Array 1 26971-27509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTSU010000018.1 Francisella philomiragia strain F1079 philomiragia_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================== ================== 26971 33 100.0 39 ................................. GTAATGAGGAGGCTATGAATGGTATTAGGGCAGCTGTTT 27043 33 100.0 39 ................................. ATATTTGATTATGGCCAACGAATTTGCGGAACGGTGTTT 27115 33 100.0 40 ................................. AATTCCTGCACTAAAAAATAAAAAATATAGTTTGAAGTTT 27188 33 100.0 39 ................................. TTCAAAACTTCTGATACTAAAAATTCTTGATAAATGTTT 27260 33 100.0 40 ................................. TAAGTATAGTTGGCTTAACAAGCTTCCATTCATCAAGTTT 27333 33 100.0 40 ................................. TTGGTTCGATCTTTAAAACTCTTGCTAGTTCAGCTTGTTT 27406 33 100.0 38 ................................. GCTAGATGGTTTATGGGTGCATCAAAGCCAAGTAGTTT 27477 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================== ================== 8 33 100.0 39 CAGTAGCTAGAATATTTGGTATACTACTGTTGG # Left flank : TTGGGCCAATCATAGTAAAAATGCTGAGTTTATATCTGAGCTAATAAACTATATCTATAGCAATAGCGACTATACGAGTATTATAAATAATGATCTTGCTTTGGTTGGTTTCTCTGCTGGAGGATTAGCTACTTTGATAGCGACATCAGAGAATACTAGGGTCAAGCTTTGGATAGGATTAGACCCTGTAGATGTAGGCAATCTTGGCTCTCAAGCCGCCAAGAATATAAATTGCCCAACCTATATAATAGCTGCCTCAGCAAGCGCATGTAATGCCAATAACAACTACAAAAACTTCATAACAAATCTAAAAGAAAACAATCTTATCAAAATTGATGGAGCTGTACATGTCGATGCTGAATGGCCAACTAATAGATTCGCTGAGTTGTTCTGTGGTAGATCCACACAGCAAAAAAGAGAAAGATTTCATGATGATGTGTTGACGATTTTGGATAAGAGTTTTAAAAATGAAAGCTATATACAAAATATAAAATGAGTTT # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGTAGCTAGAATATTTGGTATACTACTGTTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 20-2154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTSU010000003.1 Francisella philomiragia strain F1079 philomiragia_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 20 37 100.0 34 ..................................... GCTAGATGGTTTATGGGTGCATCAAAGCCAAGTA 91 37 100.0 36 ..................................... TTGGTTCGATCTTTAAAACTCTTGCTAGTTCAGCTT 164 37 100.0 34 ..................................... GCTAGATGGTTTATGGGTGCATCAAAGCCAAGTA 235 37 100.0 35 ..................................... GTGATAGCACTGTTTTAAGCACCAAAGAAAGATAT 307 37 100.0 36 ..................................... ATTAGTACTTGATGATGTTATTGTCGGTTTCATGGA 380 37 100.0 34 ..................................... TTTTAAATATGTATTTTCCCTGTGGAAAAATATT 451 37 100.0 37 ..................................... TAGTAAGTACCTTTTTGTTAGGTTTCCATTCAATGGA 525 37 100.0 36 ..................................... AGATGATGTGGTAGGGGATGTTAAAAGAATGATTCT 598 37 100.0 36 ..................................... TAAAGATGTGGGTTTCTGCGAGCTAGATCCTTTTGT 671 37 100.0 37 ..................................... GGTAAGCATTTTGAGTGTTAGTTTGTGTTGCTGATTG 745 37 100.0 35 ..................................... ATTTATGAGGGTGATATTGTTATTAGAGACCTCGA 817 37 100.0 35 ..................................... GATTATGATTTGTATTACAAGTTTCAAAGCGTTCC 889 37 100.0 37 ..................................... AACACATTATTGCTTTTGTACCCTCTTCGATATGATT 963 37 100.0 35 ..................................... CTTATATTGACTGGCAATGCTCAATTTAACTTTGA 1035 37 100.0 34 ..................................... CCATGACGGCAATGCTTGGGTTTCCGGCAATGCT 1106 37 100.0 36 ..................................... TTTAGAATCTCGACAAAAAGGCGGCGGTACTATTGT 1179 37 100.0 34 ..................................... CTTTCACTGGCACAGCTCAATCTGCTATTGCTGT 1250 37 100.0 35 ..................................... CCAGTAGCAACGACACCGCTAGCATGATCTTCTAA 1322 37 100.0 35 ..................................... ATTTATGAGGGTGATATTGTTATTAGAGACCTCGA 1394 37 100.0 35 ..................................... GATTATGATTTGTATTACAAGTTTCAAAGCGTTCC 1466 37 100.0 36 ..................................... AGAAAATGTACATAAAGAAGTAACTTGCAAATATTT 1539 37 100.0 36 ..................................... CAATAGCAGTTTAGCCGTTGGCACATGGATAAATAA 1612 37 100.0 34 ..................................... AAAGAAAGACAAATGATTAATATTGGTAAGTTGG 1683 37 100.0 37 ..................................... GTTTAGTTTCTACAGCTAATAATGTAACATCGCTTGG 1757 37 100.0 34 ..................................... AGAACATTGCCAGTTTAAGATAACGCTGATAGAA 1828 37 100.0 35 ..................................... CGAGATGGCTTAGTTTTCTTAATCATGGGCTTTAC 1900 37 100.0 36 ..................................... CAAAAGAGCAATGATTGCATGGTTCCTAAATTTTTT 1973 37 100.0 35 ..................................... CAAATTGAGGATCAACTTCAACTAACATATGTATA 2045 37 100.0 36 ..................................... AATTTTACTCGCAATTAGGGTTATATTTTTTTAGGT 2118 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 30 37 100.0 35 GTTTCAGTAGCTAGAATATTTGGTATACTACTGTTGG # Left flank : ACTCTTGCTAGTTCAGCTTG # Right flank : GAGCCAAAATAAACCTAGAGTTTATAAGGCTTTGCGAGAATAATTTATTGGTGTTTTTTCGCAAACACCCTACTTGTCAAAAAAAGTAGACATTTTGCGAAAAAGTATCTAAAATAGATTTTGTACCAAATATTTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGATTGATATAAAACAAAAAATTGCCATTTAAATGGCTTTTTTTGTTTGTGTAAATATGGATTTGATAGATACCCAATCAAGTTGGGTATTACGAATGGTATTTGTATAATGCTTATCGAAATTCCTACTAAATGGCGATCTAAGAAAATCAAGCTGAGTATTGCAAATTAACTCTATACTTTACAGGAACTTGATAGGGTTGATGACCTTTTGCTCTTAGCGATCATTGCAAAAGTTAAGATACTCACATTGTATACATTGATGACCTGTTGCTGATGAATCAGGCTTATTGCCATTATCAAGAGCATTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTAGCTAGAATATTTGGTATACTACTGTTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //