Array 1 1786721-1788193 **** Predicted by CRISPRDetect 2.4 *** >NC_009708.1 Yersinia pseudotuberculosis IP 31758, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1786721 28 100.0 32 ............................ AGATACAGGCGAAACCATATTTTATATGAACC 1786781 28 100.0 32 ............................ GCTATCGACGCCGACAAATCCGTCAGCAGAGA 1786841 28 100.0 33 ............................ TTTACGATACAATTAATCTCGGTCAATGTCTTG 1786902 28 100.0 32 ............................ TCGTTCACCTGAGCGCTTGACTTCAATATTAG 1786962 28 100.0 32 ............................ GATGTCCATTACGAACCTCGGCAGTAATGTAT 1787022 28 100.0 32 ............................ TATGAGAGGTAGCCTTTAGTAGCGCAATGCTT 1787082 28 100.0 32 ............................ ATATGGATCAAAGTCAGGCAGCTCCACCTCGA 1787142 28 100.0 32 ............................ GCTGAATCTACGCCATCACTCGCTTTCTGAAT 1787202 28 100.0 32 ............................ AGAACAATAAGAGAAAGCGGAGTAAAGGCGGT 1787262 28 100.0 32 ............................ AATCTGGCGGCGCATTATCTGGTTTTATGTAT 1787322 28 100.0 33 ............................ ACAATCAGCTATTAAAGAAGAAGAAGCATTTAA 1787383 28 100.0 33 ............................ ATGTTCGACGATTCATTTTATCTGTATTTCAGT 1787444 28 100.0 33 ............................ ACTAATAGTTGGCCAGCTGTAGGCTCGTCTGCA 1787505 28 100.0 32 ............................ CGGATAAAGGTCCATCAATGACAAGCTGAAAT 1787565 28 100.0 32 ............................ AGAATTTACAGCCGTTATTTAGCATTGCTGCC 1787625 28 100.0 32 ............................ ATTTACCCGTTCAAATTTAGGAATATAGAGAA 1787685 28 100.0 32 ............................ ATCATTATCGATAAATGCGCGACGCATACGAG 1787745 28 100.0 32 ............................ AAAAAATCTGGGATATTAAACGCTGTTGCACA 1787805 28 100.0 32 ............................ TGGAGCGTAAAACCTCGTTAACCCCTTCTATT 1787865 28 100.0 32 ............................ GGACAGTGTCATGAATTTGGCCCGTGCCGCGT 1787925 28 100.0 32 ............................ TCCATGACACCGGCACGCGTCAACACCGAAAT 1787985 28 100.0 32 ............................ AGAACCATTTCAGCCGCTTGCTTACCACTCAT 1788045 28 100.0 32 ............................ GCAATCCGATGAATTCAATCTACCTGCTATCT 1788105 28 100.0 33 ............................ TCCTAGGCGCTTACCCATTCCATAGCGATCGTT 1788166 27 85.7 0 ...................-A.A.C... | T [1788190] ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCACCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTAGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2728339-2726751 **** Predicted by CRISPRDetect 2.4 *** >NC_009708.1 Yersinia pseudotuberculosis IP 31758, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2728338 28 100.0 32 ............................ TAGCGGAATGAAAGGTAATTTACTGACCATCT 2728278 28 100.0 32 ............................ ACTGACTTAGCCAGCCGCGCCATCTCGTCATC 2728218 28 100.0 32 ............................ TTTCCCGGCATTTTGTCGGGTACTGTTGTTGA 2728158 28 100.0 32 ............................ ATCGGTAAAGATGCCTTTAAAGGGCTACTGGT 2728098 28 100.0 32 ............................ TAACGTCCAAGCCTTCCTCCAGTCCGTACAGT 2728038 28 100.0 32 ............................ GGTTGGAATCAATGTCATATCCGTCATGCTAT 2727978 28 100.0 32 ............................ AGAAAATAGCGGATGTGGCATCAGGAGGATAT 2727918 28 100.0 32 ............................ AATTGAAATAATGGTTAGTGGTAACGGGCAAG 2727858 28 100.0 32 ............................ GTCAACCTTCGGATGATTATACGGTGCTTTTT 2727798 28 100.0 32 ............................ CCCAGCCGGATTTCCGCTTGCGTTCGTTGTTA 2727738 28 100.0 32 ............................ TGTGATTTAGCGGCGGCCTGTGTGCGCCTGTA 2727678 28 100.0 32 ............................ TAACACAGTAACTTCCGAGGCCGATGATGGTA 2727618 28 100.0 32 ............................ CGATATGACGCAGGCGGTCAATCAGGCCATCT 2727558 28 100.0 32 ............................ TATACCGAGAAGCATTACAACGAAAACACCGA 2727498 28 100.0 32 ............................ TGAGTAGCATTCCTGCTGATGGTCTCACCAAT 2727438 28 100.0 32 ............................ ATTGATATCAATCAATCCATCTATCACGCCAG 2727378 28 100.0 32 ............................ TTGCGGAGTTCAATCACGTAAACCTGATTGTT 2727318 28 100.0 32 ............................ ATTCCAATCATCAGTAACGTGTGTTCTTTCCA 2727258 28 100.0 32 ............................ TGATAGGGTACATGTGTTCTTAAATTTCTAGC 2727198 28 100.0 32 ............................ ATCTTCTACCTCGGCTTTTAATTCCTGGACTT 2727138 28 100.0 32 ............................ GACACGTTGGATGAAGCACAACAATTAATTAT 2727078 28 100.0 32 ............................ TGTAAATTCATAAGATCTTTTAAATAACTCAA 2727018 28 100.0 32 ............................ TTAAAATTGTTGATGGCATAGCGATACTTTTC 2726958 28 100.0 32 ............................ TCGAATATCTGGGTGGTCTTGGCCAGCACTTC 2726898 28 100.0 32 ............................ AAGCACAGCCGCAGTGCTTGCAATGTCCACGG 2726838 28 100.0 32 ............................ TTACACGCTGGACGGCCAGGGAGACGAGAGCT 2726778 27 89.3 0 .....................CC.-... | T [2726753] ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATTGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCGCTGTCGTTCAAGGTATTTGGGTAGTTACGGGCACGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGTGGGTTTTGCCGCAGCAGTTGTAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //