCCTTTCTCGGAGAGATAGTCTAATGTACTTAGAGGGGGTTTGAGGCGTATCCCTCAATTCTCCTCTGTATAAGAACGCCGCTAAGCTATCTGCCAAGCTAATCAACCCGCTCATGACATAAGAGAGCTTCAAGTAGTAAGGGCCCATTTGGTAAACGTCTCTATTAACGAAGTTTTGTAGTACGTCTCTCGCAGAATATCCTCCGATTGACCAGTAGTCCTTGCTCTCGGGCGACTCTATTCTCAAGACTTTCCATAATTTCATTCTCTCTAATCCAATAGCTTTGTAGATGGATCTCTCATCGAGTAAGCACTCGCTAACCATCCTCATAGCATGGTGGTGGTTGAGAACCGAGTACTCAATTACCATCCAATCGTTTCGT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAGATCCAATAGGGAATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 9 809258-810077 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 809258 26 100.0 42 .......................... AGTATTTTTATTAGTTTCCTAGCTTTGGCTGTCCTTATTAGC 809326 26 100.0 43 .......................... ATTCTCTTCCCTAGGTCGCTTGGTCTCTTGGTGGTCGTTTCGA 809395 26 100.0 42 .......................... TAGAAAAGAGACCGAAAGAGATCATCCGGCCTCCAGATTTTT 809463 26 100.0 39 .......................... CAACGATTTCAAAGACTGTGAACTCGATATCGATAAGAG 809528 26 100.0 37 .......................... TGAACTTTCCACAAATAAGAGAGCGTTAAGCTTAAAA 809591 26 100.0 41 .......................... TCCCCATTGGGGGAGGAGTACTCGGCGTAGATCGTGTACCC 809658 26 100.0 42 .......................... ACAAATGTCCCAGTCTATTAAAAAATCTTTCTCCTCCCCATT 809726 26 100.0 41 .......................... AGAACTATATTGAGAGCTAGGGGGATTGAAAATGGTAGGCA 809793 26 100.0 36 .......................... CTTACCGAGCAGATCTTGTACTATGCTGTATACTCC 809855 26 100.0 40 .......................... TTGCAGTCAATTGTGCAAAGGTTTTGATACTGTTCGTCAG 809921 26 100.0 40 .......................... TCTTCACCGTCGAACTGCTCCCCGAGGTACTCGAGTACCT 809987 26 96.2 39 .........................T TCCTTAGCGTATTATTTTCATTATGGCGAACAGGATGAA 810052 26 80.8 0 ...T..TC....G.T........... | ========== ====== ====== ====== ========================== =========================================== ================== 13 26 98.2 40 GTAGAGATCCAATAGGGAATAGAAAG # Left flank : AATTATACTTTAGCTATTCACCATCCCATGGTGAATCCCCATCTCCACCTCTTGTCCAAATTAAATTTTCCATTCATTCATAATCAATTTACTCACTTCCTCAACCTTAACCATTTGAATTCAGAAACAATGGTCCTTTTAAGCACCTTCAGTTTCTACCGGACTTCCTAATGCTCAATTCCATTTCAACTTAATCATTCAACATCGTATTTGCAAAAGCAAACAAGATTTACCAATCCAGAGCTCAAGTCATCAGTACACGGTCCTTTCAAGATCGATCTTTACAATGAGAAGTTGCATTGAGGGGTTAATAAGCGATCATGGGAACTTCGATGATCATGGGGATTTCTACTCAAGCCTTCCTTATACAAGCATATGCATGCATATATTGGACAACAAAATGGGTTGATATTCGAAGAGGAAAGGTATGGTTGTGGAAAGATAGATGAAGGGAAAGGGTTAAAAGGTAAGAAAGAAGTTGCTTAAATAGGAGGGCAACG # Right flank : GGTGGAAAGATATAGTATAGTTCGTATCGTCCTTTGATGGTAGAAATCTGCGAGAAATAAAATAGTATAAGGATAAGTGAAACGCGTTCTCCTCGGTAATTACTAATATTATGAGAAAAGTCTGTGAACTTTGATCCTTCAGATCGAAAATCTGAACTTAGAAGGTTACAGTTTCCATAATGGGTTCTTCTCCTTTCTTGATGATCAATACGTCGACTCCGTCTCCCGATAAGCTATCTCTTGAAGAGGCAACCCGTATTGAGTCTATAGCTAAGTTCTTGGCGTCTTGAACGCTCATGTCCTCTCTGTATTCGCGCTCTAGGAGGGCTATCGCTAAAGGCGCACCGCTACCTGCAGCCGCGTACTTCTCTTCTACTACCGAACCCACTGGATCTAATACGAAAATATGTGGGCCGGACGAATCTATTCCTCCAAAGACGGTTTCCGTGAGTAGTGGGAACATCTTATAAGAATACAAGAGTACTCCCAGAAACCTCGCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAGATCCAATAGGGAATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 10 871510-872524 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================ ================== 871510 26 100.0 37 .......................... CTAATCTTATTAGAGACGCGATTTCTTCGAATTCCCC 871573 26 100.0 38 .......................... AAGATTTATGCGAATTCATAGCCTAATTCTTTTAAGAA 871637 26 100.0 40 .......................... CAACCTCGATTTATTTTTTACGTTTTCTACGTTCTTTTAT 871703 26 100.0 37 .......................... TTCTCTTTCTTCTTTTCCTTTAGCTCTTCAATTAGCA 871766 26 100.0 41 .......................... CTTCTTCATTTCTTCCTCCTTTTCTTTCAAGCCACGTAGCA 871833 26 100.0 42 .......................... CAAACTCTCCCCGAATTCTTGCGCTTCGGTTGGGGTTCCCAT 871901 26 100.0 44 .......................... ATATGATAGCATATTACTCCATCTTCTTAGCTTCAAGAAGATAA 871971 26 100.0 38 .......................... TCCGAGGAAATAGGCTCGAGCCTTTTTATGTTTTGTCT 872035 26 100.0 42 .......................... TGTTATAAAACTCATTAGACCTCTCTATTTCGAGGATGTAAT 872103 26 100.0 43 .......................... CCCTCTCTAGGTCCCTCCTCCCTCTGAAGGGATCGATTATCCT 872172 26 100.0 37 .......................... CCGGTGTCAAGACGCGTGACGACTATGTTCATAACGT 872235 26 100.0 36 .......................... TCTTCTTTCTCGTTCCGTGCGAACCCTCTAAGTACA 872297 26 96.2 40 ..............T........... AATCAGTAACACTTATAATACTACGTCTGGTAGTATTGTA 872363 26 84.6 43 .......C....T.....A.A..... TAGTCTCATTCCACTTCCCGGACTTGGGAAGCATTCCGTTACT 872432 25 84.6 41 .....-......T.....A.A..... TTATCGTATTCGATCCTTATAGTTAGCTTAACTTCATCCGG C [872440] 872499 25 84.6 0 ......-.....T.....A.A..... | A [872509] ========== ====== ====== ====== ========================== ============================================ ================== 16 26 96.9 40 GTAGAGATCCAAGAGGGAGTGGAAAG # Left flank : TCTGTTTTATGATTTATTCACCATCCCATGGTGAATACCCATCTCCACCCCTTGTCCAAATTCACATTTCCATTTACTCACAATCAATTCCATCATTTCCTCAACCTTAATCATTTACGAAAAGAAACAATGGTCTCCTTAAGCACCTTCAGTTTCTACCGGACTTCCCAATTGTTAATTCCATTTTAACCCAATCAATTATCATTGTATTTGCAAAAACAAACAAGATTTACCACTCTTGAGCTCAGACCATCAGTACAAGGCCCTTTCAAGATCGATCTTTACAATGAGAAGGAGCTTAGATGGGTTAATAAGCGATCATGGGAACTTTAATGATCATGGGGATTTCTACTCAAGCCTACCTTATATAAGCATATGCATGTATATATTGGACAACTACTTGAATTCAAGTTCTGAGAGGAAAGGTATGGTTGAGGAAAGGCAGATGAAGGGAAAGGGTTAAAAGATGGAGAATTAGTTGTTTAAATAGGAGGGCAACG # Right flank : GATAATATGTTATAACTATAAAGTATTCTCTTAAGAGGCCTCTAGCAAAAGTCTCGAGGCGAAATTGAAGCGGAAATGAATAGAAGGTATGGGCCTCGAATGCGTAGGAACTGTGAGGGGTCGGGGCCGGTCCACTTCTTCACCCATCTAGGCTCAAGAGGCGCCGCTCCTCATCCCCAGTAACGAAGTTCGTTAAAGGTACCGTTCTAGCCGCTTCCGATAGCCTATCGAACTCGTCCAGCGTGAGGCCTCCTTGGGGTACTAACTTGAAGCTCCTTTGGGCCCTCTCGAGGTCTTCGGCCCTAAAGAACCTCCACCCCCTCCCATCGAGTACTTTCACAGCTATCCAAGGTTCTGCCCCGCCCCTAATTTTCCATACCATTAACGTTTCGACTTGCTTTGGAGGCAAATATATCGTTCTCTCTTCACTGGAAGTCTTTACCTCTATAGCCGCTGCGTATCCCTTCTTCAAGGCGACCAAGTCGGGATACGGGTACCTC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAGATCCAAGAGGGAGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 11 899860-898905 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 899859 26 100.0 40 .......................... CCCCAATATCGCGCTCTTACATTAATTCTCGATCAATCAA 899793 26 100.0 35 .......................... ATTTTCAACGAAATTGACTAAATGCTCAGCATCGA 899732 26 100.0 39 .......................... AAGAATCAACGAAGCTCGGTTTGGCAGTTCCTATCTTCC 899667 26 100.0 42 .......................... CTTGAAGAGAGCGTTCATAAACGTACCGGTGCGTTTAGCTTA 899599 26 100.0 42 .......................... TTGAAGATCTCGTTCTGCAAACCTTTCAACAAGTGCATCAAA 899531 26 100.0 40 .......................... GATGCAAACCATTTGATTTTTTCTCTTAACTCCATCCCGC 899465 26 100.0 42 .......................... TTATAATCACCTGAGTGGCGCCGGGGGCGGGATTCGAACCCG 899397 26 100.0 39 .......................... TTTCACCCATTGCTGGAAGGAGTGGTGACTATGACGCCC 899332 26 100.0 43 .......................... AGTAGAAGTTCTCGAACCTTTCTGGATCATTCTCGATCCATTT 899263 26 100.0 40 .......................... CTCGCCTCCGCTTACGAGGGCTATACCGTTGCCGTGACCA 899197 26 100.0 40 .......................... GCTACTTTAGTCCATTTACTCTCCCCCATTTTCTTTCTCT 899131 26 100.0 40 .......................... AGTGGGTCTTGGCAACAGGAACAATAGTGGTACCTTACAA 899065 26 100.0 42 .......................... TCCATTCCTCAATCGAGCAAGCGGTCTTTCTTCCCATTAATG 898997 26 100.0 41 .......................... AGGACTCCAGGAGAATTGTATGCTCTATTAGGGGCCAAGAG 898930 26 88.5 0 ............G.T.......G... | ========== ====== ====== ====== ========================== =========================================== ================== 15 26 99.2 40 GTAGAGTCCCAATAGGGAATAGAAAG # Left flank : ATGGTGAAAACTCTATTCACCATCCCATGGTGAATCTTCATCTCCGCCTCCTGTCCAAATTCGTTTTTCCATTTACTTACAATTAATTCCCTCATTCCTTCAACCTTAATCATTTACGAAAAGAATTAATGGTCTCTTTAAGCACCTTCAGTTTCTACCAGACTTCCTAATGCTCAATTCAATTTAAACCCAATCATTCAACATCGTATTTGCAAAAACAAAGGCAATTTACCACTCTTGAGCTCAGACCATCAGTACAAGGTCCTTTCAAGATCGATCTTTACAATGAGAAGGAGCTTAGAGGGGTTAATAAGCGATCATGGGAACTTCGATGATTATGGGGATTTCTACTCCAGCTTACCTTATACAAGCACATACATGCATATATTGGACAACCAAATGGGTTGATATTCGAAGTGGAAAGGTATGAATGTGGAAAGGCAGATGAAGGGGAAAGGGTTAAAAGGTAAGAAAGAGGTTGTTTAAATAGGAGGGCAACG # Right flank : ATTTAGTACTAACTTCTTTAATTAGTTAAGAATAAGAGGAAGGAGTGCCCATGGAAAGCGGACGAGCTTGTGAGCGACAATGGAGGGGCATAGTCCTATGATGAGAATTGACGAATCGTCGTTCATAACGAAGTTGCGAGACCTATTGAACGAATTCAATTCCAATGAAGGGTCGAAACTAGACGTTCTTAAAAGGTTAAACGAGTTTCTGGAAAGCCTCGGAGACCTCCTTGTTAGGGAAACCGAATTGATTCTCACGAAAATAGTAGAGTACTACCTCGAAAGCAATCCGGAGTTTGTGTCGACAATCGAGAAAATACTCCGTTCTCCCGAAGCTAAGGAGGTTCTAAGTCCTGATTCGCGTCTGAAACTGCTTACGTTACTACATATCTATCATCGGAGACTTAAGAACATAAGTTATTTATCGAAAATAACGAAAGAGTTTGAAGGCGAGTTCTCAGAGCACCCGTTTTTCCAGCACTTGAAAGTAATGACGCTAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAGTCCCAATAGGGAATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 12 939614-941157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================================================================================================================================================================================================================== ================== 939614 26 100.0 43 .......................... CACTACCACTACTACAACCACAACCACTATACAACTACACACA 939683 26 100.0 39 .......................... TCCGTCCGATAGGATCACTCCTTATCACCTCCTTTTTAA 939748 26 100.0 44 .......................... ATTTCGCTCTCCTCATGTCCTATTACTCATGTACACTTTTAAGT 939818 26 100.0 38 .......................... CTATTTCATTCTGGAGGAGGCGGTAGCGGTGGCAGTAA 939882 26 100.0 40 .......................... GAACAACTTCAACGTAAACGTACCGAGTTTCGTTAACTTT 939948 26 100.0 41 .......................... CCCGCAACCGCTCCTTCCGCTATATCCTCGAGCGTGATTAT 940015 26 100.0 38 .......................... TTCTAGTTCTTCGAGTATCTCAATGAAGTTCTTTAGGC 940079 26 100.0 43 .......................... GAAGGACAAGATACGAAAGTTCCTAAAGGAGAATGAATATTTT 940148 26 100.0 38 .......................... CTCGCTCTGATCCGGAAGCTCGTAATACAATAGCACTA 940212 26 100.0 37 .......................... CCACCTCCGCAACAAGGAGGAGGGGCAAGTCGAACGT 940275 26 100.0 42 .......................... TCCGCATTGTCTCCATAACCTCGCACAGATCGAATGTGGTCT 940343 26 100.0 40 .......................... AAGCTCTAGCGAGAATTCTCTTAGACAAGAAAGAATGGGC 940409 26 100.0 39 .......................... TCTAGACAATAAATATGCTAAGCTCTTCTTATCGAAGAA 940474 26 100.0 38 .......................... TGCCATCCCGGTCACCGAATATTAGTAGTGTGCACTTG 940538 26 100.0 41 .......................... ATCAAATTCAGCGAGGCTTCTTTAAGCGCATCGATTAGCTC 940605 26 100.0 41 .......................... CTATCGATGAGGTAAACGAAAAGAAGCGCCTCGGTAATGTT 940672 26 100.0 41 .......................... CCGTAAATGTCATATTCGTGTATATACTCGAAAACAATTTC 940739 25 96.2 40 .....-.................... AAGGTGGGAGTGCAATTCCCCCACCTTTCATAATATTCGA C [940747] 940805 25 92.3 43 .....-........T........... GGGCCGAGTATTCGTTCAGCGTCGTGTTCGGTCCAGAGCTCTT C [940813] 940874 25 96.2 227 .....-.................... GAGGAAGAGTAGTGGACTTTATTGCTACGTAGGGGACCTCATAGGATGTAGACCCTTGCAAATATCTCTGTAGGAAGGGAGCTTCGCGTAATACCACTTGTACGAGGGACCGGTTGGGATTCTGAACCCGAAAATTCCGCCCCTTGAACTCCGATACCAACAAACGTTGTCTTCAGAGAAAAACTGTTGATGAGAATAACTCTAGTAATTACATAGCCTGGAAAAGA C [940882] 941127 26 88.5 0 ...........T....CT........ | T,CTT,C [941132,941149,941154] ========== ====== ====== ====== ========================== =================================================================================================================================================================================================================================== ================== 21 26 98.7 50 GTAGAGATCCAATAGGGAATAGAAAG # Left flank : TTATTCATCTATCTCATTCACCATCCCATGGTGAATGCCCATCTCCACCTCTTGTCCAAATTCATTTTTCCATTTACTCACAATTAATTCTCTCATTTCCTCAACCTTAACCATTTGAACTCAGAAACAATGGTCTCCTTAAGCACCTTTAGTTTCTACCAGACTTCCCAATGCTCAATTCCATTTGGATTCAATCAATTAGCATTGTATTTGCAAAACCAAACAAGATTTACCAATCCAGAGTTTAGACCATCAGTACAAGGTCCTTTCAAGATCGATCTTTACAATGAGAAGGAGCTTAGATGGGTTAATAAGCGATCATGAGAACTCCAATGATCATGGGGATTTCTACTCCAGCCTACCTTATACAAGTACATACATGCATATATTGGACAACCAAATGGGTTGATATTCGAAGAGGAAAGGTATGGTTGTGGAAAGGAGAGCTAAGGAAAGGGTTAAAAGATGGAGAATTGGTTTGTTTAAATAGGAGGGCAACG # Right flank : GGGTGCGTAGGATTGTCGAGGACGGTTAAAGCTAGGTATGAAAAGGGCGTTCTGAAGCTACTGGATCCAGTGGAACTCAGAGGAGACGACGAGGTAATAGTAGGCTAGAGACCTCCGAAGATAGGGTTAGGTGGCTTAGGAAGCGCTGTTGAATACTCAGCAAAACAGCAATTAGGAGATAGAGGAGCTACTGCTCGAAGTCGAAGTTCGAGAGGCTATAAAGTATAGCTTGGAAAACACGATAATGAAACTTATTGATACTAACGTCTTTATTTCGATATATCCTTAACTGAAATAACGTAGAGTCACGAGAGAGACTATAAGGTAGTATAACCTTGCGCTGAGCGACTTCGTCGTAGCTCTGACGTACAAGTTCAATTAGCTCAAAGTAGTCCCTTAACTCGTCAATAGGTTATCAAGGTAATTCTAAGTAGAGTGTGAACCAATATGGGCTCCTACAGTAATTTAAAGTTGAAACTTGCTCTTCATAAAGAGAAACT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAGATCCAATAGGGAATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 13 1030432-1029820 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 1030431 26 100.0 36 .......................... TAGCTCTAACTCACTCGCTTCTTCTAGTGCTTTTAT 1030369 26 100.0 40 .......................... TTTTTATATCCCCCTCCCTGACGGGAGGGGGCGCCTCAGG 1030303 26 100.0 42 .......................... ATTCAAACATCGATACCTCCCGCACCTAACGTACCTGTCAAT 1030235 26 100.0 41 .......................... TCCCCTTCCCGATCTCTTCACTTCGATCAACACTAGATTCT 1030168 26 100.0 40 .......................... ATCGCAAAGCTCGGATGACCGACGACCTTCGCTTCGATCC 1030102 26 100.0 38 .......................... TCACTTCTTCTACGGCCTTCGAGACCACGTCAAGTTCG 1030038 26 100.0 37 .......................... ACATCCAGAACTGAAGACCCCCGCTAGTTGTTGTAAT 1029975 26 100.0 36 .......................... TAGCACTACGCTTTCCGAAACCATTTGACGTGATGA 1029913 26 100.0 42 .......................... TCTGAATATCGTTTATGAAATCCTTCTCAACTAGATAGACCA 1029845 26 96.2 0 .....A.................... | ========== ====== ====== ====== ========================== ========================================== ================== 10 26 99.6 39 GTAGAGTCCCAATAGGGAATAGAAAG # Left flank : TAATTAACTTTAGCTATTCACCATCCAATGGTGAATACCCATCTCCACCTCTTGTCCAAATTCTATTTTCCATTTACTAACAATTAATTCACTCATTTCTTCAACCTTAACCATTCGAATTCAAAATTAATGGTCTCCTTAAGCACCTTCAGTTTCTACCAGCCTTCCTAATTGTTAATTCTATTTAAACCTAATCATTCAACATTGTATTTGTAAAAACAAATGCAATTTACAACTCTGGAGTTCGGACCATCAGTACGAGGTCCTTTCAAGATCGATCTTTACAATGAGAAGTTGCATTGAGGGGTTAATAAGCGATCATGAGAACTCCGATGATCATGAGGATTTCTACTCCAGCCTACCTTATACAAGCATATGTATACATATATTGGACAACTACTTGAGTTTAAGTTCTGAGAGGAAAGGTGTGGTTGAGGAAAGGCAAATGAGGGGAAAGGGTTAAAAGATGGGGAATTGATTGTTTAAATAGGAGGGCAACG # Right flank : CCCTCCAAAACTTCGCCGTACTGGGTGGCTATGTGTTTAGTAGAGATCCATGATAGAAAAACTCTTTCCTTCAAAAATGAATAAAAAAGTTCATTCAAGCGCGCGAAAACGAATGGATAAAATTGGTTCCGAATCGAAGCCAACTCGAAGTTCACTTTAAATTTCCAACTCGTCTCTGTAGAAACTGGCCCCGTAGCTCAGCCAGGAGGAGCGCGGGCCTTCGGAGCCCGTGGTCCCGGGTTCAAATTTCGATGGGCTCGCCACCTATATACCATCACTATTATAAAATTTCTCCTTGCAAAGAGTGAAGTTACAATTCAGTATGCTAAAACTATGATTGCTCCTCCTTCACCAAGGATATCGTAGTTGGTAATCCTAGTATGCTAAGGGATTACCTTGAGCCACGGAACTCGCTTGAAGTCTTCGTCGAACGTTAGAATAGTATCTATACCATAATGCTTAGCGGTTACTGCAATCAAGGCATCTCCTGGGAGTAGGCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAGTCCCAATAGGGAATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 14 1060507-1061471 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 1060507 25 100.0 43 ......................... GAACGCGCTTTCGAATAACTTTACGTCGACATTCTCTATCTCG 1060576 25 100.0 36 ......................... GAAGCACAACAAGAAAGGCTTATTCGATCTATCAAT 1060638 25 100.0 42 ......................... GATGAACCCTATCTCGCTCTGATGTATTATCAATACGAAGCA 1060706 25 100.0 41 ......................... GTTAATACCAGGCTCGGGAACGAGTGCGACAGCAGAGATTT 1060773 25 100.0 41 ......................... GCATTTCGTACGTATGAGAAAGCGTTATGACTGACGTAAAC 1060840 25 100.0 39 ......................... GATCCCAATATACTCTCATCGGTTCGTCTTTGTTGTTCC 1060905 25 100.0 43 ......................... GTTGATTTGTTCAAGGCTCTTGCTGACGACGTCATACATTTCT 1060974 25 100.0 42 ......................... GCTTTCTCATGTAAACTCTTTTCCTCATCTCGAAATGTTTTC 1061042 25 96.0 44 .....G................... GTTGTAATACTCACTAAGGTTTTCGATGTTGACAGGTCTCCAAC 1061112 25 92.0 38 .....G.......T........... GAATTGGACAGGAAGAAGGTTCTCTTCAGGAACTACAA 1061176 25 100.0 40 ......................... GTTAACTATCCTGTCCACATTGCAATCCTCCACTGCCAAC 1061242 25 100.0 41 ......................... GAAGGTCTTCGTTAATCCTCCCATTCCGCCACCGGACATAC 1061309 25 96.0 42 .............T........... GCAAACTGAAATTGAGAATCATAAGCGACAGAGGGAAGGACG 1061377 25 92.0 44 .....GA.................. GCAAATATATATGTAAATTCCTTCAAGGAAGAGAAATAGGAAGT 1061446 25 92.0 0 .....G..................A | C [1061453] ========== ====== ====== ====== ========================= ============================================ ================== 15 25 97.9 41 GTAGAATCCAATAGGGAATAGAAAG # Left flank : GTTGCTTTCAAACCCATTCACCATGGGATGGTGAATCCCCATCTCCACCTCTTGTCCAAATTCACTTTTCCATTTACTCACAATTAATTCACTCATTCCCTCAACCTTAACCATTTGAATTCAGAATTAATGGTCTCATTAATCACCTTCAGTTTCTACTAGCCTTCCCAATGGTCAATTCCATTTCAACTCAATCAATTAGCATTGTATTTGCAAAATCAAACTCGATTTACCACTCTTGAGCTTAGACCATCAGTACGCGGTCCTTTCAAGATCGATCTTTATAATGAGAAGTTGCATTTAGGGGTTAATAAGCGATCATGAGAACTCTAATGATCATGGGGATTTCTACTCCAGCCTACCTTATACAAGCACATACATGCATATATTGGACAACTACTTGAGTTTAAGTTCTGAAAGGAAAGGTATGAATGTGGAAAGGCAGATGAAGGGAAATGGTTAAAAGGTGAGAAAGAGGTTGTTTAAATAGGAGGGCAACG # Right flank : AGGTAAACCTACGGGACTGCCCGCAAGCTGACATATAAAAATGACTGTAAAGACCCCAAAGGGTACGAAAACCGTTAGGATAGCCGACGTTATGGGGAAACCTCTTACGGAATTGGCAAAGGAATTTTGGAAACGATTAGAGGAAAAAGAGAAAAAAGAAAAAGAGGAAAGGGATTGAAAAACGCAGCAACATCTGAACAACAAAGCGCCTCCGTACGTTTCAGACATCAAGAACGCAGTCCTCTTATCGGCGTAACGATTGAGAGCTTTACCGGAAACTTATACCAACTGTTCTTTAGAAGCAATTAGTGGACCGAGGGGGACTTCCGAGATGCCCAAGGAGATTCCGTGGCACAAGTTAACTCCAGAAGAGAGAATAGTGGTTCAGTACTTCTTGGCACATAAATCGATAGGGGACTTGATACTACTTAGGGACTTGGAACTGAAGGGCATCAAGAAGCCAATAAGAGTGTTGGAGAGTTTATTGAACAAAGGGATTC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAATCCAATAGGGAATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 15 1124916-1124160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 1124915 26 100.0 41 .......................... TTCTCCTCTTCCATCCGACCCACCTCACGTTATACTACTCG 1124848 26 100.0 38 .......................... TCTATGTCGTCGACGATCTCAATGAATTCTATCGTAAG 1124784 26 100.0 40 .......................... CTTGCTCCTGCTGTACGCTCTGACACTTATCGCTAGTTCG 1124718 26 100.0 40 .......................... TCACTTAGTTCAGCTAACTTCGTTGCGGTTACTTGACCGC 1124652 26 100.0 40 .......................... AAATTTCCTTTTCTTCTTCTCTTCTTCTTTCCAATCCCCT 1124586 26 100.0 40 .......................... TTTCATGGCAAATTACAGATCCGGCCCATTCCTATTAATT 1124520 26 100.0 43 .......................... CATCTAAGAACATTCCATCCAATTCCGTTGATTGACTCTCTTT 1124451 26 100.0 40 .......................... ATCGACGAGAGTTCAGAGAGAATTCTCTTGTTCTTTTCGT 1124385 26 100.0 43 .......................... TCTGTCGAGTCGGATTTCTGCAACTGTGTGTTCGTTCAAAAGT 1124316 26 100.0 42 .......................... CGAACCCCTCCTCAGGCCTGGCGCTCAGGCCTGACAACTCGT 1124248 26 92.3 37 .......C....T............. AGTTTATGTGCCCACTTGGTGGGAATCCTTATATAAA 1124185 25 84.6 0 ...A..-.....A............T | T [1124172] ========== ====== ====== ====== ========================== =========================================== ================== 12 26 98.1 40 GTAGAGATCCAAGAGGGAATAGAAAG # Left flank : TTCCATTCCCAATTTATTCACCATCCCATGGTGAATGCCCATCTCCACCTCTTGTCCAAATTCGCTTTTCCATTCATTCATAATCAATTTACTCATTCCCTCAACCTTAACCATTTGAATTCAGAAACAATGGTCTTCTTAAGCACCTTCAGTTTCTACTAGACTTCCCAATGGTCAATTCCATTTCAACTCAATCATTCAACATTGTATTTGCAAAACCAAATAAGATTTACCAATCCAGAGGTTATACCATCAGTACACGGTCCTTTCAAGATTGATCTTTACAATGAGAAGGAGCTTAGAGGGGTTAATAAGCGATCATGGGAACTCTGATGATCATGGGGATTTCTACTCCAGCCTACCTTATACAAGCACATACATGCATATATTGGACAACTAATTGAATTTAAGTTCTGAAAGGGAAGGTGTGAATGTGGAAAGGAGAGCTAAGGGAAAGGGTTAAAAGATGGAGAATTGGTTGTTTAAATAGGAGGGCAACG # Right flank : ATATTGAACTTAGTAAATTTGCTAATATCTCGCGTATAGTCCTAACACTGAGTGGAAAGAAGGCATTCCGGAACCTTCGAAACGTAGAACGAAATTACTAACAGAGCCGAATAAGATTGGAAACGAAATTTCAGTTTCCAATGCAGTTTTAAGAAGTTCTTCGTTGAAAACTTATTTTCAACGTAAACTGTAGTCAATGTTACTGGAATACTGCTTGAACGCGTTTTACCCTAGGCAAAGATCAATATATAGGGTTTCGAAAAGTTGAGACTCGCCTTAATTACGCTCCTACTCCCGTCCATGATACTCGCCCTAACGCTGAAGTATAACGTAATGGCAATACTCAAAGACGGTTCAATAATAGGTTACGGGATTTTAAGAATTGATTACGTTCCACCTTACGTTACCTCAGACGTAAATTGGCAAACGTATTTTTGCGACCCGTATTATTGCGGAGCATTCGAAACGTTACTCAATCCCGCCAGCAAGTTCGTGGCATT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAGATCCAAGAGGGAATAGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 16 1256467-1256161 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006867.1 Ignicoccus islandicus DSM 13165 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================ ================== 1256466 27 100.0 37 ........................... GCCGCCCTGTCCCTCGCTTTTTGAAAAAGAGAACTTC 1256402 27 100.0 43 ........................... GGAACTGGGTTACGAATTCGCCTAAACAATTTTCTTCTTCCTT 1256332 27 100.0 41 ........................... TTCCTTTTCAGGGTCTCTGGAATCGTTAGCTACCTCGCTTT 1256264 27 88.9 48 ............T.....A.A...... ATCTTAATGTTCACCAAATAGAAACAGCTACTTTACTACTTCAACTTA 1256189 27 81.5 0 ............T....T.C...G.A. | T,T [1256175,1256179] ========== ====== ====== ====== =========================== ================================================ ================== 5 27 94.1 42 GTAGAGATCCAAGAGGGAGTGGAAAGA # Left flank : ATTCATGACCTCCCTCATTCACCATCCGATGGTGAATCCCCATCTCCACCTCTTGTCCAAATTCGCTTTTCCATTTACTAACAATTAATTCACTCATTTCCTCAACCTTAACCATTTGAATTCAGAATTAATGGTCTCCTTAAGCACCTTCAGTTTCTACCAGCCTTCCTAATAGTTAATTCCATTTCAATCCAATCGTTCAACATTGTATTTACAAAAACAAACAAGATTTACCACTCTAGAGCTCAGACCATCAGTACGTGGTCCTTTCAAGATCGATCTTTAAAATGAGAAGTTGCATTAAGGGGTTAATAAGCGATAATGAGAACTCTGATGATCATGGGGATTTCTACTCTAACCTACCTTATACAAGCATATGCATGCATATATTGGACAACTAATTGAGTTCAAGTTCTGAGAGGAAAGTATGGTTGAGGAAAGGAGAGCTAAGGGAAAGGGTTAAAAGATGGGGAATTAGTTGTTTAAATAGGAGGGTAACG # Right flank : CCGTATAGATGAGCTTTCGCTTACGTTTTAATTCAAGTGGCGCCTACCAAGGGACCGGTGAGAAGAAATCAAGACTTACAAAATGGTCTTAATTGTTGGAGATGGAATGGGAGATAGGCTCGTACCTTCCCTTAACTACAAAACCCCTCTACAAGAAGCTTCAACTCCTAACTTGGATGAGATGGCGAGAAGGGGACAAACCGGCCTCATTAACGTAATAGCTCCTGGAATACCTCCCGGTAGCGATACCGCACACATTTCGCTATTTGGTCTCGATCCATTTTTGTGGTACGAAGGAAGAGGTCCTTTCGAAGCGATGGGAGTGGGAGCGAGTCTGACTAAAGGCGACGTTGCACTGAGGGGTAACTTTGCAACAGTTAAAGAAGAAGGTGGAAAGTTAATAGTAGTAGATAGGAGAGCTGGCAGGAAAGTAGACGAAGCTAGTGAGCTAGTAGAGGTGCTAAATGAGAAGTTAAATGAAGTAGACGGAGTAAAGGTCG # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAGATCCAAGAGGGAGTGGAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //