Array 1 1-248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDE010000105.1 Flavobacterium psychrophilum strain 96236 contig00105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 1 41 100.0 28 ......................................... ATCTGCAAAAGCCTCATCTCCAATAGTA 70 41 100.0 28 ......................................... CCTGAGAAAAGCACCATGTTCAATATCA 139 41 97.6 28 ...........................A............. GCCAAAAAAAGCAAAATTTTCAATAGCA 208 41 82.9 0 .................A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 95.1 28 GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : ATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 293-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDE010000111.1 Flavobacterium psychrophilum strain 96236 contig00111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 292 41 100.0 28 ......................................... CCGGCAAAAGCACCTCGATTAATAGTAA 223 41 100.0 28 ......................................... CTGAAAAAAGCACTATTTTTAATATCAG 154 41 100.0 28 ......................................... TTGAAAAAAGTACCTTCCTTAATAGTAG 85 41 92.7 0 .A....................A.................G | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 98.2 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : | # Right flank : GCCTCCAAAAACATAATCTCCAATAGAAGTCACAGAATTAGGAAT # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 116-1904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDE010000030.1 Flavobacterium psychrophilum strain 96236 contig00030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 116 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 191 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 267 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 343 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 419 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 495 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 571 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 647 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 722 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 798 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 874 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 950 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 1026 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1101 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1177 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1253 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1328 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1404 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1479 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1555 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1631 46 100.0 30 .............................................. GTTAAATACCGCAATGACCGCAAACCCTAT 1707 46 100.0 30 .............................................. CGCCAAAATTAAAGGAAACGACAAAGGCGA 1783 46 100.0 30 .............................................. GCAAAGATTTTGCCAATTGATTTGACCAGC 1859 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 24 46 98.6 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1469-1927 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDE010000046.1 Flavobacterium psychrophilum strain 96236 contig00046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 1469 42 100.0 27 .......................................... ATTGAAAAAAGCATTCTCTCGAATAGT 1538 42 100.0 27 .......................................... ACCGGAAAAAGCACCTCGATTAATAGT 1607 42 97.6 27 .A........................................ ACTGAAAAAAGCACTATTTTCAATATC 1676 42 100.0 27 .......................................... GCGTGCAAAAGACCCATCTCCAATAGA 1745 42 95.2 27 .......................T....A............. GCCTGCAAAAGACCCTTTTCCGATAGT 1814 42 97.6 27 ................................G......... TCTTTCAAAAGCAGCATCTCCGATAGA 1883 42 81.0 0 T..A..G.T......G.......T..........TT...... | TTG [1892] ========== ====== ====== ====== ========================================== =========================== ================== 7 42 95.9 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : AAAGGAATTAAAATGACAAATAATAATTTTTTCATGTTTTTTGTTTTTAATTATTGTATAATAATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACATTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAACGGCTTGAGTACCAGTAGGAACATTTAAAGCACAGTTTGACTGAGTAACATTACCGAAGACATCTGCATTAATAGCTAAAGGCATTGTAATGTAACATTTTACTGATGTTAAACCAGAACAATCTGCAAAAGCCTCATCTCCAATAGT # Right flank : AAAGCGCAAAAGCATTCTTTCCGATAGATCTAACGAAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGAAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAACAGTATATTTTATACCATTTGCTGTAAAATCTTGCGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTCTCATGTTTTTTGTTTTTAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGTAAGGCTATGTTTAAAATTTCTGAA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 154-678 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDE010000063.1 Flavobacterium psychrophilum strain 96236 contig00063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 154 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 223 42 97.6 27 ............................A............. ACCTGAAAAAACACCCCTTCTAATAGT 292 42 92.9 27 ...T...................T....A............. GCCTCCAAAAGACCCTTCTCCGATAGT 361 42 100.0 27 .......................................... CTCTGCAAAAGACCCATCTCCAATAGT 430 42 100.0 27 .......................................... ACTGACAAAAGCACTATTTTCAATATC 499 42 100.0 27 .......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 568 42 97.6 27 ............................A............. GCCTACAAAAGCATACCTTCCAATAGA 637 42 81.0 0 ...TG.............A.....C..........G.CTG.. | ========== ====== ====== ====== ========================================== =========================== ================== 8 42 96.1 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : ATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTTCTTAAACTGCTACAGTCTGCAAAAGCATCCTTTCCAATAGCA # Right flank : ATTATCAAAAGCGGATTCTCCAATATCAGTCACGGCGTAGTTTTCTGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAATAGTATAATTTATACGGTTTGCTGTAAAATCTTGTGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTTTCATGTTTTTAATTAAAATATTATGTGGTTTACAAAAGTAAGCTAGATTTAGAATAAATACAAATAATACTTTGTTTTTTTGAGATTGGTCTTTAAGTAGGTGTTGTTTCTATATGCCTGCAATTGTCTG # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AGTCACAGAATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1-593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDE010000076.1 Flavobacterium psychrophilum strain 96236 contig00076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 1 41 100.0 28 ......................................... TCTGCAAAAGCATTCTCTCGAATAGTAG 70 41 100.0 28 ......................................... CTGAAAAAAGCACCTCGATTAATAGTAA 139 41 100.0 28 ......................................... CTGAAAAAAGCACCATTTTCAATATCAG 208 41 97.6 28 ..........................A.............. GCTGAAAAAACACCCCCTCTAATAGTAG 277 41 87.8 28 .T...................T....A........T....G CCTGCAAAAGACCCTTCTCCGATAGTAG 346 41 97.6 28 ................G........................ TTGAAAAAAGCCTCATCTCCAATAGAGG 415 41 92.7 28 ................G.........A.........T.... CCTGAAAAAGCCTCATCTCCAATAGAGG 484 41 87.8 28 .............G..G.....G.........T...G.... TCGGAAAAAGTATAATTTCCAATAGTAG 553 41 80.5 0 .......G.....G..G...............TT.TTG... | ========== ====== ====== ====== ========================================= ============================ ================== 9 41 93.8 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : | # Right flank : TGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGTTACTATTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAACAGTATATTTTATACGG # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 405-89 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDE010000095.1 Flavobacterium psychrophilum strain 96236 contig00095, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================== ============================= ================== 404 40 100.0 29 ........................................ ACCGGCAAAAGCACCTCGATTAATAGTAA 335 40 100.0 29 ........................................ ATTGAAAAAAGCCTCATCTCCAATAGAGG 266 40 97.5 29 ......................A................. GCCTCCAAAAACATAATTTCCAATAGAGG 197 40 87.5 29 .............G..G.....G.........T...G... ATCGGAAAAAGTATAATTTCCAATAGTAG 128 40 77.5 0 .......G.....G..G.....C.........TT.TTG.. | ========== ====== ====== ====== ======================================== ============================= ================== 5 40 92.5 29 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //