Array 1 17-3822 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMPC01000055.1 Klebsiella pneumoniae strain CVUAS 5578.2 NODE_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 76 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 137 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 198 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 259 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 320 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 381 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 442 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 503 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 564 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 625 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 686 29 96.6 32 ........T.................... GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 747 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 808 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 869 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 930 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 991 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 1052 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 1113 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 1174 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 1235 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 1296 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 1357 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 1418 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 1479 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 1540 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 1601 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 1662 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 1723 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 1784 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 1845 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 1906 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 1967 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 2028 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 2089 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 2150 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 2211 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 2272 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 2333 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 2394 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 2455 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 2516 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 2577 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 2638 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 2699 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 2760 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 2821 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 2882 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 2943 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 3004 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 3065 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 3126 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 3187 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 3248 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 3309 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 3370 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 3431 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 3492 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 3553 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 3614 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 3675 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 3736 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 3794 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 63 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGTAATATATCTTTAG # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //