Array 1 46045-42251 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYX01000010.1 Haloferax sp. Atlit-10N P_contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 46044 30 100.0 34 .............................. CAGTTGTAGCGGCTGTCCTCGTAGGTGTAGGACC 45980 30 100.0 35 .............................. TGCCGGTGATGCACGTGATTTCTGGCGCAGCCATT 45915 30 100.0 35 .............................. GACTCGTGGGATAACTCGATGTCGGGGATTCCGAT 45850 30 100.0 35 .............................. CAGGGGCTCACAACCGTGCCGTTGCAGTCGCTAAT 45785 30 100.0 36 .............................. CGTCACGGACGCGTGACCGGGCGCTTCGAACGCCGC 45719 30 100.0 36 .............................. TGCCACTCGGTCGCGAGCGCCATCGGCGAGCACCGC 45653 30 100.0 35 .............................. CACTATGGCACGGAAGAACACGACTTCGTCTCCGG 45588 30 100.0 36 .............................. TGCACGGTTGACGACGTCCGCCGCGTCCTCCAAGAG 45522 30 100.0 37 .............................. TCCTCGGTCAGCCACGCCCACTTCCGAGAGTCCGAGA 45455 30 100.0 35 .............................. AGGGTGCCGGAGACACCACGCTGCTGGTCGGTCAC 45390 30 100.0 42 .............................. TGGGCGGCTGGTGGCTCCAGAAAGAGCAGTGCGAAACCTTCC 45318 30 100.0 35 .............................. CTCTCTTGGGGTGTGAAAAGACATTGAGGGTTGGG 45253 30 100.0 38 .............................. ATCCCCGAGGGCGGCGGTCTCGACGACACCGGGAACTT 45185 30 100.0 36 .............................. GACCTCTCGGTGCAGGAGTTCGACAACATGCTTGTT 45119 30 100.0 37 .............................. AGATCGCTGTTGTCGCCTTTCAGGTCAACCGAGCGTT 45052 30 100.0 37 .............................. CTGTTCCGACGGGCGTTCGCACAGGGGCAAACAAAGC 44985 30 100.0 38 .............................. TGTGTTCTCCGCGCACCCAAACGGTGACTTGTTGTCTC 44917 30 100.0 35 .............................. ACGCGCCGCTACAGACCTACCAAACGCCCCGCTGT 44852 30 100.0 36 .............................. TGCTTTTGCTGTGCCTCTGCATAGGCGTTGAGCGTA 44786 30 100.0 37 .............................. TCATCGACTGATCCCCCACCGATAAAAACGGGACGCG 44719 30 100.0 37 .............................. GATGCTACGTAACGACTGCTAAGTGGATTCATTCTAT 44652 30 100.0 33 .............................. GGTTGTCAGTCTCTTGAAGGTCACGGTATTCTT 44589 30 100.0 35 .............................. ACAGGACGGCGGCTAACCCCACTATGGGGAGTTTC 44524 30 100.0 36 .............................. GACCTCACCGACGAAATCGAACGGATCGACGACGAA 44458 30 100.0 34 .............................. AGGTTGTCATCTCATGTTGCCTGCCGTAGCCTGG 44394 30 100.0 36 .............................. AGCGAAATGCGGTTTATCAAGGGCCAACGGCAGCAA 44328 30 100.0 36 .............................. GGTCACTGCCATCACGACTCGATGCAGACTGACCCA 44262 30 100.0 35 .............................. TGGGCTGATGACGACCAGATCGACGGACAGGTTGT 44197 30 100.0 38 .............................. GAGATGCTCCTAACAGTTGAGACGGGGGCGATGACGTG 44129 30 100.0 37 .............................. GCTCGTGGAGGTGCGGCCATGATACTTACGGCGGCAT 44062 30 96.7 36 ......T....................... GTCCGTCCCGAGCGACCCCTGCGCGCCGAAGTCAAC 43996 30 100.0 35 .............................. GGGCATGGGAACACAACTCCCACGGCAGATGACCG 43931 30 100.0 36 .............................. ATGTTGAATCCGAGTTCGACGAACGTCCCGCCCGGA 43865 30 100.0 44 .............................. GTCCATGAAGTCGATGGTCGTCCGCGGCGTCCGGACGACCATGC 43791 30 100.0 35 .............................. AAGGCGTCTGGTGCGCTCACGTCGAGCGACCCGGT 43726 30 100.0 35 .............................. TCGTAGAGGTCGCCGGCGACCCACTTGCCGTCGTT 43661 30 100.0 37 .............................. AGGACAAGGACTATTATCTGACAACGTTTACCGTGTT 43594 30 100.0 36 .............................. GAACTACCTCGGAAATTCACCGTCGAAGCCAACGGC 43528 30 100.0 37 .............................. GACGGGAGCGCATGGGTCGACTTCAACTGATACGCTT 43461 30 100.0 35 .............................. ACCGACGAGGAGCTGATTCAGATGCTCCAAGAACT 43396 30 100.0 34 .............................. CAGCGGTGAGTGTTGCATCGGCGGCCGTCCCAGA 43332 30 100.0 36 .............................. ACCGCGAGTAGCACGAGTAGAGCTAACCCAAAGACG 43266 30 100.0 36 .............................. AATCGCCGGGCGCTGTATCTCGAAGTTGGTCCCCTT 43200 30 100.0 37 .............................. GCTGACGAACCCTAACTAATCATGTCCGACGCCAAAA 43133 30 100.0 36 .............................. TGCTTTTGCTGTGCCTCTGCATAGGCGTTGAGCGTA 43067 30 100.0 37 .............................. GTTAGTCGGTGCGGCGCAGCATCTCCTGAATAAACTC 43000 30 100.0 35 .............................. CCCGATAAGAAGAAGATAGCCACCAAGTGTGAGCC 42935 30 100.0 32 .............................. GTCGGAACAAGTTCGGAGCTTCCTGCGCGATT 42873 30 100.0 38 .............................. TCACAGTCACGCGGGACATTCGAGTGAACGGTCTCACT 42805 30 100.0 35 .............................. GAGCTGAACTCGACAGATTCGGTTAGTGATTTCGC 42740 30 100.0 35 .............................. GGGATTCCGTTCCCGTACGTCGCGCTCCGCAAGGG 42675 30 100.0 36 .............................. CGGTGTCGCTGGTTAAATTGGACATTCGTGACTCCG 42609 30 100.0 35 .............................. GACACTCGGCAGCGGCCGTCTTCGAAGAACGAACA 42544 30 100.0 37 .............................. AGGATTTCCCGGGATGAATCTTCTTTCCCCATCATCA 42477 30 100.0 33 .............................. ATCCGATTGCGAATGCCCATGTACACGAACGTC 42414 30 100.0 37 .............................. CTCGAAATCGACGTCGACCACACATCGACGACGGACA 42347 30 93.3 37 ............................AT CGCGTCGAAGCCCATCCCTGCTCCATCTTGACTTCCG 42280 30 93.3 0 ........A...............C..... | ========== ====== ====== ====== ============================== ============================================ ================== 58 30 99.7 36 CTTCCAGCCGGACCGTAGACGGGTTGAAGC # Left flank : GCTTGACCGAACCGTCAATCACCCGCGCCTCAACCGGAACGTGAGCTACAAGACACTCGTCCAGACGGACGTCTATAGCCTCAAAAAACACATCCTCACCGGAGAACCATACCACGCAACGGAGCGCTGGTGGTAATGTTCGTCCTCATCGTCTACGACGTTCCCGCGGGACGGACTGAGCGCTACAAGAAAATGCTCCGCCGCCGCCTCGAACACGTTCAATACTCGGTCTTCTACGGTGACATCACGCCCGGGCTTCTCGTCGAGATCAAAAACGACATCGAAGATCTCCTCGAACCCGACGATTCGATCATCGTTTTCGAAGCCGAACGCGTCGGGGCCGTCGATCTCACCACGTACGGCGACACCGAAGACCCCGGAAGCCGCTTCACCTAACCACTTCTGTCGACCCCCCGGGGGTTGACCCAGAATTGGGGGTCGACAGAAACACTTGAGTGAATCCCCAAAGAAGAGCCGCTCACGCCCATAGATCGGGCATA # Right flank : TGGGTTCTTGTCAAACGCCGTGGTCTTGCCCAACCATCTTGCTTCGTACTTGGCCTTCGCCTTGTCGTCGCTATTACCAACTACAAACGAGGAGACCAGGAAGTACGATCACCACAGTATGAGCAGAGTTCTATGACACCTCTAATTCAACCCATGATTCACCAACAACTGCTGGTGCTTCCGAGAATTACCCACAGTCGAAGCAAGATCACCGGCCTGAAAGATACCCCCTTTGCCTGTAGAATAGCCTCGGATTGTTCGTCAAAACTCACACCCTCACTTTTCCACCTAAGCGAGGTTATCCAGACGAACTCGCTATCCTACTCTGACTCAATTTTCGGAGCTGAGGCTAGTACACGAAATCAGGAGACAGAACGTAACATCAACCGCTGTCTCTCATACCTCCTCAGTTGCCTTCGCTCGTAGTACCTGAATCAAAGAATCAATGAATCAAAGAGTCTATGAAGTTGTTAATTTTGGAAACCAAGAGTTCAGGATTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGCCGGACCGTAGACGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 56436-60260 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYX01000010.1 Haloferax sp. Atlit-10N P_contig000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 56436 30 100.0 36 .............................. ATTCGCGTCTCCACCGAGCAGCAGAAGCAAGACGGG 56502 30 100.0 37 .............................. GGGGTTAGTCGGCGCGGTCGTCCTCCGCTTGCACCGT 56569 30 100.0 37 .............................. CAACGGATAGCGACCGGCGGTCGCGTACCCCCGGATG 56636 30 100.0 34 .............................. ACAATCGACGACGAACTGCCGGTCGCAAACCAGC 56700 30 100.0 35 .............................. ATCCGCCAGTTCGCGAACGACCTCGAAATCCTCGC 56765 30 100.0 36 .............................. GTCCAGAAGTCGCAATCAACACGACGAGTGCCCTTC 56831 30 100.0 36 .............................. CGCCGTAATCCGCCAATGCTCCCGACTGAATGGATT 56897 30 100.0 36 .............................. CACTCGTAGGCTTCGCCGACCGACTCGGAGAGCGGG 56963 30 100.0 37 .............................. ACGAGGTCTGCACCAGAGCAGACGGCTGGGAGACTGC 57030 30 100.0 35 .............................. AGATGTCCGCGATGCGGTGACGAGACGGCGACGAA 57095 30 100.0 36 .............................. TCTGCGCGCCAATTCGATCACACGGCGACAGGGTAG 57161 30 100.0 35 .............................. TTTTCCCAACGCCGGTTTGTCCGTTCTGGGCCGTG 57226 30 100.0 36 .............................. AGTCCAAGGACGACGAACAAGATCGTTAGTTCAGGC 57292 30 100.0 36 .............................. AGTGGCCGACGCGCGTTCTCTGAGTCCTCGTGTTCG 57358 30 100.0 37 .............................. GCGGTATCAGGTCATCGACAACGTGACTGGTGTGCTG 57425 30 100.0 34 .............................. CTCCCGCTCCGCATCGTGGACAGTTACCGTCGGT 57489 30 100.0 35 .............................. GGCGCTCGTCCTAAATGGAGATCCGCTGTGGCTCC 57554 30 100.0 36 .............................. GTCGCCGTGGGGTCGTTCCGCGTCGAGAAGTGTGGT 57620 30 100.0 34 .............................. TATCGATCGTCTCCCCGACCGCGTCATCGGTGGA 57684 30 100.0 36 .............................. GCAAGATGGTAGTTCAGATAGTAGAGAGGAGTCTAA 57750 30 100.0 34 .............................. CGGCCCCATGAATGGGTGGTAATGATGACTGACA 57814 30 100.0 37 .............................. GGCTACAAGGACATCACCGCGTCGGCGCTTATCGACG 57881 30 100.0 37 .............................. GGCTAGGAAGTGTAATCAAAGTGAGAGCCGCATGACT 57948 30 100.0 37 .............................. CGTTCGTAACCGACTGGAGTATCTGGTTGACCAGGGC 58015 30 100.0 36 .............................. GAGATTCTCCACGTGGGTGCGGACGAGGAGTGCGAC 58081 30 100.0 35 .............................. CCGGATGGACGACCGCGTTGGCGGGAAGCAAGAAG 58146 30 100.0 36 .............................. TGGATGCTCGCCATCGTCCTGTACAACTCGTGGGCG 58212 30 100.0 33 .............................. CCGACGAAAATATCACGTCGTTGAAATTCACGT 58275 30 100.0 36 .............................. GTCCGGCCTCCGATGCTCGTGAGTTCGATGACGGCA 58341 30 100.0 36 .............................. GCCGACATCGCCAGTGGCGACGACCCGACCCGCCAA 58407 30 100.0 35 .............................. TCTGAAATCCCGGAACCGTGCCGCCCAGCCCTCCG 58472 30 100.0 36 .............................. GTCCGGCCGCCGACAGCCGTGAGTTCTATGACAGCG 58538 30 100.0 34 .............................. GGCACGTCGAAATCGTAGTCGAACTCACAACCGA 58602 30 100.0 34 .............................. GGCGTGTTGTTGCTGCCGTCTTTATTCCCGCTCA 58666 30 100.0 35 .............................. CCCGAGCCGAGCCTGACAACACACCCTCGACCCTT 58731 30 100.0 36 .............................. GACGACGGTGCCGCCCCCGATCCGATGATCGAGACG 58797 30 100.0 36 .............................. ACCGGTTTCTCAACGCTCTGACCATGGAACTCGAAG 58863 30 100.0 34 .............................. CTCATCGTGAACAAAGAAGAGTTCCACGAGGCGA 58927 30 100.0 35 .............................. CAGACACGTTGACATCGACTTCGACCGGTGGAACA 58992 30 100.0 36 .............................. TGTTCACAGATGGGCCGGTGAGAGAAACCATCCCGT 59058 30 100.0 35 .............................. ACGACCGAGATGGTCGGTCTCCGTCGTGATCAGCC 59123 30 100.0 35 .............................. ACGACCGAGATGGTCGGTCTCCGTCGTGATCAGCC 59188 30 100.0 35 .............................. TTCATCAGCGACGCCAGCGACTGGTCGTCGTCGTT 59253 30 100.0 35 .............................. ACGGCGACCGGCTAGAAACGACCACGAACCGACAC 59318 30 100.0 37 .............................. TCGGTCCCAACGGCGGTGGGGTCCGTCCGGGCCGAGC 59385 30 100.0 35 .............................. GACGTGAGGTAGTGCGCCGCGTTCCGAGCGTTCAC 59450 30 100.0 35 .............................. CGACCGTCGTCGTCGCGGTCGCGGTCGAGGTGGTC 59515 30 100.0 37 .............................. AACGGAAGTGCGCTGTCTCGCCGTCCTCAGCTTCCAG 59582 30 100.0 34 .............................. TAGACGAACGTGTAGAATCCGTCGCGTCGAGCGA 59646 30 100.0 36 .............................. GACCACGAAAGGGACGGGTGCTTTGTGGAAGATTGG 59712 30 96.7 35 .............................C GAACGGCGGGTTCACCGCGAGTTCTTCCCGACCCT 59777 30 96.7 35 .............................C CGTATCATGACACTATTCATGAGTTTTTCCCCAAG 59842 30 96.7 36 .............................C AAGGCGGTCTTCAACCGTATCGACGACCGCGACGAC 59908 30 96.7 34 .............................C TGTATGAGTAAGCGCGACCTGAAAAGCGGCCAGT 59972 30 96.7 35 .............................C TGAGGGTCACCCTGGAAGACGGGGGACGCGATACC 60037 30 96.7 33 .............................C GGGAGATCGTCGACCGACTTCCCGCAGTTCGTG 60100 30 96.7 36 .............................C GCCGACGACGGGAAGAACTTCGTCGACGGCGACGAC 60166 30 96.7 35 .............................C GTGTTCTGCCCGGAATGCTGGTTCGACCTATCCGA 60231 30 90.0 0 .....................AA......C | ========== ====== ====== ====== ============================== ===================================== ================== 59 30 99.4 35 CTTCCAGCAGGACCGTAGACGGGTTGAAGG # Left flank : CGAGAACTCACGCACGCCCTCGAGACTTGCCAAGGAGAGGTTCTCGCACGCCGAAGTCTCATCGATAGCGGATACGAAACCCGCGACGTCATCGTCGCACACACCCCGGTCGAGCGCAGAGCAACCAAGCGCCTCACAGAACTCCTCAGTGAGAATTCTCACGAACAAGCAGCGGGGTTCGAACTACTGAACCACCTCAGTGGTCTCCGTGTCTCCGTCCCTCTCAAGAGCCTCGAAGGAGTGACCACGATCACCCGAATCGACGGCCGACCACTCAACGACCCCGAAGGGGTCAACGTCCTCACCACCACCCGAACCGGAAACGGTCAATTCTACGATCTCGCCGACGGCGGCCTCAGAATCACCGACCTCATCAGCGACCGCTTCTCCATCTAATCACTTCTGTCGACCCCCCGGGGGTAGACCCAGAATTAGGGGTCGACAGAAACACTTGAGTGAATTCCCCGAAAAGAACCGTTCACGCCCGCATATCGGGCATC # Right flank : CGAAACCGTCGGCTTCGACACAGTGCTGGGACCCCTGATAGCGCAAACGCCGAGTTGATTTAAGCACGTATCACCAACACCTCTGCACAGATGGCTCGTGTCGTCTACTATCACCATCCCCAAGCCGAGAACTTCTCGCTGAAGTATAGCTCGGCCTCGCAATCCGAGATTCTGTCCCGTCGTGAAGATTCAAACGGCGCGACGAAGCTCATCGGCTATCCGTTTGATACCCCAGTCTATGTCCTCTATGAGAGCGACACGGAGATCAAAGACGCAAACGAGGTTGATTTCGACCAGAAATGGCTCAGCGGTCGAATCGCCGAGCTTCCCCGGGAGGGGCAGGTCGTCGCGTTTCGATTAGTGGAATTACTCGAAGCGGCTGTAGACGTGAGAGAAGAAGAAGAGTTCCGCCTCTATAAGGAGTTTGAACCACAGAAGATTCGGCAGGCACTCGACCACGTCTCGTGGGGCGCACCACTCCCACAGGTCGCCGGTGAGCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGCAGGACCGTAGACGGGTTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //