Array 1 91-614 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFC01000012.1 Flavobacterium psychrophilum isolate 33-SE474_S14_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 91 42 100.0 27 .......................................... GCTATTGGAAGGTATGCTTTTTTCAGT 160 42 100.0 27 .......................................... ACTATTGGAGATGAGGCTTTTGCAGAT 229 42 100.0 27 .......................................... GATATTGAAAATAGTGCTTTTTTCAGT 298 42 100.0 27 .......................................... ACTATTGGAGATGGGTCTTTTGCAGAG 367 42 97.6 27 ........................................T. ACTATTAATCGAGGTGCTTTTGCACTC 436 42 100.0 26 .......................................... ACTATTAGAAGGGTGTTTTTGCAGCT 504 42 100.0 27 .......................................... GATATTGAAAATGGTGCTTTTTTCAGT 573 42 100.0 0 .......................................... | ========== ====== ====== ====== ========================================== =========================== ================== 8 42 99.7 27 TGTTCTGGTTTAACATCAGTTACAATTCCTAATTCTGTGACT # Left flank : TTTACTGGAGCAGCAGAAATACCAGAAACAGTAGCTTATAATTCGGAAAACTACGCCGTGACTGCTATTGGAGAATCTGCTTTTGCAGATT # Right flank : ACTATTGGAGAGGATGCTTTTGCAGGCTGTAGAAGTTTAAAGACAGTAAATTGCCATATTACAAGCCCTTTAGTTATTAATGCAAATGTCTTCGGCAATATTACTCAATCAAACTGTGCTTTAAATGTTCCTACTGGTACGCAAGTCGCTTATCAGGCAGCCGCGGTTTGGAGAAATTTCAGCCCTATTTCTGGTGGTTTACTTTCTAATCATTCATTTGCAATAGAAAGTGCTTTAAAAATATACCCAAACCCAGTTTCAGAAATTTTAAACATAGCCTTGCAAGAGGGCTTACAATTAGAAAAAGTGAATTTTTACAACACATTAGGGCAGTTAATAAAAACAACTAATCATTTAGAAATAAATGTTTCAAGCTTTGCAA # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.13, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTCTGGTTTAACATCAGTTACAATTCCTAATTCTGTGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 11296-8290 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFC01000093.1 Flavobacterium psychrophilum isolate 33-SE474_S14_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 11295 46 89.1 30 TGC.G...G..................................... AACCAAGTTCACAAGTACAAGACAAATTAT CT,T [11282,11288] 11216 46 100.0 30 .............................................. AAAACAGAAGTGCAAATTAGCAAGGAAGTA 11140 46 100.0 30 .............................................. TGGTTTGTTCCTTCGGATTTATGAGATGGT 11064 46 100.0 30 .............................................. TAAAGAAGGTACTAACGTACCTGTGGGTTT 10988 46 100.0 30 .............................................. ATATATTTGTACCATAAACAAACAAACTCA 10912 46 100.0 30 .............................................. AAAATAAACCAAGCGTGTCAGACGATTTAG 10836 46 100.0 30 .............................................. ATTGAATTAAAAATGCTTCAAGACACCGCT 10760 46 100.0 30 .............................................. CCAAATGAATAACCAAACAACGTTGAACCT 10684 46 100.0 30 .............................................. CTCACGCCTGAAGTTCTCATAGGCATTAAT 10608 46 100.0 30 .............................................. TTACGAGCCAATTAACAGTAAAAAATACTA 10532 46 100.0 29 .............................................. CCTCATTCCTGCTTCATCTGGATCCATAC 10457 46 100.0 29 .............................................. AATATTCAACTAACGAATGTTTCTTCGTC 10382 46 100.0 30 .............................................. ATTTGAATTATTATTTCAATCTGAAAGAGT 10306 46 100.0 29 .............................................. AATTTTCTAGTTCCGTTAATGCCTCTTTC 10231 46 100.0 30 .............................................. ATAGTTTAAAAAAAATATTTGCAAAACCAA 10155 46 100.0 30 .............................................. GAAGCGGTGGTTATTCCAGAAGTAAAGCCT 10079 46 100.0 30 .............................................. ATGGAGAGAATTACAAACCACACAAACCAA 10003 46 100.0 30 .............................................. CAACGCCAGCAAGCACAACACCAGCACCAC 9927 46 100.0 29 .............................................. ACGTTCAGAATTTCACAACAGAATTGTTG 9852 46 100.0 30 .............................................. TGACAACGGGATAGAAGCAAATGTTTCTAA 9776 46 100.0 30 .............................................. GAACTTCTAAAAAAAGAAACAGAGTACATC 9700 46 100.0 30 .............................................. TCATTAACCGACACCGTTATATTTCCGCCA 9624 46 100.0 30 .............................................. TGTATGCTAAATACCAATCTGAGGGTTACA 9548 46 100.0 30 .............................................. TAGAGGCTAATGCGTGGCATGGTGCTACAG 9472 46 100.0 30 .............................................. TGACTGGGCAAAAGTAGCCGTAATAGACAC 9396 46 100.0 30 .............................................. TGATTTTCTTGAATATAGTATTTAGCACGT 9320 46 100.0 31 .............................................. GGAACCATATTTGTTATTAAATATGTATCAT 9243 46 100.0 30 .............................................. GCTAATATGTGGCTCCTTAATGGCACACGA 9167 46 100.0 30 .............................................. GCAAACCGAGTTAGAAATCGATTCGATGGT 9091 46 100.0 29 .............................................. TTTCATATGAATTGGGGCTGGTCAGGTAG 9016 46 100.0 29 .............................................. TTATTGTCACGCTTCACGTCTAATGTTTC 8941 46 100.0 30 .............................................. CTTCAAAAAAGATTGTACGAAGTACTATTG 8865 46 100.0 29 .............................................. CAAAATGGAATATAGCGTAGCCGAAATCA 8790 46 100.0 30 .............................................. ATTTATGCGTGAAATTAGATTGCCTGTTTT 8714 46 100.0 29 .............................................. ATAAACAAACTTACGATAACAATGGCTAT 8639 46 100.0 30 .............................................. TCAGTTGCTTCAATTGAATTGCCCAGCATT 8563 46 100.0 30 .............................................. CCATTGTCTTGTATCTCCTTATCATATTGC 8487 46 100.0 30 .............................................. AGGAGTCGATTTTATTGTTTTTGTGCCCAC 8411 46 100.0 30 .............................................. TCTTATCTACCTTTCTCGAGTCTAATTCTG 8335 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 40 46 99.7 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : GGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACT # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATCACACCAATTTTGCCATGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //