Array 1 275980-267964 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015243.1 Halotalea alkalilenta strain IHB B 13600 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 275979 28 100.0 32 ............................ AGTGTTCCACTACCTGGATCGCAGGGCGTGGC 275919 28 100.0 32 ............................ AAGCTTTGCAAGCAAACCGGGTTCGATTTTAT 275859 28 100.0 32 ............................ AGTCGGCGCGCGTGACGATGCAACTAATGCGT 275799 28 100.0 33 ............................ CAATATTACGGAGTGTGAACGATGCGCAACGAA 275738 28 100.0 32 ............................ GTCAAAGAGCATGCGCGCTGTGTGATCGAGCT 275678 28 100.0 32 ............................ AGAACCGAATGCCTGTGGCTGTCGCCGCGGGT 275618 28 100.0 33 ............................ CGATCTTTTCACGGAGTATCGGCGTATCACGAA 275557 28 100.0 32 ............................ GAGAGCAGACGCGAGTGCGCCACGTTCGCCGC 275497 28 100.0 32 ............................ AGAGTGCGGCGGCAAAACATTGCCGCCAATTC 275437 28 100.0 32 ............................ AGGTGCGCATGCTGTTCGCAATAGCCAGACGG 275377 28 100.0 32 ............................ GAGTCGATGAACTGGTCCGAGAGCAGACGCGA 275317 28 100.0 32 ............................ AAGCGGCAGTCTACGGAACGGTGGCCGCACTG 275257 28 100.0 32 ............................ AACTGGGATGCGCTGACTTGCTGGGTCATGCC 275197 28 100.0 32 ............................ GTCTCGTACAGACCGATGAACCCGTTGCGATT 275137 28 100.0 32 ............................ GGTGGCTCCGATTATTTCAGACCACTTGTTTT 275077 28 100.0 32 ............................ ATCACGACGTTCGACAGCAGTAGGTCGTAAAC 275017 28 100.0 32 ............................ CAGGTGAAACAGCGTTCCGTGCAATCAACCGC 274957 28 100.0 32 ............................ GAGGACACCAACCCGTTCCAAAATCTACAGCT 274897 28 100.0 32 ............................ TCTCTTTCTCCATCGCCGATTCCCTACATAGG 274837 28 100.0 32 ............................ ACCGGGCGAAGACGAACCGAGAGGCATTGGGC 274777 28 100.0 32 ............................ TCACCTGGACCCACGGCGAGATGGTCAAACGC 274717 28 100.0 32 ............................ TAGACGCCACGGGCGAGCTGAGAGAATATTAT 274657 28 100.0 32 ............................ TGAAAAAAGGCCGCTTAGGGGCCGTCTCCATG 274597 28 100.0 32 ............................ GCCGCGGCTGCGGCGCAGATTCGGCTCCTGGG 274537 28 100.0 32 ............................ TGGGCGAGGAGCTAATCCGGTCCGCGTTAGCT 274477 28 100.0 32 ............................ TCAACCCGATCGCGCATTGTAGCGTTATCATC 274417 28 100.0 32 ............................ GACCGGCACTACGCGAACGCCGCCGGGCAGAG 274357 28 100.0 32 ............................ CAGGCCTCGACCAACGCTTCGCGCCTCGACCC 274297 28 100.0 33 ............................ TACGGCTGGTTCACGCGCGCTCTTGCGCTTCTT 274236 28 100.0 32 ............................ ATGGATTATCTCGCTGCAGGCCAAGCGGTGGC 274176 28 100.0 32 ............................ TCCACCCGCTTCGATCATCGCCCCGCCCTGAG 274116 28 100.0 32 ............................ GTCAGTGCGGCGGTGGCCGCTGATAGTCACGT 274056 28 100.0 32 ............................ TTGGATCGGTGGTGATCATGCTGCATGCTCCT 273996 28 100.0 32 ............................ TCGCGCGTGGGTATCTCGACGCCGTCGTCAGC 273936 28 100.0 32 ............................ TGAGAGGCGGTGCGCTCCTTCATCATCCCCTG 273876 28 100.0 32 ............................ CAGCGAGGGCCGCGGGGAGCTCAATCGTCGCG 273816 28 100.0 32 ............................ TGAAGAGAAGCCGGGGGCTGGAGGGCATGGGG 273756 28 100.0 32 ............................ AGTGGGAGGGAGTGGCGGAAGTGGTGCAGCGC 273696 28 100.0 32 ............................ GGGAGAGACACGCGGTTTCGCCGGAGGACCCC 273636 28 100.0 32 ............................ TAGACGACCTAGCGCCCGTGCGTTGCTGCCCC 273576 28 100.0 32 ............................ TAGACGACCTAGCGCCCGTGCGTTGCTGCCCC 273516 28 100.0 32 ............................ ATAATGCATTTTACAGCACTAAAAAGCGACCC 273456 28 100.0 32 ............................ AGCATCAACAGCCTCATGAACAATGCTATTAG 273396 28 100.0 32 ............................ GACACGGCAAACCACGCCGCGCGGCCGAGCGT 273336 28 100.0 32 ............................ TCAACCCGATCGCGCATTGTAGCGTTATCATC 273276 28 100.0 32 ............................ TAGACGACCTAGCGCCCGTGCGTTGCTGCCCC 273216 28 100.0 32 ............................ TAGATCGAGCGGAGAGGGGCTTACACCGACGC 273156 28 100.0 32 ............................ GGCACGCCGGGCACGTAGGGCACGGTGGTGAT 273096 28 100.0 32 ............................ AGGACGGCGCCCGCGCCCGCGCCGCGGAGGCA 273036 28 100.0 32 ............................ GAAAGGAAAGCATTGACAGGCTCTCCGGCTGT 272976 28 100.0 32 ............................ GCACAGAGATTGAGCACCTCGCGCAAGTCGCC 272916 28 100.0 32 ............................ GCTACGCTCGAGCGACAAAATGCCGCGGCTGA 272856 28 100.0 32 ............................ AGCGGCAAGGGACTACAAGAGCGCCAGCGGAT 272796 28 100.0 32 ............................ ACACACATACACGCACGACCCGGCGCCAGCCG 272736 28 100.0 32 ............................ GGTCGCTAGATCAAATGAATACGAACCATCGT 272676 28 100.0 32 ............................ AGCCAGTGCCGAGCTACTACGCCGCCTATCGC 272616 28 100.0 32 ............................ AGCCGATATGACGAGATTTCGAACGGCTTCTC 272556 28 100.0 32 ............................ AGCCCAGTCTGGATGGACATCAACCCGAGCGA 272496 28 100.0 32 ............................ ATCCTGTTACTCAGCCTCGGCACGTCTGTCGC 272436 28 100.0 32 ............................ GGCGAGAACATCGCTCCTCACCTCAATGCCGA 272376 28 100.0 33 ............................ CTCTCGGCGACGCGAATGCAGCATTCAGCTCCC 272315 28 100.0 32 ............................ AGCGAGATCTACAACGACGCGCTCGCGGGATG 272255 28 100.0 32 ............................ AGGCTGAGCAGTACCTATCGGATGATCTGTCC 272195 28 100.0 32 ............................ GGGCGATGCGCTGCAAAGCGCTCTTTGCTAGT 272135 28 100.0 32 ............................ ATCTGCGGATACAACACCCGGCCCGTCGATGG 272075 28 100.0 32 ............................ TTTGCGGCCACGGCGCCGACTGAGTTCGCGAC 272015 28 100.0 32 ............................ AGGCTATCGCCGTCGCATTTGACGAGATCGAT 271955 28 100.0 32 ............................ GCTGATAGTCACGTATCTCATTGCTCACCCCT 271895 28 100.0 32 ............................ GTCGGGAATGCAGAGCCAGCTGCCGACACCGC 271835 28 100.0 32 ............................ ATCTGCGGATACAACACCCGGCCCGTCGATGG 271775 28 100.0 32 ............................ CGGCAGCGCGGCGGGGCGATCGCAACGTCGAG 271715 28 100.0 32 ............................ TGGGGCATATCTGACCGATTGACAATATAGAC 271655 28 100.0 32 ............................ AGACAAATCTCCTTTAACATCAATGACAAAGC 271595 28 100.0 32 ............................ CGATAGCTCGCGCCTCGACCCGGCGCGAAGCG 271535 28 100.0 32 ............................ TAGTTGCTCGAGCGCATATTGCACTAGATACG 271475 28 100.0 32 ............................ TTTCAGGAGCCAAGAAATGAAGATGAAGTCGT 271415 28 100.0 32 ............................ GTACCGGCTAGAACGCATTACTGAGCCATGGG 271355 28 100.0 33 ............................ AACGGTGGCGCGAGGCCGAGAGCCCGCCGCGTC 271294 28 100.0 32 ............................ GCCAGATAGCCCGAGCGCGGGGCGACGTGATC 271234 28 100.0 33 ............................ ACCCGAGTATCGTCGACAATTCCCGTTTCGCGA 271173 28 100.0 32 ............................ GAACGTGCCGTGGCCGAAACCGTGTCCCTCGG 271113 28 100.0 32 ............................ AATGCATTCCGCTGGGTTCCATTCCGCCGTAT 271053 28 100.0 32 ............................ CGACGCCGAGGAGCCGACGCCCGAGGAAATCC 270993 28 100.0 32 ............................ AAACCGGCAGGCTGATTGAGCGTTACCGCGTA 270933 28 100.0 32 ............................ GACTGCAGAGTGGCGATGGTTTTCTTTCCCTT 270873 28 100.0 32 ............................ ACGACTTCGGGAGCGGCTTTGTAGCGTCCTGC 270813 28 100.0 32 ............................ GCATATGACACCTATGTTGAACCATTCGGCGG 270753 28 100.0 32 ............................ AGGTCGCCGAGAATGATCGGCTGAGAGAGGAG 270693 28 100.0 32 ............................ ACGACGGTTCACGCGGGCCGGACGGGGAACGG 270633 28 100.0 32 ............................ ATCTACGCGGCCCCGGGTCGTATCTCCCCGGC 270573 28 100.0 32 ............................ AATGCCCGTGCTCGGCTCGAGACATGGCGTGC 270513 28 100.0 32 ............................ TGCGCTATGCCCGCCAGCTCCAGGGCGAGAAA 270453 28 100.0 32 ............................ AGTACTCAGAACTTGGGTGCGCGCTAACGCCC 270393 28 100.0 32 ............................ GCAGCCACCGGTACCGCTCGGCGTCGGCGGTC 270333 28 100.0 32 ............................ GTTAGCCACTGCCCTGATGTTTGCGACGCTGG 270273 28 100.0 32 ............................ GAATGAGGAGAGCAAGAGCCGCCCTCGCCCCC 270213 28 100.0 32 ............................ TCTTTCGGGGTGCGATACCAGCACTCGATCAG 270153 28 100.0 32 ............................ ACTATACTCGACGCGAGACGATGACATGAGCC 270093 28 100.0 32 ............................ ACCTCGCTCCCGCATCCGCAGCCTTTCGGAAT 270033 28 100.0 33 ............................ CGAGTAGAAAACCGACACCGTATTTGTCGGCAA 269972 28 100.0 32 ............................ TGGTGGGACGATTAATTCGATCCGTGAACAAT 269912 28 100.0 32 ............................ GGATGGGTCGCCCGCCGCTGGTCGGCGCATCA 269852 28 100.0 33 ............................ AAACCCTGAAAGCCCGTCAATCTGTTATTTGGA 269791 28 100.0 32 ............................ CGGGTACAATGAGGAATATTGGCTCGCCAACC 269731 28 100.0 32 ............................ CGTCTGCGGGCGTCTGTGCGCCGCACATCCGA 269671 28 100.0 32 ............................ TGACAGAGGGCTGGGCAAAAGAAAGCCCGCCT 269611 28 100.0 32 ............................ GTCCTCACGCTCCCATACGTCATCGGGGAGAG 269551 28 100.0 32 ............................ GGCGAGGTCAAGAGATACAATCGGCGCTACTG 269491 28 100.0 32 ............................ GGGCGGGCGGAGCTTTGCATGGAGACACGATG 269431 28 100.0 32 ............................ CGAGGTCGTGACGATCACCCGCGAGGAGTACG 269371 28 100.0 32 ............................ TGCCGGATGCGATCGCGCTCGCCTTGCAGTTT 269311 28 100.0 32 ............................ ATCGACAATGGTTATGATCCTGAATTGTGGAA 269251 28 96.4 32 ....................T....... TTTCAGAGTGCGGCGAGCGATTTCAGCGCTTG 269191 28 100.0 32 ............................ TGAAAGATATTGAATCTCCTGATAACACCAAC 269131 28 100.0 32 ............................ TTTGGGATCGAGATGTTCCTTCTGTCCGACAT 269071 28 100.0 32 ............................ AGTTTCATCCGAACCTTCGCCTGCATCGGCAG 269011 28 100.0 32 ............................ TTTGTCATTTTCTTCCACCTGTTAAGGTTAGG 268951 28 100.0 32 ............................ AACCTGCGCGGAAATCCCGAGTACATCACGAT 268891 28 100.0 32 ............................ GGCCGGAATCCGGTCGGGCGGAACAGATACTC 268831 28 100.0 32 ............................ TGGGGAACGAAGTCGATCGGCACGCCCACCGG 268771 28 100.0 32 ............................ GTCGAATGGCCGATCGAGCGATACCGAGCTGC 268711 28 100.0 32 ............................ CGGAAACTGGTGACTGGCGCATCCTTCTGCGT 268651 28 100.0 32 ............................ AGCTGCAACGCGAAGATCACCACCGGCAGTTT 268591 28 100.0 32 ............................ TCCCTCAGAGCGCTTGCCTGACCGCGTTCTAC 268531 28 100.0 32 ............................ CAGTCCCAAAGGATCGCGTCTATGTCGTCCGC 268471 28 100.0 32 ............................ TGGTCAAAGGTTCTGAAATCCTCCTTGCTAGC 268411 28 100.0 32 ............................ TATGGGACAGCGCCTGCACCCAACGCGACCTA 268351 28 100.0 32 ............................ CAGACAGCTGCCAATCACCCTCCGATCAGCCC 268291 28 100.0 32 ............................ TGATGGAGCGTGGCGAGATCGAGATGCCCGAG 268231 28 100.0 32 ............................ ACACCCATCCCGGCGACTCTGGCGGCACGACC 268171 28 100.0 32 ............................ CGCTCTCTGAAGGTGATTAGCGTCCGTGGCGA 268111 28 100.0 32 ............................ GGCTACAAGCATCGGATCCGCAACATCCTCAA 268051 28 100.0 32 ............................ TGTCGATCACCGTGCGGATGATCGCGGCGGGG 267991 28 75.0 0 ...........CGCG..T...C..T... | ========== ====== ====== ====== ============================ ================================= ================== 134 28 99.8 32 GTTCGCTGCCGTATAGGCAGCTCAGAAA # Left flank : CGCGGCTGGAGCAGTTGATGGCGATTTCGTGGTTCACCGGCATGCGTGACCACTTAATGCTGGAGGCTATTCAGCCAGTGCCTGTTGAAGTGCGCCATCGGATCATTCGGCGCCGACAGTTCAATACTGGTGGTGCCAGCCGGGCGAAGCGGCTTGCCCAACGGCAGGGCATTGAAATAGAAGAGGCGCAGCGTTTGATGGAAAAATCCGCCGCTCGGCAGATTGCCCTGCCTTTTGTGCAGGTCAGTAGCCGCTCCAGTGGACAGCGGTTTGCGCTATTCATCGAACATGGCCAGCCGCAATCGCAACCGGTCGCCGGTCGCTTCAATCATTACGGATTGAGCAGTGAGGCCACTGTGCCCTGGTTCTGACCCTTTTTTTGAAAGGTTTTTTAACGCCAATTAAATCAGTCTGTTACTGACGCCTCTCTGAAAAGGGGGGCATTGTTTCATCAAGTGATTTCTTTTTAAAAATCAATAGATTATCTTGGGTGGGTTCTA # Right flank : CTACCTCTACCTCTGCACTTATCCGTTTTCGCCCACCCATAGTCGATATGGGTGGGCGGTGGGTGGTCCGGCTACCAGAGGTATCTCAGCGTCGTTCGTACGGCGCGTGAGTCGCCGTAGAAGGCGGCGTTGCTGAAGTCGTTGACGTAGGAGATGTATTCGCGGCCGAACAGGTTGGTGGCGTTGAGCGATAGCTCCAGGTTCTGGTTGATCCGGTAGTTGATCAGGGCGTCGACGAGCGTGTGGGAGCCCGTTTTGCCGGTGTTGGCGTCATCGACATAGGAGGAGCTGACGAAGCGTGTGCCCAGCCCCAGGGTCAGGTCTCCGCGTGAGGCATCACCGGGTATGGTGTAGTCCGCCCATAGTGAAGCCAGATGCTTGGGCACCAGTCCTGGCCGGTTGCCTTCGTTACCCGTCAGTCCGTCCTTTGTGATCTCTGAATCCCAGTATGAGTAGGAGGCGATCAGATTGAATCGATCGCTTATCGCTATCTTGCTTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 285932-287340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015243.1 Halotalea alkalilenta strain IHB B 13600 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 285932 28 100.0 32 ............................ ACCCCGGGAATTGTATCAACAATTGAAAGTTT 285992 28 100.0 32 ............................ GAGTCGGTGAGTGCGCGCGATGAGTCGAATAC 286052 28 100.0 32 ............................ GTCATGCTTCAGGCGTGTTTGCTCGAGCGCAT 286112 28 100.0 32 ............................ TTGGGGTGCCGGGCGCCGAGACGGGCGCTTGC 286172 28 100.0 32 ............................ GAGAGAGCCGGATCGGTGCGATCCGGTATAGA 286232 28 100.0 32 ............................ ATGCCTCTCGACCAGCACTTTCCATGGCACCT 286292 28 100.0 32 ............................ TAATCTCGGCATGATAGACCCCTCAAACGAAG 286352 28 100.0 32 ............................ AGGATTCATAGCGCGTGTAGAGCGGCTCGCCA 286412 28 100.0 32 ............................ ATGAACTGCATGCGATCGAGACGAGTGGAGAC 286472 28 100.0 32 ............................ AGCGGGCAAATGCACTGGCCGCTCGCTGGAAA 286532 28 100.0 33 ............................ GGCAGCACCTCAGGTGGCCGAGGCTGGTTTTTT 286593 28 100.0 32 ............................ AGCGCCATCACGAATACCCGCGTGATCGGGTT 286653 28 100.0 32 ............................ GAGCCCCACGACTCGGCGATGCGTTCGATCCG 286713 28 100.0 32 ............................ ATGCTCGATGCCCAAGCTACCACCTGGTCGCG 286773 28 100.0 32 ............................ AGACATGTTGATGCGTCGCTCGTACCACGCCG 286833 28 100.0 32 ............................ TCGACGACGCCCGTTAGCGTCACGCTCTTGCC 286893 28 100.0 32 ............................ GGAGGATTAATCGGCGCTCATTAAAAATGCAT 286953 28 100.0 32 ............................ ATGAACGCGCTTTTCTCGTCGCCCGCCTTGCG 287013 28 100.0 32 ............................ GGAGGATTAATCGGCGCTCATTAAAAATGCAT 287073 28 100.0 32 ............................ ATGAACGCGCTTTTCTCGTCGCCCGCCTTGCG 287133 28 100.0 32 ............................ AGCATGTTCGCCCTGGACCACGGCCTCAACCG 287193 28 100.0 32 ............................ GAGCGCACCCCGGATCTCGCGCGATTCGTACC 287253 28 96.4 32 .......A.................... AGCCGCGGTGTCGCAAAGCGCACGACGGCGTA 287313 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTCGCTGCCGCATAGGTAGCTCAGAAA # Left flank : CGGATGTGGCTGAAGACCTCGATCGCTTGGGGCCTGCATCAGCCAACCGGATTCTCGATGTCATCGAAGAGCGCATCAGGGATGGAGAGCCGGACAAGCTGGGTAAACCCCTCCGCGGGCTGCTCGCCGGCTGCCGCCGCATCAGAACCGGCAATACCAGGATCATCTATCGGATTAATGGAGAAGCCGTCCAGGTGCTGATCGTCGCGGTTGGAGCGAGGCGAGAAGAGGAGGTATATGCATTAGCCGAGAGGCGTGTATAGGCAACCGAAGGCGCGTTGGCCCATGGCTCAATATGCCTGGGGTCGTGGCGGGGTCCCGATCGAACGCGACGATGATCAGCTCGCCGCCTGTTTCACAGGTCCAGCGACCCTCTTTTTGCTGATGTTCCAGGAGTGATTATAAAACAAGGGGTTACGGGGCTTGGATCAGAAAGAGTGATATCGGGAATTTGTCCGCATAAGGCATATAAATCAATCGACTATATGAATTATGCGCTA # Right flank : AGGAGAGGCCGTTTGACACCGTGTCACGCAGACGTTCGCTGCCGTGCGGCAGCTAAAGAGTGATTCGGCGCTGGGCCGAATCACTCGGGTGAGGTTCTTGCGTTCGATCTCGCGGCGTCAGGCTTCGATGCGATTGATCACGCCGAGGCGGGGACTTTGAACCAGCCCCAGCCTCCTTTTCGCAGGGTCTTGAGGCGATAGAGCGCTTCGTCGGCGCGTTTGAGCAGGTCGTGCAGGTCGCGTCCGTCCTGGGGGTAGAGGCTTGCGCCGATGCTGGCGCCAAGCGTGATGGAGCGCGCTGCGAGTGCGAATGGCCGTGAGAGTGCTGTCTCGATGCGCCAGCAGAGCTGCTCTACCTGTTCGAGGGTACGTAGATGCGGCAGAAGTACCACGAACTCGTCTCCTCCCAGCCGACATACGAGGCCGCTGATCCCCACGCTGTCGCACAGCCGGCGGGCGACCTCGGTCAGTACTTCGTCGCCTCCATCGTGCCCGAACCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGTAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 300881-299710 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015243.1 Halotalea alkalilenta strain IHB B 13600 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 300880 32 100.0 35 ................................ GTGTCGATCCCTGTGATCAGGCTCGCAGGGCTGGA 300813 32 100.0 36 ................................ GAGATGATCGCGGCAGGGTTGAGCCCGTCGATGAAT 300745 32 100.0 35 ................................ ACGATCACCGGTTCGGACTGCGCCTCGGTCATCGA 300678 32 100.0 33 ................................ CTGAGCGCGACGCATGTACCAGTCCTTGTGCTG 300613 32 100.0 36 ................................ AAGGCTGAACGCCGCCAGGACATCGAGAGCCGCGAG 300545 32 100.0 35 ................................ GCTTTGATGAGCATGTCGACGACGACGAAGTCGCC 300478 32 100.0 35 ................................ TGAATCAGCCCGGTGCCGCTAGACTTGTCCTCGAT 300411 32 100.0 36 ................................ ACAGATAGCCGATCGCCTCGGGCGGTCGGTGAAGGG 300343 32 100.0 35 ................................ GCTCGAGCGCTGACTGATCTGCTGGCCTAGGAGGG 300276 32 100.0 33 ................................ CCAGTATTGCCACGATCTCGGCGTGACTTTGCC 300211 32 100.0 33 ................................ TCGTGAATCCAGCAGCGGACAAATGCCGTGGGG 300146 32 100.0 34 ................................ TGCATGTACTGAGACAGGAAGACGTAGAGGTCGC 300080 32 100.0 34 ................................ TTCTCCTATGCGGCATCCAACGACGCCATGGCAT T [300071] 300013 32 100.0 36 ................................ ACCTCGGCGAGCGTGGTGTAGGGAGAGGCTATCGCT T [300004] 299944 32 100.0 35 ................................ GTACCTCCCCGGCCCGGGTCGAAGGGCTACGGGTA T [299935] 299876 32 100.0 34 ................................ ATGTGGTGGTTGCCTGCGGGTATGTCGCTTGGGT T [299867] 299809 32 100.0 34 ................................ TTGGGAGTGCAATGGTTCGAATGGCGCATTGACC T [299800] 299742 32 78.1 0 ..............CA...TAT..G......A | T [299732] ========== ====== ====== ====== ================================ ==================================== ================== 18 32 98.8 35 GTCGCGGCCCGCACGGCCGCGCGGATAGAAAC # Left flank : ATCCATGAGGAGGCCAAGCAATGATGGTACTGGTCAGTTACGATGTGAGCACTTCGTCCGACGGTGGAGAAGGGCGCTTGCGCCGTGTGGCGAAAGCCTGCCGTGATTTGGGGCAGCGCGTACAGTTCTCTGTATTCGAGATCGAAGTCGAGCCTGATCAGTGGGTGCGCCTTCGCCAGCGGTTGATCGAGTTGATCGATGATGAAGTCGATAGCCTGCGTTTCTATTTCCTGGGCAGGAATTGGAAGAATCGGATCGAGCATATCGGTGCGAAACCTTCACTGGATATGAACGGCCCTCTTGTCTTCTGATTTCCCGTAGCTCTGCGAACCTTAAGTGTCGTGGTTTTTGCCGGTGGGTTCGCAGTTCTTTAACAATTTGTTTTCTTTGCACTTTTTTCTCATATACGGGGGGAATTAAAAAATTAACTCTCATCCTTGGAGAGTTTCGCTGTCCCAAAAGTATTTCACTTTCATTATCAATATGTTATGAGAGTGGGG # Right flank : GAACAGGCCCACTTCGCCTGCTCCAGCGTTGTCGCTGTTCAGAAGATTTTTCATTAGCAGCGTATTTGGAACTTCGAGAGGCCGTCGAAATTGGCATTGGCGATGGCGAAGAAGTTCACCCTGTGGTCGAGGCAGACATCGATCTGGCGCCTGGCAGCGGACAGGTCGGCGCCAAGTCGTGCCGAACTCTCCCTTGCCACTGAAGGTCATGGTGCCGAGGGTCCGCTCCGGTACCCATAGTCTCGAAGACTTAGAGAATGAAGGCATGCTTGTCTGGATCGCGCAGGCAACGCCTCACCCGACTATCGCTTTTTTCATTTGGGCAGCGACATCGGCGATCTCGCCACGGATGTCGCTGCGGCGCTGCGCGTCCAGTCGAGCGACGGGAATCGAGGTGCTGACGGCGATGCTTTTTCCGCTGGGGGTCTGGCCGACATAGGCGGCGAAACAGCAGAGCCCAGCGGTTACCTCTTCCTGCTCCGTGGCCACTCCGGATCTTC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGGCCCGCACGGCCGCGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //