Array 1 129630-128745 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDDL01000003.1 Escherichia coli strain VRES0493, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 129629 29 100.0 32 ............................. GAAAGGTTCCGGTTCGGCACACTGGAGAGCGC 129568 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 129507 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 129446 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 129385 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 129324 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 129263 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 129202 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 129141 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 129080 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 129019 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 128956 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 128895 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 128834 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 128773 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 156701-155330 **** Predicted by CRISPRDetect 2.4 *** >NZ_UDDL01000003.1 Escherichia coli strain VRES0493, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 156700 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 156639 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 156578 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 156517 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 156456 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 156395 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 156334 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 156273 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 156212 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 156151 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 156090 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 156029 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 155968 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 155907 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 155846 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 155785 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 155724 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 155663 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 155602 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 155541 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 155480 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 155419 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 155358 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //