Array 1 59092-61687 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCO01000070.1 Prevotella copri strain iAP1319 NODE_13_length_75975_cov_26.7201_ID_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 59092 30 100.0 35 .............................. CCGTTTAATGAGCATGATACCCACGTTGTTTGTGT 59157 30 100.0 35 .............................. AGAAGTGACAAACTTTATAAAAAGTGAATATAAAA 59222 30 100.0 34 .............................. TTATAACTTTAATTACGTAGCCTAATGAAAAAAC 59286 30 100.0 36 .............................. TTGTTGATGATTTAGTTGCTGATTTCCGATATCTGT 59352 30 100.0 37 .............................. TTATAACGAAGAGATGGCAGATATGCATCTTTGTCTC 59419 30 100.0 35 .............................. GTAAGAAACTCAATTTCAATTGGAACGGCAAAACA 59484 30 100.0 38 .............................. TGAATGGCCGTCACCCCTTCTTGGAAATAGAACGAAAT 59552 30 100.0 39 .............................. CCCACCGCCCCCTTGAGTCTCTGATGTCCCTTTGCTAGA 59621 30 100.0 34 .............................. GTCTATCGTCGCCATTGAACGTGCAAAGGCAACT 59685 30 100.0 36 .............................. ATGCTTGAAGGTTACTAAGGCTCGGTTGCGCCCATG 59751 30 100.0 39 .............................. TAGGGTGGGACCCACGGCTGCTGCGCAGCCCCCACCCTA 59820 30 100.0 38 .............................. ATGTTGTTTCTACTCTCCGCGAATCTCTCTCTGCTACA 59888 30 100.0 34 .............................. GAGACAAAAGGTCAACATTTCCATTGTAAGAAGC 59952 30 100.0 39 .............................. GCTTTTTGTGCACCAGCTTGTACACTAGTTTTTACTTTA 60021 30 100.0 36 .............................. AGGCTCTGGAGGGCGAACTGGGCTGCAAGCTACTGA 60087 30 100.0 37 .............................. GATAGAGAAGCAGATAGAATACTATAAAGATGTGATA 60154 30 100.0 34 .............................. AGAGCTATTCCTGCGTGGATATGCAGTATAAGGA 60218 30 100.0 36 .............................. GAAAAAGGATTTTGAGTCAAAGTACAGCGAGGATGA 60284 30 100.0 34 .............................. GGCTTATTTGTCGCCTAGCGGAATTTAACCCCCT 60348 30 100.0 38 .............................. AAGAATGATGCAAGTAAAACTCAGGCAAAGCTGAGAGT 60416 30 100.0 37 .............................. TAGTAAAATATGGATATGAATATAAAGGCATATCCCG 60483 30 100.0 34 .............................. AGGCACGCCGCAAGCAGTATATCCTCGGCATCAT 60547 30 100.0 34 .............................. GTTATGATGAAGAGGATTTCGCTACTGATGGCGC 60611 30 100.0 34 .............................. AAAAGAACGCAGTTATAAATCTCGCTATTGAATA 60675 30 100.0 35 .............................. TTCAGTACCGCTACGCATGGCGGAACTACGCTCCG 60740 30 100.0 36 .............................. AAGTGTTCCTTGATTTTTTTCCAGAGTGCGCAGTTG 60806 30 100.0 37 .............................. GCGGTTATCTCTGCCTTGGCAGTAATGAGGAGTTGCA 60873 30 96.7 34 .............T................ TAGAATTATGGCAGTAAATCAAAAAGCAATCGGG 60937 30 100.0 35 .............................. GCGCATGCTCATGACCACCGTGGGCGCAGCATACA 61002 30 100.0 36 .............................. AGTGGAAGAACTATCTCACCAAGAAGGAGGCATCTG 61068 30 100.0 35 .............................. GAGAAGGGATTGATAAATTCACAGGAGAATGCTAT 61133 30 100.0 37 .............................. TTTCAGCCATCATTGATGAAGAGGTGAAAGCTGTAGA 61200 30 100.0 34 .............................. CAATTTTCAGCACCTCGTGTGACAATCACGAACC 61264 30 100.0 34 .............................. ATTTGGTCTAGCATATCATATACAATAGTAATAA 61328 30 96.7 34 ............................T. TTTTTTCTAGGTTTTAAAAAGAAAAAGGCTGGAA 61392 30 100.0 37 .............................. AGTACAACATCAAGGATGAGTGCATCAATCCGCACGT 61459 30 100.0 35 .............................. ATCATCTTTGCGCCTTCGATTGGTATCTCTTGATC 61524 30 100.0 36 .............................. GAAATATAGAGAGAAAAGCGGGCGTGCGTATATCGC 61590 30 100.0 39 .............................. ATAGACAATATGTATTGAGTTAATTCCGAACAAAGTTCT 61659 29 80.0 0 AA..T...C................-..T. | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 99.3 36 GTTCAAATTGTACCTTTATGGAATTGAAAT # Left flank : CCTTTTAAAATGTATTGGTGATATGTATGTGATTATAGTTTATGATGTTGGTGAGAAGCGAGTAGGCAAAATGTTGAAGCTTTGCCGCCAATATTTGTGTTGGATTCAGAACTCAGTTTTGGAGGGAGAATTATCTGAAGCTAAACTTCGGGAATTGCAAATGAAGATGAAAGCTATCATTGATGAATCCGAGGATAGTGTCATTGTTTTCACCAATAAAATGGGGTATAATATGAACAAACAGATTCTTGGAAAAGAAAGAATGTCTACCGATAATTTCTTATAAAGAGTTGTCGATGTGGTTCTAATTTTCCGTTTCTAGGTTCGGAAAAACCTCCGAAAGTGTTCTTTGACTTATTGAAACCTCCATAAATAGGCAGGTTGTCGTAAGGCCGCAGAAAAAATATCTTTAGGCATCGACATTTTTTCTGAAGATTTTTTGTATCTTTGCACCCGCAAACCTATTGATTCTTCGAGCATCTATGTCTAAGGATTAACGG # Right flank : TCAGAAGTACTGATAGCTTTAGTATTATACCGCAATCTCTAGTTATAAGTGTTCAGAATGTGTCTCCTCCTGCCACAGCATTCGACTCCTTCAGCTATCGCATTCGACTCCTTCAGCTAATGCATTCGACTCCTTCAGCTAATGCAGCCGTCTCCTTCTGCCAACTCAGCCGTCTCCTTCACCTAATGCAGTCGACTCATTCAGCTAACTCAGTCGTCTCCTTCAGCCACCGCATTCGACTCCTCCAGCTATCGCATTCGTCTCCTCCGCTCACCGCATTCGTCTCCTTCAGCCACTGCATTCGACTCCTTCAGCTAATGCAGCCGTCTCCTTCAGCCAACTCAGCCGTCTCCTTCAGCCACCGCAGCCGTATGTGTCAACTCAATGAAGTAGATGAACTCGTGAAATGAAGTGGATGAACTCGTGAAATGAAGTGGATGAGTTCGCATAATGAAGTTCATGATTTCTGCATAATAATTAATACATGCGAATGGTAAAGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTGTACCTTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 1253-1021 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCO01000019.1 Prevotella copri strain iAP1319 NODE_19_length_65046_cov_24.0392_ID_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1252 36 100.0 28 .................................... GACTTGGTATCGCAGGTTTGGCTACCAG 1188 36 100.0 30 .................................... CTCTGACGTATCTTATTCTTATACGCGTCA 1122 36 100.0 29 .................................... GATAATTTGCCATATTGATTTGATTTTGA 1057 36 86.1 0 ............G.C.........AC...A...... | T [1037] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 29 GATGAACATGCATTATGAATAGTGGGTAAGTACAAC # Left flank : GAAACTATCTGTGTGGAAAATCTTTCAATCAAGGATGGTATGTTGCAGGACAAGAAACATGGTAAGCATAATAAGCAAAAACGTTCTCGCAATAAGCTTATAGTTGATGCAGCTATGGGCATGTTGCGTATCAAGCTGCAGCAGAAATGTAAGTCGAAAGGAATCAACTTCATCAAAATTGAACGTTATTTTCCTTCTTCGAAGACTTGCCACTGTTGTGGAAAAATATTTAAAGGTTTACAGTTAAGTCAGCGTTCATGGGTGTGTCCTTCATGTCGTGCAAAGTTGGATAGGGATGTGAATGCTGCTATTAATATTAAAAATTTTGGAATTAGCAATAGTTCCCTAGGGAGGTGTACCCCCGAAGTAAAGTCTGTGGAGCATCGTAAGCAGAAACGAAGAAATGCCAAAAGCAGTGACGTTTCAGATGTAGAGAAGCAGAAATAAGAGAGCTCTAACATTGAGCAAATGCCTGTTATACAGAATAATATTTATCTGAG # Right flank : ATGCAGTCGCTATCCATTCGGCTGACGTCTGATGGCTTTACTTTCAGAATTTTTCATTAGGCAAAATGTATATTACGTATTTGTTCTTCTCTACATATCTTGTATATCCTCTAAGATTCAGAATATGCAGATGGAATTAGTAAAAAAATAATTGATAGTTAATTATGGATAAGACAATAAATACAACGCTCATCATAGGAAATGGGTTTGATTTAAGTATGGGTAAACATACCAGTTATAAGGAATTTTATGAGAAGCTGGTAAAGAATAAAGGTTTTTGGGATACCTCAAATCCGCAACCTATAGGGTTTCGTGGGAATTTACTTGTAAAACGACAAAAATTCTTTTATTGTACATATTCCTTGGGCATAACAGAAACGTCGTAAACACAAAATTCCCTTACCCCATAAAGCGACTTGAGGTAATACGCCGGTTTAACCAGAAAAGCATGGCCTTTAACCAAAGTCTGTCTTGAACAGGTTAGCATAAGCATTGTTGTC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAACATGCATTATGAATAGTGGGTAAGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //