Array 1 20983-20622 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYL01000035.1 Fretibacterium sp. OH1220_COT-178 scaffold_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 20982 30 100.0 37 .............................. CTTGTGATGACCACCAATGCACGGGAGCTCCGGCACA 20915 30 100.0 36 .............................. GCAGCGCACCGTATGTTTTTCCGCTCCCTGCCGGGC 20849 30 100.0 37 .............................. TCGAGACGTGGAAGGAAGAACGCCGCCGCAGGAAGGA 20782 30 100.0 37 .............................. ATGTCAGCCCGCGCCGTCGCGAGGATTCGCCCCGCAT 20715 30 100.0 35 .............................. CCATAACATTGGAACTGGGCCGCTATTGTTGCCAG 20650 29 76.7 0 ....G.C........AT-....G.....G. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.1 37 CTCAATATTCCTGATTGCAGGGATGGAAAC # Left flank : CCTCTACAATAATACTTGGAAAATTCAACCGGGAGGAGGGAGTACGGATGTCGATCATCTTGAACCTGCCGCCCGAGCTGGAGAGTCGGTTGGATGCCCTGGCGCGGGATGCGGACAAGACGCGGGAGGACTACTTGGTGGACGCGCTCGAACGGTATCTGGAGGAGCTGGAGAACTACAACGATGCCGCCCGTACCTCCGGGCTGACCAAGGGAGACCGAATGGGCACGTTTGCCGCGGATGCGATCCGGAGCGACCTGGAGCTGGAGGACCGATAGGCCCTTTCCGAAAGTTTTGAGGCACGACCTTGCATCCTGAGGTCCGCGTCGACCCCCGACGGCGTTTGCAGTGCCGGTGGTCGACGCGGCGCCTTCTTTGCCTCCAAAATTTGCCTCCAAAATGCGGAGCCACAGGGTTTTACGGAGGAGACGAACATTTTCCGTTCCGCCGCCGATCAGCGGATTGGAATTTGCCGATCCGGTTGCTGCCTGCCTCGATCG # Right flank : ACCGCCTGTCGGAGGGAGGCTCTGCCCTGCAGCCTGGTCCGTTCCTTCCGGCCTGGATCCGTACGGCCCCCCTCTTGCCCGCCGCCGAAACTTATGCCGCGGGCTCCTCCTCGGCCAGGCCGGCCCTGCGGACCTAGAGGAGAACGCCGCATGGTGCACGTGCATGGCGCACCCGAATCAAATCGGGCCGGCGCCCTTTTCGATGTTTTGGGGATAACCTCACGGGAAATTCGTTTTCGCTAACGCCTGCGTCCGAGGCCGTCGAACGGGCTGTCCGGGCTGTGTGCGTCCCTTCCGATGATGCGGATGGCGAACCGGAACTCCTGCAATTCCCTGCTCAGCGTGGCGTCCTTGGGGGCGTACAGCTGACGGAGCCCGCAGAGGCGGACGAAGTCGTCCAGACGTCGGTTGCTCTTGTCCTTGAGTTTGCGCAGGTTGTCGTAGGATACCCGATCGCTCTCACCGTTTTTCAGGTGCTGCAGATGGGCCCAATTGGGTCC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAATATTCCTGATTGCAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1-3645 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYL01000054.1 Fretibacterium sp. OH1220_COT-178 scaffold_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================ ================== 1 30 100.0 36 .............................. ATTTAATCTGTTTCGATTTGCTTGTTTCGTCCCTTT 67 30 100.0 38 .............................. GCGTTTACGAACAGGAGCCAGGGCTGAGCCACGGCCCG 135 30 100.0 36 .............................. TTGCATTTGCAACAGAATTGTGGAAAACCGGTTATA 201 30 100.0 37 .............................. GCAATAAACGCAGCAATACCAAGCGTTTACAGCTAAG 268 30 100.0 37 .............................. TCGCCCCAGTACAGGGCGATGAAAATCTCCTCCCACG 335 30 100.0 39 .............................. GTCGAAAGCAAGCAAAAGGCTTTCATTGACAGTCTGATG 404 30 100.0 36 .............................. TTTCCGCCACCTCCCGCTGTGAAAAGTTGTGCGCTT 470 30 100.0 38 .............................. AGGCACCGTTCCGGTGCATGGCGACACCGTTTCCATGC 538 30 100.0 38 .............................. ACGACGACCTGGGAGCCTTCACGAGGATCCCGCAGCTT 606 30 100.0 36 .............................. ACGGGAAATTTACGTCGACGAGATATTGACCGATGG 672 30 100.0 64 .............................. AGAAACCTTCCTTTGAGGGATGGAAACAATTTTGAACACTATCCCCGTACGGAACGGTGGTGAG 766 30 100.0 35 .............................. AGGTCGGTTTTATAGACATAGGCCCCGGTAGCGAA 831 30 100.0 36 .............................. TTAGAAAAAATTTCCGGGAAGGGCTCAGGGTTTCGA 897 30 100.0 36 .............................. CATTTATACAGTAATGAGTTGCAAGGTGGATTTATC 963 30 100.0 37 .............................. GAAGATTTTCCAGCCAACGCCGACAAATCCCTCCAAA 1030 30 100.0 36 .............................. TGATGGGATTCTCCGAGGCAAACGCCCAGAATCCGT 1096 30 100.0 39 .............................. TGATTACCTCCTCGTTTCTCTTGCCACAAGCGTTTACAG 1165 30 100.0 35 .............................. CAATTCGTAAAAGAAGAGTACGAGGACCGCGCTAA 1230 30 100.0 37 .............................. CTCAAATGGACGACTGGCCAATCCGCCCGAAAAATCG 1297 30 100.0 35 .............................. GCGGCTCCGCGGGAGCCTGTCTCCTCGTCGTCTCG 1362 30 100.0 37 .............................. ACTCCGCATGTCGGTGCGAGAAGCGGAACGTCGTGGC 1429 30 100.0 37 .............................. AGCTGTGCCATCAAGACCGCCTGATCCGCAGCAGCGC 1496 30 100.0 37 .............................. TCGTCGCCCCAATATAGGGCAGCGATAACGTCCTCCC 1563 30 100.0 37 .............................. CCGTTTGCGGTGGCTAAGTACGACAGCCCGTCCCAGC 1630 30 100.0 37 .............................. CGGTCCGCCAGGTCCTCGGGATCGACGGACAGGTTTC 1697 30 100.0 36 .............................. CATGCGCACGGTCTGCCAATTCTTGTCATGTCGACT 1763 30 100.0 37 .............................. TCGGCCCGTTCGTGGCCTGATCCTTCAAGATAATCCC 1830 30 100.0 35 .............................. CCGATGCTCTCCAGGGGCACGCCGAACATCTGCGA 1895 30 100.0 36 .............................. GGCAATCGGACGTAAAGCTGAGACACGTTCTTCCCC 1961 30 100.0 36 .............................. GTCCAACGGCATCCGTCAATACGACTGGTGGAACGG 2027 30 100.0 38 .............................. CGTTCTCGTCCGCCACGATCCCCAGCCTGGGGCCGGGA 2095 30 100.0 35 .............................. AGCGTAATATTTTGGCTTTTTACAGTCCGTATCCA 2160 30 100.0 36 .............................. TCGGCTCGCCGTACCCGAAGCCGGCGGCCGAGATCT 2226 30 100.0 36 .............................. GGCGGTCGAACGCCAGCTTGCTCTTGGAGTTTCCAC 2292 30 100.0 37 .............................. AGCTCATGAAGGGCACCGAGCCTTTGCTTTTGACCGA 2359 30 100.0 37 .............................. TCGTGAAGTTCCCGGAGTGGTACGGGCGGGGCAAGAC 2426 30 100.0 36 .............................. CGAAAATCTGGGTCCTCATGTACCGCTTCCGCCACA 2492 30 100.0 36 .............................. ATACTCCAATGTGCCAGGCCCAAAAGCGCCTGCCAT 2558 30 100.0 36 .............................. CACCAACCGCGCAGCCTCCAAAGTATACAGGAGGAT 2624 30 100.0 35 .............................. GAGGTTTTCGTAAGTCTAGCAGGCGTCCGGCAATC 2689 30 100.0 35 .............................. GGAAGTTATCAAGACTTTATGGCTGTACTACCGAC 2754 30 100.0 36 .............................. CCCCGATGAGGCTCCCGTCGTCGTTCGGATATATAC 2820 30 100.0 36 .............................. CGGTCGTCTTCGAGGACGGCCGCGTGGAGGGCGGGT 2886 30 100.0 36 .............................. GAGGAAGAGATACAGGCATTTGCCAGAGCCGAACGG 2952 30 100.0 36 .............................. GAGATGCCGACGAATACGGCGTTCAGGACAGACAGG 3018 30 100.0 36 .............................. GACGCACAGAAAGCGCGCCAAGCTGGCAGTCTCGTC 3084 30 100.0 37 .............................. TCTGGGTCTCGAACCCGCCGCCGACGTCGAGGGCGCT 3151 30 100.0 36 .............................. ACAACAATCGACGTTTTGTCCTGCTGCGTCTCCTGC 3217 30 100.0 37 .............................. TTACAAGTCCGGTTATATACCCATTGGAGTCGAGCTT 3284 30 100.0 37 .............................. TTCACCCAGCGGACGACCTTCCCCATAATTCGGAACT 3351 30 100.0 35 .............................. TCGCGGTCAGGTCGGAATCGGCGGCGGTCAGAGCC 3416 30 100.0 37 .............................. TGACGACTACGCCCTCGACTTTTCGAGCGAATGCTTC 3483 30 100.0 37 .............................. AGACGGAGGAGTTCCGCGCCGGCGGCATGGACGTCCC 3550 30 100.0 36 .............................. AAAACTGCGGGATATCTGTAATAGTCAGAGAGTTTC 3616 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================================ ================== 55 30 100.0 37 CTTTGAAACCTTCCTTTGAGGGATGGAAAC # Left flank : | # Right flank : TGCCCCCGAATGGTTCCTCGTTATTCTGTGTGGGTAAGGAACTATTCAGTCAAATTCAAATGTCCTGCGACGAGGTAAATCATATCGATGAAGGTCTGTTTGTTTCG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAAACCTTCCTTTGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 24640-30584 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYL01000031.1 Fretibacterium sp. OH1220_COT-178 scaffold_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 24640 30 100.0 36 .............................. TGGCTGTAGCCGTCGTAGCTACCTGCGAGGTCGATG 24706 30 100.0 35 .............................. TCATGGATGTGGGCCATCTGGGCTATTTCAACCCC 24771 30 100.0 35 .............................. CCCTGGCCTACTACAAAGACACGCTTTCCACACGC 24836 30 100.0 37 .............................. GGGCCTCGGCCATGCCCCACCAGGCGTAAACGCCCTG 24903 30 100.0 37 .............................. GGATCATGGCGGCGTTGTCGTGATCCTCTCCGCCGTT 24970 30 100.0 36 .............................. TTCCCGAAGGGTACGGCGTGTGTCATCGACTTGCCT 25036 30 100.0 37 .............................. ACCACAGACATCGCCAACACACTCGTGCATTGCGGTA 25103 30 100.0 35 .............................. CCTATAACATTATGAGCGCTCCGGTATCCCTATCA 25168 30 100.0 37 .............................. AGGCTTCTTTTTCTTCTCCCTGTGGTAAGTGCGACAT 25235 30 100.0 36 .............................. TGGAGGTGCGCTCGGCTTTGGTGTCTCGCCAGCGTA 25301 30 100.0 37 .............................. AGTACTAGGGCCTGCACCATCCACAGGGCACAGGCCC 25368 30 100.0 37 .............................. GCTAAAGCCTTGCTATTAGCGGCTTTACGGGCTTTAT 25435 30 100.0 35 .............................. ACGCTCCGCCGTTCCTGAGGGCATAAGGCTTGCCT 25500 30 100.0 37 .............................. CGTGACCGCAAGCGTGACGAACACGCTCCAACCCTTG 25567 30 100.0 37 .............................. GCAGCGGATTGTTTATCCTCTGGCGTTGTGGCGCTGC 25634 30 100.0 37 .............................. ACGCTCCGCCGTTCCTGAGGGCATAAGGCTTGCCTTC 25701 30 100.0 37 .............................. TCGAACACATCGCCTGCGCCCATTGTGGGGAAGTCTA 25768 30 100.0 37 .............................. GCTTTTCCAATTCGACCTGACGCTTCACCCTTTCGGG 25835 30 100.0 36 .............................. AGCTCCGGATGCTGTTCCTTGATGAGGATGTGCTTC 25901 30 100.0 38 .............................. CACACAGGCCCGTGATTGTGTTGCCCTACTCCGCTTCC 25969 30 100.0 37 .............................. GCGTGGGGAGGTCGGAGCTGCGGCAAGCGTCGTCGTC 26036 30 100.0 36 .............................. CCCGCTATATCCAAGTTCCTGCCAGTCGTGGGGATC 26102 30 100.0 36 .............................. ACCAGCGAGGATGTGCAAAACGTTGTTGCCATGGTT 26168 30 100.0 35 .............................. ATGTCCGTTCGATCAGCTTTGCGGGTGCTGTTCTG 26233 30 100.0 36 .............................. TGATCGAGTCCGCCGCCCCCATCCCAATCCCGAGTG 26299 30 100.0 35 .............................. TTCCTTACACCTCCGCGAGCTCGAGCGACAGCTTT 26364 30 100.0 36 .............................. CCAGATAAATTTGATTGGGGCAGAGCCCTTCCAGAC 26430 30 100.0 37 .............................. GTGTCGTTGAGATCGTTGATGCCCTGACCTCCAGCGA 26497 30 100.0 36 .............................. TGGTGTTTTTCCTCCTGCGGCCTGTGGCCGCGCAAA 26563 30 100.0 36 .............................. TGGCGTTTACGAGGACTGTCGTTATCTCGGTGAGCT 26629 30 100.0 37 .............................. GGGTGGGGAGGTCGGAGCTGCGGCACGCTTCGTCGTC 26696 30 100.0 37 .............................. TCGTATTTACCTCCGATTGTGTTTTTGTGCTATAATC 26763 30 100.0 37 .............................. GAGGCTAAATAGGTACTCGGATTCCTGTTTGGGTCTT 26830 30 100.0 39 .............................. TGGTCCTCTCCGCCGTTGTCTACCTCTAGTTCGACGCCG 26899 30 100.0 36 .............................. CACGAACCAGCAGACCTTATTAACGCTTTTGGACAC 26965 30 100.0 37 .............................. CGCGTGCGGTCAGTTTTCCCAAACCGGAGACACAACC 27032 30 100.0 36 .............................. CCTTCTGTGATGACCAACATCTTCCCGCCGGAGTCG 27098 30 100.0 36 .............................. TGTAGCGTATCTTCGCCATGAGGTTGTCCAGGTCCG 27164 30 100.0 36 .............................. AGGACTTTGAGCGTTGTTTCAGGCGGGATGTCCGTC 27230 30 100.0 36 .............................. AGGCAAAGCTGTCGATTCCATGTTGTTGGTTGGCAT 27296 30 100.0 37 .............................. TTCACTCCTTCTTTTTCGGGACAGTCTTAGGGATCAG 27363 30 100.0 38 .............................. AGGGGACACCATTCACAAGACCTGTGTGGTACCCACCG 27431 30 100.0 36 .............................. GCGCTCTGGCAGCGATCTACGCTCTGAATAAGCACG 27497 30 100.0 37 .............................. ACCGCTCCTTTGAGGACCTTTCCCTGTGCCGCGGAGA 27564 30 100.0 36 .............................. GGGCCTTTGTCGTTCCCCCGACGGTGAGATTGTCAA 27630 30 100.0 38 .............................. GAACATCCCAGAACTCCGAGTTCGTAGGATGCTCTCCC 27698 30 100.0 39 .............................. TTGATATCGGGTATAAGGACGGCAACAACCTCCGGGCGG 27767 30 100.0 36 .............................. ACCATATATGAGTGCAATTTACCCTACCAGATGACT 27833 30 100.0 36 .............................. ACGAAAACGACGATCTGCCCTATCGCCACGAGGACG 27899 30 100.0 38 .............................. TTACAAGAGCAAGTCTTGGACGCGCTTCTCCTTCCCCA 27967 30 100.0 36 .............................. ACTACGAGCGGAAGAAGGAAGCTGGTAAGGGGTTTA 28033 30 100.0 36 .............................. TGGGAGCGGTAGCCGAGATTGGTAGCAAGAGACATA 28099 30 100.0 38 .............................. GCGGCCGGTGCCGTGTCCGAACCATCCCGAACGTGACC 28167 30 100.0 36 .............................. ATAGACAAAAGTAACGGAGAGACGCCGCGTTATGGG 28233 30 100.0 37 .............................. TATACGTTGCAGTCCTTTCGTTATGTAGTTGCCTTCC 28300 30 100.0 36 .............................. CTAGAAAATATTGAGCTTGACAGAATACATACGTGA 28366 30 100.0 38 .............................. TAGCGCCTGTATGATCGTTCCGTTGTACCTATCATTTC 28434 30 100.0 36 .............................. CCGATCCCCGGAACCGTGAACGTGCCGCCGATGGCA 28500 30 100.0 35 .............................. ATATCCCAGTACAGGCGATGAAGATGTTGGTGGAG 28565 30 100.0 36 .............................. GCGCGGCCTCGATCTTTTCCGTGCCAAAGTAGTTAA 28631 30 100.0 37 .............................. ATTTAATCTGTTTCGATTTGCTTGTTTCGTCCCTCTG 28698 30 100.0 36 .............................. AAATTGTCCTGGAGCGAATCCCCCCACGTGGAGAGC 28764 30 100.0 36 .............................. ACGACTTCGACGCGGGGAATCCGCCCCTGGTCCTGG 28830 30 100.0 36 .............................. GCGCATCGAGTGGTTCTTTGCCCAGACACTGCGCGG 28896 30 100.0 37 .............................. ACAGGTCGTAGCTGTCCGTGCTTGCGTTTATGTGCTT 28963 30 100.0 36 .............................. TGTAGTCCGGTCTGCATTTGCACAGGATCTCCGTGC 29029 30 100.0 37 .............................. TTTTGAGGTCGGAATGTCCCAGGAGCTCCCGGACGGT 29096 30 100.0 37 .............................. TTCCCCGAGGACGCCGCAGGAGACCCGGGGCGGCGCT 29163 30 100.0 36 .............................. TGCGGGGCGGAGAACTTCCTTCCCAGGAGATCATCG 29229 30 100.0 36 .............................. TCGTTACCGTCCCCCGGCTGGAGTTGGTCGATCGGG 29295 30 100.0 38 .............................. TCGCTCTGTACCATCGCTCTTCGCTTATACATTGCCCA 29363 30 100.0 36 .............................. ATTGCTGGATTTTGCGCATGTTGAGTTCCCCGGAGC 29429 30 100.0 36 .............................. GACTTCTGGTTCGCCTGCGTCGACATAGAGGTCATC 29495 30 100.0 38 .............................. TAGGCTATTCATTCTCCTTTGCCATACTCCAGGTCTAT 29563 30 100.0 35 .............................. ATTTAATCTGTTTCGATTTGCTTGTTTCGTCCCTT 29628 30 100.0 36 .............................. AGGTCCGGGCGACGGTTGGAATGGTAGGCGAGGATA 29694 30 100.0 37 .............................. GGGCACGCACACCCGCGGCGAGGCGACGTTCGTCGGG 29761 30 100.0 36 .............................. CGGCGGCGTTCGTGGGGATGCTGGCCCATTTTCTGC 29827 30 100.0 37 .............................. GCAATAAACGCAGCAATACCAAGCGTTTACAGCTAAG 29894 30 100.0 37 .............................. ATTTAATCTGTTTCGATTTGCTTGTTTCGTGTCTTTG 29961 30 100.0 36 .............................. AAAGTACCAGAGCGCGGCGATCAGCGTGTCGCACCG 30027 30 100.0 36 .............................. GGTGTAGGTCCACAAGCTCTCCCTCCTCGCCGGTCC 30093 30 100.0 36 .............................. GCGTCTTTCAGAAGCGCATAGCTGTCCGTGCTTGCG 30159 30 100.0 36 .............................. TCTGCTTATAGAAATGCCGGAACTGGTCCGTGTTGC 30225 30 100.0 36 .............................. TTTGCTCGATTGCAGGCATCAACAAACCGTTGCTGC 30291 30 100.0 35 .............................. TGCACAGCTTCGCCCAGCCGCCCATCTGGTCCAGG 30356 30 100.0 36 .............................. TGCTCCAGCCTCCCCATTGAAGCCCAATACTTCCTC 30422 30 100.0 37 .............................. GTTTGCAGATCTGGTACAGAACCTCGGCCTGAAACTC 30489 30 100.0 36 .............................. ATTAAGAAAATGCACAGTTCCGCCAAAAATGGGCAA 30555 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 90 30 100.0 36 CTTTGAAACCTTCCTTTGAGGGATGGAAAC # Left flank : GTCCTGATGTTCTACGATGTTGGGGAAAAACGGGTAGGTAAAGTCCTGAAGACGGCACGTCGATACCTGACCTGGATTCAGAACTCCGTCCTCGAAGGGGACTTGAGCCCTGCGACTTTCGAGGCCCTCAAGATAGACGTTCGGAAAATTTTGGACTTGCAATACGACAGTGTTTTGTTTTATGCTTGGCGTACCGAACGCTACATGTCCCGTGAGGTGGTGGGGGTGGAACGGGGCTGTACGGATTTTATGGTATAGGTGGGGGCCACCCCTCGGCACATTGACAACTTCATAGCTGGTTCTATACTTTCTTTGCATCCATTCTTGCGTTGCGTGCGTCGATCCCCGATGGCGTGGAATAGGCGGGGGATCGACGCATTCTCAAAATAAAGGCTGAGCGTCTGTCTATCAGGGTTTGATGGGACGAGAGAGCTTTTTGTTTTTTGCTGTACTTCGGTCTGCTATACTTAACCGGTGCAGACACCGGCGTGTGTTTGCGG # Right flank : ATTTAATCTGTTTCGATTTGCTTGTTTCGTGTCTTTGCTTTGAAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAAACCTTCCTTTGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1-1297 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYL01000067.1 Fretibacterium sp. OH1220_COT-178 scaffold_66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1 30 100.0 36 .............................. AAAAGAATATGTTGGATATAGGTGTCGGCAGGAAAC 67 30 100.0 35 .............................. AGTCGGCCGTGAAGGGCGTCAGCGTCAGCTTCACG 132 30 100.0 35 .............................. CAGGCGCGTCACGCATTCGAATCGACCTAGTGATC 197 30 100.0 36 .............................. TTGTTTTCAGGGCAACGACCCCCGAACGCTACAGTC 263 30 100.0 37 .............................. GCAATAAACGCAGCAATACCAAGCGTTTACAGCTAAG 330 30 100.0 37 .............................. GACACTATTTTCGACGATGACCCGCAAAGGACGCGTG 397 30 100.0 37 .............................. AGGACGGGTGAGTGCGCTTGTACTCTGCGTTTACGAA 464 30 100.0 36 .............................. CCCGTCCTTGAATGGCATCTCCGTTCACGAGACAGA 530 30 100.0 36 .............................. ATTTAATCTGTTTCGATTTGCTTGTTTCGTCCCTTT 596 30 100.0 44 .............................. GCTGGAAACCAGGGATTCCGTGGGCCTGTGCAAGGGCTAAAAGC 670 30 100.0 37 .............................. TGAATGCTAAAACCTTCAGGCAAGCGGCTTCAGCTCC 737 30 100.0 35 .............................. GTGTGTGCGGCTTTGGTGCGTTCGCCATTCGCAAA 802 30 100.0 36 .............................. CATGAACCATTCCGCTTGAGTTTGTACTTCAGGGTG 868 30 100.0 37 .............................. TGCCCAAAAGGAAGGGCAAAATCTAACTAAAAGGAAG 935 30 100.0 36 .............................. GCAATAAACGCAGCAATACCAAGCGTTTACAGCTAA 1001 30 100.0 37 .............................. ATTTAATCTGTTTCGATTTGCTTGTTTCGTCCCTTTG 1068 30 100.0 36 .............................. CAAAGCACATAAACGCAAGCACGGACAGCTATGCGC 1134 30 100.0 38 .............................. AAATGACCCTGCGCTACGCCCACCTGGCGCCGGAGGTG 1202 30 100.0 36 .............................. CCATTCGTTCGATTTTCTGATGGAGAGCGCTATCGA 1268 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================ ================== 20 30 100.0 37 CTTTGAAACCTTCCTTTGAGGGATGGAAAC # Left flank : | # Right flank : ATTTAATCTGTTTCGATTTGCTTGTTTCGTCCCTTCTTTGAAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAAACCTTCCTTTGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 629-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYL01000071.1 Fretibacterium sp. OH1220_COT-178 scaffold_70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 628 30 100.0 36 .............................. GAGAAGCGCCGGGCGAAAATTCCTCGATATCCGGAT 562 30 100.0 36 .............................. TTGAATTTCGCCTGTTCCGTGGCACCTTGAAACACT 496 30 100.0 35 .............................. AAGATATGGTCCGTGTTTTCCTGCACGAGTCCGAC 431 30 100.0 36 .............................. GCGTTTACGAAGACGAGCCAGGGCTGGGCGATGGAC 365 30 100.0 40 .............................. CCCGGTGTTCCAGGCTCTTTCGAGCGGTAACAAGCCGCGC 295 30 100.0 36 .............................. CTGAGGACGTCACGGGCAACCTGCGGGAGATAGACG 229 30 100.0 36 .............................. ATGGCTTCGAGATAAGGGCTACCTCATCAAACGCAA 163 30 100.0 36 .............................. GGGCCAAGCCGTATTGGAGGAACTCGACGATCCGAT 97 30 100.0 36 .............................. ACGGGAAATTTACGTCGACGAGATATTGACCGATGG 31 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 10 30 100.0 36 CTTTGAAACCTTCCTTTGAGGGATGGAAAC # Left flank : ATGGAAACGCCTGGGATCATCGAGCTCTCGTTTTCCCATGTAG # Right flank : CA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAAACCTTCCTTTGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 138-565 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYL01000010.1 Fretibacterium sp. OH1220_COT-178 scaffold_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 138 30 100.0 35 .............................. CGTTTCAGAGTCGTCGAACGGCAGGAGCCTTTGTG 203 30 100.0 36 .............................. TCAATGACTGAGGCGTGCTGTATTCGCGAGTGCATC 269 30 100.0 37 .............................. TCGATGGCAAGCGCAAAGAATGGCAGGCGCTGAAGGA 336 30 100.0 37 .............................. TCTTCAGGTCCGCGTGCCCCAGCAATTCCCTGACGGT 403 30 100.0 37 .............................. GAAAGGGACATTTTTTGTTGTGCAATGAACGCACCGC 470 30 100.0 36 .............................. AGGAGCATATCGTCAAACCGCAGGGAAAGCCTGCAT 536 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 100.0 36 CTTTGAAACCTTCCTTTGAGGGATGGAAAC # Left flank : GCGATTTCAAACACTTGAATGTCTTTCATAATGTCTCTACTATACCACTTCTGACAATTTCGAACTCATCCTTACCCACACAGAATAACGAGGAACCAAACTTTGTCTATCGAACTGGACGTATGACGATGACCGCGC # Right flank : CGTGCTGGACGGCGCTTTATGGTTTAGCGCTGTATAGTGGCCCCCAAATAGCGAACCACGTGTAGTGTTAGAGACAGGTAAGGTCAGGATTGAAGGAAGGAGGAGAAAAAAGGAGAATAGACCTGCGAGGTGGTTCTGCCGTGAAAAACAAAGGGAATCGGTACAGTTCAAAATTGAAGGCCGAAGTTGCCCTGAGAGCCTGTCGCGAGGATCGGACGCTGGCGGAGCTCTCCTCGGAGTACGGGGTCTCCGCCATGCAGATTAGCCGCTGGAAGAAGACCCTGCTGGAACGGGCCGGAGAGCTTTTCGAGAGCAAGTCCCCCCTGGACATTGAAAAGGTCACGGATCCTCTGTACAAGGAGATTGGCCGTCTGAAGATGGATGTAGAGTGGCTTAAAAAAAAACGGGGAGGAATTGAACGCCGCTGAGAGACGCAGTTTCATAGACCCCTCCGATCCAGAGTTCAGCCTGAGACGCCAGTGCAGCCTTTTGGGCTTGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAAACCTTCCTTTGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1893-2458 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQYL01000010.1 Fretibacterium sp. OH1220_COT-178 scaffold_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1893 30 100.0 37 .............................. GGATACGCGGAGGATTGCGGAAGCTGAAGCGGCTGCG 1960 30 100.0 38 .............................. GGGGTTGTTCGGAGACCAGTGGGGCGAGATGGCGGAAC 2028 30 100.0 37 .............................. ACGGGATACGGTACACCTGGAGCGAGATCATGGAAAT 2095 30 100.0 37 .............................. GCAAGGACCGGTTGGCTCCGATGATCCGGGACACTCC 2162 30 100.0 38 .............................. GGGTTGCCCCCCTGAAAGACGCTCGCTACGCAGTTCAC 2230 30 100.0 36 .............................. TGGGCCACCGTGTAGAGTTCGCCCCTGACGACCTGC 2296 30 100.0 36 .............................. TCTTGGTGCAGATCACCTCACCGATCCCCGGAACCG 2362 30 100.0 37 .............................. CAAAAACCTGTTTCTCTACACGAAGATGCAGAACGTC 2429 30 93.3 0 .....................AG....... | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 99.3 37 CTTTGAAACCTTCCTTTGAGGGATGGAAAC # Left flank : CAAGGTTTCATGTATTTGTCCGCCGTTATGGATTGGTATAGTCGCTATGTGCTGTCATGGGAGCTTTCGAACACGCTTTGTATCGGTTTTTGTATGAGAGCCCTGGAAAGGGCATTGAGACGCGGCAAGCCCGAGATCTTCAACACGGATCAGGGAAGTCAGTTCACGAGCAAGGAATTTACGTCAAGGCTTGAGAGTCAGTCGATTCGGATCAGCATGGACGGTCGTGGACGCGCCTTGGACAATATTTTCGTGGAGCGCCTGTGGAGGAGTCTGAAGTACGAATGCATTTATCTGAATGCGTATGAAAACGTGCCTGAATTGCTGGAAGGGCTGAGGTGTTGGTTCAGGTTTTATAACGAGGAGCGGCCTCATACGTCCTTGCCGGGAAAGGCAACGCCCCTCATGATATATGAAAAGCGCCTCATTTCTTGATTTTTGACCTTAACTCTTCTTCGATATTTTTTGGTCCTTGACATGGGGGCCACTTTACTGTGTGC # Right flank : CAGCACTACGTGGAGCGGTTAAACAGCGGATTCGCGAGTTTTGTACCTCCCATCGAGATGCAAGCGGGAGGTCCGCCACTTTTCTTGACGCCCTTGAACACACGGTTTGATACGCGGCTTTGTGCTATACTCGGGGCATTCTTTTTGTCTTTTGCGTCCAAAGGGGCTTGAGGTATGGATTTTTCGAGGTGCAGGGAAGCTGTGGATATTTTTCCGGTCGGGACTCGGCGTCCCGTCGTAGCGCTGATCGGACCTACGGCCATCGGCAAGACTGCGCTGAGCCTCGATCTTGCCGAGAGACTGGGGGCCGAGGTCATCTCGGTGGATTCCCGTCAGGTCTATCGCTATATGGACGTGGGGACCGATAAAATCGCCGTCTCCAAGCGCCGCAGAATTCCGCATCACGCCGTGGACGTCGTGGACCCCGATGAGGTGTTCACGGTGGCGGATTTTGTTTCTCTCGCCCTCCAAGCAGTGTCTCGGATAGGGGCACGCGGCCG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAAACCTTCCTTTGAGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //