Array 1 20-4589 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCA01000026.1 Fischerella major NIES-592 NIES-592_Scaffold_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 20 37 100.0 35 ..................................... AGATTGTTGATCTTACTAGGATTTGACTGAATAGG 92 37 100.0 37 ..................................... GAAGTCAGTGGATGATTAATTTCTTTTGCAACTTTTT 166 37 100.0 35 ..................................... TATTTTTGAATAATCTTTTGATAGATGCGGATTCA 238 37 100.0 39 ..................................... TTCTATATATAGATGATTTGAGTGCCTTAATATGCAGTT 314 37 100.0 37 ..................................... ATCAATATTAGTTTTAGGACTTGTTGAGCAGTACACG 388 37 100.0 37 ..................................... ACCAACAACGAAGTTTTTGATGCTGGACTTTACTACT 462 37 100.0 42 ..................................... GCAAAAGCTACTTGTACAAAAATTCATGTACCTTATATAAAA 541 37 100.0 38 ..................................... GAAAAAGTATGTCCGGGGATCGCGAAACTTGAAAATTT 616 37 100.0 33 ..................................... AGAACTTGGCTTTTGGATGAGATAAAGGATGAT 686 37 100.0 34 ..................................... TGAAAATATTTCTCCTAATTTTGGAGAAATTTAT 757 37 100.0 39 ..................................... CAATTTGTGGGTAGATGATTTTCAGGCTGCAGGCATAAG 833 37 100.0 35 ..................................... AAGAGATTTGTAAGTGTCACTAATAGCGATCGCTG 905 37 100.0 33 ..................................... TTATAAAATTTAGATTCTAATTCTATTCTATAT 975 37 100.0 37 ..................................... TTTGAATGATACAGTAGTACCTTATTTTGAAGAAAAA 1049 37 100.0 40 ..................................... TAAGAGTTTTGGGCTTTTAATAGCTCCAGAAGATTTAATA 1126 37 100.0 35 ..................................... GTTTGAGGGTACAGTGGATAGCCAGCTACAAGCTA 1198 37 100.0 39 ..................................... AAATCATCAAGGGTTGAGCAGTAGATAAGACTAGCGATG 1274 37 100.0 38 ..................................... GCCACGCCGACCTGACGAGAACGAGAAGCTATACTCTA 1349 37 100.0 36 ..................................... AACCTGGTCTAACCCAAACGGGGCTAGTGCTTGCCG 1422 37 100.0 35 ..................................... CGCACCCACGCGCCAGCACATACCAGCGATCGCAC 1494 37 100.0 36 ..................................... AATAATGGTACTTACGTGCCCCCTATTCCACCTATG 1567 37 100.0 35 ..................................... TACAGCATTAGCTGATTATAAAGAATTAAAAGATA 1639 37 100.0 35 ..................................... TTTGATTATATATGGTAAATCTGTCAAGCAGGAAA 1711 37 100.0 35 ..................................... GAATCACGTAAAGAACCATCAAAAAGCGCCACAAT 1783 37 100.0 35 ..................................... AGTCTTTAAGAAATCTTTTTAGATTATCACCTTTT 1855 37 100.0 35 ..................................... CCAGCCATTCGGAAGGCTGGCATCAATCAAGATAC 1927 37 100.0 34 ..................................... AAAGCTGCTTGCTCTCTAGGATCAAGGCTATTGA 1998 37 100.0 35 ..................................... TTAGGTAGTAAAGATTCTATTTTTCCTGATTCATT 2070 37 100.0 35 ..................................... TTTTCAGCCAATTACCTAAATGGATTGCTGCTGCC 2142 37 100.0 34 ..................................... AGTATTAAGGGATCATTTTCTAAGTGCTCGTAAA 2213 37 100.0 37 ..................................... TTATATTCTCTTAATCAAATTTATAATTATTATTCAG 2287 37 100.0 37 ..................................... TCTTAAGGCACTCAAATCTAAGAATATAGATTTGAGA 2361 37 100.0 32 ..................................... AGCTGGCATCAATTAGAATAGAAAGAGGATCC 2430 37 100.0 36 ..................................... CGCCGCCTATTCACTTGATGAAAATCTCGGAGGATT 2503 37 100.0 35 ..................................... ATCATATGCGAACTTCAAAAATATGGATACATAAT 2575 37 100.0 35 ..................................... AAAAATTTCTCCAAAAATTATGTGCTTTCTTTGCA 2647 37 100.0 36 ..................................... TTTATCTATCATTTTAATTTTTTCGCATTATCTTTG 2720 37 100.0 34 ..................................... TATTAATTTTCAATTGCAATAGGATAATTAAAAG 2791 37 100.0 36 ..................................... ATTTTGGATTTATTATTTTCGATAATAATATCCAAG 2864 37 100.0 34 ..................................... CTTTTATAATCAAACATATTTCATGTACTTTTTC 2935 37 100.0 35 ..................................... CAGTATCTTTGCTTATTTTTAAATAAGGATTTAAA 3007 37 100.0 37 ..................................... TCAAACTGGTCTTCTGAAACACTAAAGACAGTGCCGT 3081 37 100.0 34 ..................................... CAGTTAGCGGACTAGCGCAAAGCCTCACCGATTT 3152 37 100.0 37 ..................................... AAGATTTGAAGCATCTATTATGAAAAGTATTTTGGGT 3226 37 100.0 35 ..................................... CCAAGCGGGCGATCGCTTCCCGCCGTTCCAGCTTC 3298 37 100.0 37 ..................................... TTTATCTACAAATATGGCCCGGATGATTGGCACTTTC 3372 37 100.0 36 ..................................... CAAATCGAGCATTATTATAAGATCCTTTCAATAAAT 3445 37 100.0 36 ..................................... TAGGCCCCTTGGTGGATTCTCAAGAGATAAATTTTA 3518 37 100.0 34 ..................................... CAAAGTGGAGCTTTCTACTCGCCATCAGAAATTA 3589 37 100.0 40 ..................................... GGATAGTATGTTTAAGGGAAAGGTCAAAATTGTTTTTAGA 3666 37 100.0 35 ..................................... CCCAGAAACTTTTTTCAAATCCATCTTCATCAATT 3738 37 100.0 40 ..................................... TTTCTTTCAATTCCTGGGATAGGTGGCATAGGAGGAATAG 3815 37 100.0 38 ..................................... TTTCCAACATCTGCTGAATTGAAAATAATTCTCGCTAG 3890 37 100.0 39 ..................................... AGCTACCATATGAAATCTATAAAATTCATTAGAGGGCAA 3966 37 100.0 35 ..................................... CTATGAGGACAAAACCATCAGCTAACTTATCGCTC 4038 37 100.0 35 ..................................... TCGCAGCATTTAAATTTGCTAATTGATTTGCAAGA 4110 37 100.0 32 ..................................... ACACAAAGATTATCTCGATTTATTGTCTGGAA 4179 37 100.0 37 ..................................... TCAGAGCAATCCCAATTTTTGGATGCGCCGCGGCTTG 4253 37 100.0 39 ..................................... TTAACTGGCAACCTTAAAGTACGCAGGTATTTATCTCCA 4329 37 100.0 38 ..................................... AGATCCTGTGCAAGATTCATTCCCTCTTGAAGGGAAGG 4404 37 100.0 36 ..................................... GAATAATTTTTCTCAGTGTTGACTATTTTTTGAGAA 4477 37 100.0 39 ..................................... GAAAAGTATTGTATCAAAAGAGGTACGTAAGTATTGCGA 4553 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ========================================== ================== 63 37 100.0 36 GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAT # Left flank : AAGGCTTCTAAATTGAGCAG # Right flank : CCCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGGTTTTATTTTATCTTTTAATTGACAAAAACTTAATCCTTGGCGCTCTTGGCGTCTTGGTGAGTCCACTTGCCGTCTTGGCGGTCTCCGTCACGATGGCAAGGTGGCGAACCCGGAGGGTGGTTCATTATTCATCCCCATATTCATCCCCATTTTATGCAACGCCCTGGCATTAATCCCTATTTGTTGACGTCTTGTAAACTTACACAACAACCGCCAAGCAAGACGACTATAAAATTTATTAGTCTACTTCAAGTAGACTTGAACTATTAGCTCGCAGTTTACTTGCGGGCTTTCAGGCTTTCAGGCTTGCATATTCAAAAACAAAAAGGTAAGAGAAAAGATTTTTCCCTTACCCAATTCTCATTACCCTTGACACCGAAGCTTTAGTAAGCTCTGCGAGTAAATTGGTAATATAAGAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 256326-256944 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCA01000001.1 Fischerella major NIES-592 NIES-592_Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 256326 35 100.0 41 ................................... TCTAATCCCACCCAAATCCCAGTGGCGTTGTCTAACCCTAT 256402 35 100.0 38 ................................... AAAATTGGTGATTAGTTTGATGGTTGAGGGTGCGGTGA 256475 35 100.0 40 ................................... TTATGCGCTATCTGCAGTGCGATCGAGCACTAGCGGAATG 256550 35 100.0 36 ................................... TTGGAAGCAAGTTCTTTGAGATAATAAATCATGAAG 256621 35 100.0 41 ................................... CTTTTGCGTATTTGTCATGTGTATCTTATGGATACCCAAGG 256697 35 100.0 36 ................................... TCCTTGCGGGGGTACGGTGATAATAAGCTGTACGCT 256768 35 100.0 35 ................................... ATGTAGATGCTTTCGGTTTAGAAAGTCCTGTAGAG 256838 34 97.1 38 ........-.......................... AAAATTTCTGAGATCGTTTCTTACAACCAACGACTGTG 256910 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 9 35 99.7 38 GTTTCCGTCCCCGTTAAGGGGAATTGAATGAAAAC # Left flank : AAACGGCGGTGTCCGTATCCAAATAGCCACCACCATTAGAGGCTAATTCTTGGACTGCTTTAATATAACTTGGGTTGTGTGCTTCCTCCATTAGCGATATTAAAGGACGCTTTGCCACTGGCGTGGGCGATCGCCATTCAATTTGCGAAGCAAATGGCGCAGTTTGTAGGGCACTAGTAATAGCGGTTAAGCGTTCTGGTTTCTCTGGATGGAGATACCCAGTTTTGTGATCCAGAAATTCATCAGAATAGATAACTGTAAACATAGCCCAAGCAAGATTGGCAACGGGATACTGATTGAAATTGTATCTTCCCTAATCTTCTGTGAAACTGATGATTTCGTGACTTGGTTTATCAGGCATTTCTAGCACAACTGAATAAAGTGACATCCTCCCACCACTGACTCAGAGTACCGAGTACAGTGGGGGCTTCCAAGAATCACTTCCTGGGTTTTCCTGCTTCATTATGAGCTAAATCGCTTACCTCAATTGCATTATCCAT # Right flank : CTCTACTCTCCTGGAACCCTTGCCACAACTGAGTTTGAGAATACCATTTTCGCGGGGGGTCTATATATTGCTGTCAATAAGCTTATTTTAATGATCAAAAGCACTGTTTACAGCTACCTTAAACCCTTACCTAGCAATGCTTTCGCGGGGGTCAACGCTAGAATCAGGGTTTGGGAGTCTGTCATACCCCCGCGAAAAATTTAAGTATTGAAAGTCAAAAAAATACACCTTTGTTCAATTGGAAACTTTTAGATTAAATTGTCAAGGTTCTGTTAAAGTTTTACTTTGACGGCTAATAGTATAACAAACTACTCCTGACCAAACAAGGCAAAAGTTAAACTTTTAACTTGTCAGTTTCCCCCTGACAAATCCATGCTCCCCAATAAAAGGGATGCTCCAGTGGCGTATCTTCTTCATGGCAATCAATTTTACTTTGTGCTGACAACTCGTTCACCCTCAATAGTTCCTTCAAAACTTCTAAACCCAAAGCAGACTGCCGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCGTTAAGGGGAATTGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 264540-265094 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCA01000001.1 Fischerella major NIES-592 NIES-592_Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 264540 35 100.0 36 ................................... GTTTCCAGCTCTTCCGGGTCAGGGCTATGCATAAAT 264611 35 100.0 37 ................................... AATTTGGGTTAGTTATTCATGACCTGGAAGATTATGA 264683 35 100.0 40 ................................... ATTGACGCTGCTCCTGTTCTGCGGTTGCAGTAGGAGTATT 264758 35 100.0 39 ................................... TTGAAACATTCCTGCACGTTCTTCCCAACTGTGCTGTTG 264832 35 100.0 49 ................................... GTTCCAAACCCGTTGATTTCCAAGTGAGCCACCTGATTTTCCTGCAACA 264916 35 100.0 36 ................................... GCACCGTTGAAACACCAGTCAAAGCAGCAGCAGCAG 264987 35 100.0 38 ................................... TTTGCAGGATAGGAAGCAGTTGCATGAGCGGTCTGGAT 265060 35 82.9 0 .....C.T......C...T.........C.G.... | ========== ====== ====== ====== =================================== ================================================= ================== 8 35 97.9 39 GTTTTAAATCACTTACCCCTCACGGGGATGAAAAC # Left flank : TTGAAAAAGTTTCTCAAGCACTGGGAAGAAAAGCTGCAATCTGAGTTAACGCACCCAAATACAGGATATAAAGTTAGCTTTCGCAGGTGTTTAGAGTTACAAGTGCGGGAGTATGTAGCTTGTCTGATGGGAGAGGTGAAGATATATAGACCAATGATTTGGAAACCTTAATAGAGAGATTGCATTGTGTTGGTTGCTATGCTATTGTTTACACCAACACCTGTACCTTGAAAACTTAATCAATACATATTCTCTGCTTGTAACCTGATAGTTAGTTTCCTTAAGGCATTTTGTTAAGAAGTGTAAACTGAGGGGGTCGTCTAACAGACCAAAGGCTGATTGTTTCGTTGATCCCCTCAGATAACTTAATGTGTCAGGGTTTGAGTTACTTGCAGACTCTAGTTATTGTCAATAATAGTGGTTTATTGACAGGTAAAATAGACCCCCCTCAGTTTTACAGTTCTGTAAGCTTTATTTGGCAAGCTTTCTGTAAGAGTAGA # Right flank : CCACTATCGTTAAAAGCAACAGCGCCTTCAGGGGGACGGAAACATGTAGAGACGTAGCAATGCTACGTCTCTTCCCTTTCACGGGGATAAAAATGCTGGCGTTGCTGAATTTGGTCACACCCGTAAATTGTAAATTCATATTTTGATTCAGCAACGCCAAAATGCTAATCATAACAATTTCAAAATTCAAATATTTAGTTTTTATTTCCAAACATAGAGAAACCCGGCTTCTTGAAGAAGCCGGTTTTTTTGATATTTGAATTTTCACAACCTATCTGAAATTGCTGTAATCACAACTGATATAACTCATATACGAAGTCATATAAAAATTACTTGGACGCAGATACGAACTCATATATGCCTTTGAGAAGATGAAATTAAGTAAAAAGTAAAAATTTCAAATGCAAAAAAATCTTATCTTTTTACTTTTTACTTTTTACCTTTTCTTTTACTTCATTTAATCTATGTCCACAATTTATATTACCGAGCAAGATGCAATG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAATCACTTACCCCTCACGGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 31100-28074 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCA01000027.1 Fischerella major NIES-592 NIES-592_Scaffold_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 31099 37 100.0 37 ..................................... TTTTGCATTATTAATATTATTTCTAAAAGAAAAAAAA 31025 37 100.0 39 ..................................... AAAAACAGCAAGAAGACTACACTGATGTTTCTCATATAG 30949 37 100.0 33 ..................................... TCTTAATTATGAAAGATAATATAAAGAATTTTC 30879 37 100.0 33 ..................................... AAATCAAATATGAATAATTAATTATTTTCACGA 30809 37 100.0 34 ..................................... GATTCAACTACCTTTACTCGGTTTAAGCTAAACT 30738 37 100.0 32 ..................................... CAATACCTACATTTTTAAGAAAAATTTTTAAA 30669 37 100.0 37 ..................................... CCTTGACTTACCTATCTTAGCCTCACCAACTAACATG 30595 37 100.0 33 ..................................... CTTGACTTGACTAAACGGGCTGGGGTTCTGGCA 30525 37 100.0 31 ..................................... GAAAACTACTACTAGGTATACCGATGGTAAG 30457 37 100.0 37 ..................................... ATTAATATTCTCCTCCAAAAAGCCAAATAATTATGGG 30383 37 100.0 39 ..................................... AAGATACTACATAATAGATTTATGCAAATAATTTCTCAT 30307 37 100.0 38 ..................................... TTTTTATTTAGATGATTCATCTAAATATTCAAAAGAAG 30232 37 100.0 35 ..................................... TATATAAAAAAAATTTGAGAACCTGCTTTCTACGG 30160 37 100.0 35 ..................................... TTTATTTTTAGATAAAATTTCTTTAAATATTAAGA 30088 37 100.0 35 ..................................... GCTAGTACCAGAACCACCCAAGCCTTGACCAGGTG 30016 37 100.0 36 ..................................... GAAATCTGAATAATTATTAGGTGAATCAATAATTTT 29943 37 100.0 33 ..................................... TGCAAGGCATATTTTTTGATCTAATTCCTTCAA 29873 37 100.0 34 ..................................... AAAATCTTACATAATAGATTTATGCAAATAATTT 29802 37 100.0 35 ..................................... CGCTTAGATACTATCAAGGATGCGATCACTGGTAT 29730 37 100.0 41 ..................................... TTTGGGAGCCTGAAAATGATCATGCTCCAGGAATTCGTTGC 29652 37 100.0 42 ..................................... ATCAATTTTGCACATCAGATTCTCCTTTAGGTTATTGGGAAG 29573 37 100.0 35 ..................................... TTACTTCAAATTTATTTAAAATTAGATCCCATCTA 29501 37 100.0 38 ..................................... AAAAAGTATATTGAAAATCAACGCGGAAAATAAGAGAT 29426 37 100.0 38 ..................................... TTCTCGCCTCATTTTGCACAGAAACCACATAATTTTTG 29351 37 100.0 38 ..................................... AATTGTATTCAGTACAGGGTTAAATAATAATTTTAAAC 29276 37 100.0 38 ..................................... GCCGCAAATCCAAATATATCCATCATTACGCATGGCAA 29201 37 100.0 36 ..................................... TCTGTATCAGCAGAAAAAGAAGCACAAAATACAGTC 29128 37 100.0 37 ..................................... GCAAAAAATCGAGTAACAAAGACTCCACCCTTGGGGG 29054 37 100.0 37 ..................................... ATTTTCAAAATCGGTAAAACGCTCGATAGCCATATCA 28980 37 100.0 38 ..................................... AGCCTTGCGATCGCCTATATATAGGCAATCAGAAGAAT 28905 37 100.0 34 ..................................... TTAATTCTGAAATAGTTCTACAAGTCATGTCCAA 28834 37 100.0 34 ..................................... TTATCAACTATTTTCTATTATCAGTAATCAAATA 28763 37 100.0 38 ..................................... AATATCCGTAAATTCTGCAAGTTTCTGTGTGTATAGCT 28688 37 100.0 34 ..................................... TTATCAACTATTTTCTATTATCAGTAATCAAATA 28617 37 100.0 32 ..................................... TTGAAAGAAATTCTTTTAATTGAATTTAAATT 28548 37 100.0 34 ..................................... ATCAGATATTCATTTATCTCCAGAAGAAATTATT 28477 37 100.0 37 ..................................... ATGTTAATGGTACAGTTTTTAGCGTAAATGAAGAGCA 28403 37 100.0 37 ..................................... TTGTCTGATACCCGAGTTTGTAAAATTCCCTCGTAAA 28329 37 100.0 38 ..................................... GAATTTGTTGACTATCTGCTAGAACCTATATCTGGTAA 28254 37 100.0 34 ..................................... GGGCAGATGCTTGCTTATCTGTTTTAAATGCAAA 28183 37 100.0 36 ..................................... ACCGGTGGGTGCTCCTCCTTGTCTGCCATCCACAAA 28110 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 42 37 100.0 36 GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Left flank : AAGGCTTCTAAATTGAGC # Right flank : TATAAACCTAAACATTTGTATTGCAAATACTGCTAGAAAAGACAATAACGGCGTTGGTAATTATTTTGATGAAGTATATTTAACGTTACAATGAAACAGCAGGTGCGATCGCACCTTCCCACCAGAGCCATAAACGGAGTTGCTGAGGGGTGAAAGATGGCAGCCAAAAGCCAAATCCTCATGACAAGCCAGAGTTTGAGAGCCTTTCACCCAGTTGAGTAGAAGGATAAGAACTGCGATCGGGGTGCTTATCAGGGAACAGAGAGTTAGGCGATCGCTTTGGATAACTGCGAGCGCCGCAGTATTCATAGCTTGTGTTAAAACTATACCAAGGGAGCTATCTTGGCGTAAAAATCTTCATCGGCACTCCTGAAAGCAGGACGTTGCATTAAATTGTTTAAGTACTTACTCAAGGAGTCACTATCTGATAACATCCATAGCTTCTTTACCCATAGCAAAACCCCTCCAGTCACAATATCAGCAGTCGTGAATCGATTTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA //