Array 1 176444-176941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYHA010000003.1 Lactiplantibacillus pentosus strain 3.2.37 assembly_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 176444 28 96.4 33 ..........T................. TTAGTGGCGTTGTTGAGCGATTGCGTTAGTTGG 176505 28 100.0 33 ............................ TGTGATGCTGCAAGGCTGGCGGTTCAAGTTCCA 176566 28 100.0 33 ............................ CTTCAATCTGTGGACGTTAACGATCGCCCAATT 176627 28 100.0 33 ............................ TAAGGAGGTATTCCAGATGTACGCAGTTAAGAC 176688 28 92.9 137 ..T..........G.............. TATTACTGCGTCCCGATGGCAAATTATTGAATTTATTTGGATCATACCTTATAGTCAAAACACTAGCACTTCGACAAGTTGACCCAGAAAAGTCATTTTTATATTTTGGATTGTTGATTTACCGGCATTTGATTAGT 176853 28 89.3 33 ..A.........C..A............ TCCAATGTGACTAACTGAAATTTCTACGCTAGT 176914 28 78.6 0 ..A.......T.C..A..........TT | ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 7 28 93.9 50 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : TATTAGACTGCCGGGGTATTTATAATTCATTGCGCACTAATTTTCGCCACAACGCTAGTAGCAGGAAAACTATTGAAAATCGCTTATCCGGCGTGAAATATATGGCTAGTTTGATAAGCTGGTATATATCCATCTTTAAAATCAGAGTAATACCGGATGCTCCCCCCAAAAAATATTCGTTAGTTATTCATTACTACAAACGCTCAATCAGTAAGACCGATTAATTTGCGGGTAGCAAGCTATTGGATGGATTTTTTAAAATTCCGGATATAGATCAAACATTCACGCCTATTAAACGTTGTTATAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACAGATTTGTTGCGTTTCATTGCAGACATTCATCTTGCTTGAAATCCCAGTTTCTTGTATAGTCCTAGTTGTAGATGTCAATTCAGCAAGTTGATGTAAATTTTGGATTTACTGATTTCATATTGTTGATATGACGGGATTTGTTTAGT # Right flank : TTTATACAGTTTTTAGGAGGGCAAGGATAATGGTTGAAATTATCGCGCATGTTTTAATACCAACCAATCGAGGATTTTTGATTTTACAGCGTACCCGAAAAGAATACGGCAATAAAAATGTATACCCTGGATACTGGGATATTCCTGGTGGTTTAGCCATCAATAATGAGATTCCAAGAGAAACAGCAATTCGGGAATGTATGGAAGAAACTGGGTTAAAGGTAAAAATTAGCAGAATTATCTGGGAAGATTCAGTCCTTGATAAGGACAAAAATCACGTGTTTACAAGATTAGTTTATCTGGCACATGAGATATCAGCTGATCAGAAAATTTATCTAAATCGAGAAGAACATTCTGAATTTGTTTTTGTAAATTCACGGCAAATTTTGAGTAAAAGAAAAGTCATACCATATTTAGAGAAAGTCTTGTTACAGTTTCTATAGATAATGAGAACTGTACCGCGTGACCTTTACGCTTGAAAGTGCAAAGAAAGAATTTGT # Questionable array : NO Score: 4.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-1.77, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15622-16252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYHA010000037.1 Lactiplantibacillus pentosus strain 3.2.37 assembly_contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15622 36 100.0 30 .................................... CGGAGTGGCCTTTTTATTTATTTGATTGCA 15688 36 100.0 30 .................................... TGATGTTTTAGGCGACTTTACCGTGTATAA 15754 36 100.0 29 .................................... AAGGGCTTGTTTTCCAAGACGTCAGGCTT 15819 36 100.0 30 .................................... CAGTCATTTTCGTTTGAGCAACGCGAATTC 15885 36 100.0 30 .................................... CAGTCATTTTCGTTTGAGCAACGCGAATTC 15951 36 100.0 30 .................................... TAAATAAGTGTTGACAAAGGATATCAGAAA 16017 36 100.0 30 .................................... GTCGGAGGCGTACAAGAAGCGTGTGGCTGG 16083 36 97.2 30 ..........A......................... TGGTGTTGAATTACAAGGTGCTGGTAAGTA 16149 36 100.0 30 .................................... CAAGTTTAACCATGAAAGTATTTCTGATGA 16215 35 88.9 0 ........................-...G..T..T. | GGC [16235] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.6 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : TAGTGATGGGGTGAGTGAAAAGCATAGTTCCGGGATTTACAAGCAACTTGAAGCTGTATTGACTGATGATCAGCGTAAATCCATAACTGACATGAACAGTCAGTTATATACCCTTGTTCAGCAATGCTTATTCATGATTGATCTACCCTTGGAAGTCACTTATGATTGGGATTTAAAGAAGTTGTTCAAGTACTGCAAAATTCATTTTAATGCTGATACCATGCAGAACCCATATGCTATAATTGAATCAATTATTAAAATCCATTTAGAGTGTGGACTCAAGTCTGCGGTTGGATTAACTAATGTCGCTCATTATCTTAATCAGCAGCAAATAGCTGACTTATCCAAGCTCACAATTTCCACGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACTAATTGCGACTTCTACTACATTGACGAGGACTTTGTTGATTGGCATTCATAGCACATTAAAATCCGGTTATAAAAAATCG # Right flank : CTAGTGGCCGTTTTTAATTTCGTGATGTAACTAGATTTATAGATGTTCATTAGGAGTTTCCAAATTAGACCCTGTAACAGGAATAATAGAAAATGGCAGTGACACAACTTAACGGTAACGCCGAAAGCAGGTAAGGAAAATGAGTTTAAGAGCCAGCAAACGAAAGTCCGGTTTGCGGCTAGTTTGTCAAAGGATAAGACCGATAGTGAGTTAACTAAGAAAGATAACGATTATACCTGGTCAAATAAGATGACTAAGGGCGATAAACCATCAAATGATGTGGCTTATCATTCAGAAAAGGACCCGGACTTGATTGTGAAAAAGGTTGAAACACAAGATGGTAAGTTAGCTGACAACGTGGCCAATGCTAATATTATCAACGCCAAAACCGTTCCTTTCAACATCTTTAATCAGTATAACAATTTAGGTGAAACCCAATATATGACTGATACCGACGGATAAGGCCGATAGTGAGTTAACTAAGCAAGGTCAGACTTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 56856-56231 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYHA010000007.1 Lactiplantibacillus pentosus strain 3.2.37 assembly_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56855 36 100.0 30 .................................... GTGTATAACGTTTCAGATTAAGCTACCACT 56789 36 100.0 30 .................................... GATCTAAGTCATGTCGCGGGGTGGTTTTTC 56723 36 100.0 30 .................................... ATTTACAATTGTAATCAGGGTACGCGCCGT 56657 36 100.0 30 .................................... TGGCGCTGAAGCTGCGGAACTGGTTCACGG 56591 36 100.0 30 .................................... TAATTATTTGCAAAGTGGCTGGTGTAGACC 56525 36 100.0 30 .................................... TTTCCCGTTCAACATAGAAGTGTAAAGTTT 56459 36 100.0 30 .................................... CCTTGCTGACGGTAAACAGCGCACCAGATA 56393 36 100.0 30 .................................... TTTACCTGCCGTATACGCCTGATACTCCAT 56327 36 94.4 25 .......................G..A......... AGGATCGTTTCGACCTGTCATCCGG 56266 36 72.2 0 ....C.G.C...G.....T.T..G...T.G.....T | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 96.7 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTAAACCGCTTGTTTATGAAGAAGATACAGACCCAGATTATCAAGTTAATGGCCGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGAGCCATGATTGCCAAAGTAATGGAAGCCAGTTTTCTATTGGATCTGCCATTAGATGTAGAGGAAGCACCAGGATTGGATCAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAGCTAGGACTCAAGCAATGCCCTGTAATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGACATCACGGTTATTATCATTGAATACTCAGAAACGAATCGGATGGAAAAGTTCAAGAATTGCTGTTATTATTATGTTGACGAGAATTTAGCAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : AACCCCCGTGTTACCGTACATCTTGAATAGTAGTCACTCCCCCTCAACCCCAGGCCCACCAAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTCACAATCAGAACGACGATCCCGCAGACAATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTCGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACGGGGTGGTCGTTTCGCAAGTTGAAGAGGTAGAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGGTAAACCAAGTGCGGTCAAGTAGTCGTAGGCGAAGATTCCGAGTCCTGAAATCAGGAAGGAAA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 32206-32781 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYHA010000033.1 Lactiplantibacillus pentosus strain 3.2.37 assembly_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 32206 28 100.0 33 ............................ CATTGGGCAGTTCGCTGGTTTAACATCTCAATA 32267 28 100.0 32 ............................ CAATATGATAAGGTCGACAACTACCGCCACGT 32327 27 96.4 33 .....................-...... TGACTGATGTACGAGGTATCAAGCGAATTGTTA 32387 28 100.0 33 ............................ CTTGTCCAATCAATAAACCTATCGTATCAGTTT 32448 28 100.0 33 ............................ TGAGTGACGGTAAATTAAACCGCGCAACTATCA 32509 28 100.0 33 ............................ TATCAGCGCTAACTAATGCAAACCGCTGCTTGG 32570 28 100.0 33 ............................ TGTAAGGGTCGTCAGTTTGTGAATAATCTATCA 32631 28 100.0 34 ............................ CCAAATTTCGCCAACCATTGCGACGATTGCTCGC 32693 28 78.6 33 ..A.C..........A..A..A.T.... TGACATTTATTTCATTGCACAAGATTCGAGAAT 32754 28 78.6 0 .....T....C..G..TA........T. | ========== ====== ====== ====== ============================ ================================== ================== 10 28 95.4 33 CTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : AATCGCCTGCTACAACAAGTCGGCGCACAAGTTGTGGCCCAGACGGCGATTCTGGCAGAAGGTGCAGCTGGCACACGAACAGACATTGAATTTTTGGCTAAATTGCCACTGTTTGATGGAAATAGCTCAGAATAATATAACTAGTAGTAGCGAACCGCGCCGCAGAAACAGATTTAACGGTAATTTTGTAGCCATTTTTGGCTTTATCGGTATTGTATGACCATTTGGACCGGTTAATTATAAATTCGTTTATACGGCAATTTTGAGCCGAATTCGTGCGATTCGTTAAATCTTGAGAAGCGATCATTTTTCAATGGCAATGCTAATTCAACTAAAATAATAATCACGCATACTTTCATGGATGGTATTTTAGACAATTGACCGTCATCGACTAATGAATCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAACCTCAATTTTGCGATTTTGGATTGTTGATTTGACGGGATTTGTTTAGT # Right flank : CTAAGATGGAAAAAGTGCTTCATATCCTATAGTTGTTCCCCGGGCATGGGGGTAATCCCTAAAAGCCCGCGCTATTAACGAAAACATTACCGGCTCTGTTCCGATACTTCATAAAGATTCTATCAACTCCACTTGACGGGGAGCCCGATTACCCCTGGTCGCCTCACCTCTCACAGTCATTCGCAAACTCGGCGCAAGGTAATTTAGAATCCAGAGCAAAAAAAAACGCCATATCCGAAGATATGACGTTTTTTTAAGTATCGAAAGCTATTCAAGATAGCTTATTGATACCGGCGATCGGGGTCGAACCGATACTCCCTCAACGGGAACTGGATTTTGAGTCCAGCGCGTCTGCCAATTCCGCCACGCCGGCAAAATAAAATGGGTGAAACTTACTGATCAGGATTATAACCTTTTCAGGAAAGGCGGTAACCGGATTTGAACCGGTGATGAAGGTTTTGCAGACCTCTGCCTTACCACTTGGCTATACCGCCATCATT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //