Array 1 2420-2206 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBD01000018.1 Nocardiopsis alkaliphila YIM 80379 contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 2419 30 93.3 32 ............................AG CCGTGCGTGCGATGGTCACCGACCTATCCGAT 2357 30 100.0 31 .............................. CTGGGAGACGACGTAGTCGTCGGGCACCCCG 2296 30 100.0 31 .............................. GTCCTTGGGGTCGGTGAGCTTGCCCGCAGCA 2235 30 93.3 0 ............................CG | ========== ====== ====== ====== ============================== ================================ ================== 4 30 96.7 32 ATGAGCCCCGCGCACGCGGGGATGGACCGC # Left flank : TGAAGCCCTGCCCGATACCGAACCGGTATCGCCCGACCATTGTGGGAACCGTTCCTGTCACCAGCAGCGCAGGCACGTCATCGTCTTCGATCCGACCACCCAAACCCACCAGGACCTGGGGCCATGCCCACGATGCCACCCCGACCACACTCGGGTGATCGCCGGGTGAACCCCGAAGGTGGAAACACGGAGCGTGTCAATGTCCGGGGTGTCCGCTTACAGGTGTTCTGTGCTCGCTCATCGGTATGCCTCACCTGTCACGACCAGTGGACCCGAAAACAGACGAAGCTCAGAACCGGCCGTCCGCGCGCTGCACCAAGAATGGCTGGAACCGGCCAGGCTTCCTTACTTCTCTACCGGAATCGGGTATCGCGTGGAAGGGTGGTGCCCGGCCTTACGGTTCCACCGAGGGGAGAGGCCTCCGTATGATCGGGGTGTCCAAGCCTTGAGGCAAGTGATAACGCGAAAGTAACGACCCGCGTTGTCGCAGGTCATTAACT # Right flank : GGGCCGGGCAGGCCGGACCTGTCGGCGTGGGCGGCTCAGGACCCCACGACCGCCCGATCGGAGTCACCGCGCAGGACACAGAACCCGTTGCCTTCCGGGTCGGCGAGGACCACCCATCCCGACCCATCGGGGTTTCGATGGTCCTCGACGAAGACGGCACCGATCCCCAACAGCCGTTCCACCTCCTGCTCGCGCGAGGTGTCGGGCCGCAGACACGGGTGGATCCGGTTCCTGGTCTGCTTGGCTTCGGGCACCTGGTCGAAGTGCGGCACGGGTCCCTGTGCCAACATCACCTGCGGTCTCGGGCGCACCCGGTCCGGCCTGCGGATGCAACGGGCGGCCCGTCACCCGGCTCCAGAACCGGGCCGGTCGGTAGGCGTCCGCGTAGCCGATCGCTATGTTCTGCAATACCGAGATCCTGCCGCTGCCGCGCGCCGAACGTCATGGAATTCGGCTAGACCCGGCGGCCCATGACCAGGGGCCGCTCCTCGGGTTCCTCC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAGCCCCGCGCACGCGGGGATGGACCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12247-12765 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBD01000025.1 Nocardiopsis alkaliphila YIM 80379 contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 12247 30 96.7 32 .............................T TACACCCCCTAGAGCATCGCTATCTGCGAGAA 12309 30 93.3 31 ............................TC GGTTGAGTTAGAGTTTGCATCTAATTCGTTT 12370 30 100.0 31 .............................. GTGCCGTCTTGGCCGGGCAGGTCGAGGTCTC 12431 30 100.0 31 .............................. ATGACGGCGAACCCAGGGCGTTCCGGGGTGG 12492 30 96.7 31 ............................T. GACCGAGCATCGACTTCCGAGGAGACGGCGT 12553 30 96.7 31 .............................C GATCGCCAACTCAGCACTTCTGCGCACGTTA 12614 30 100.0 31 .............................. TTTAGGAGTAGGTCGGCTCCTCGAACAGCTC 12675 30 96.7 31 .............................T CGATGAGGGTGAAGCCGTTGTAGCTGTCGTC 12736 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ================================ ================== 9 30 97.4 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CCCATGTCGCACCCTATCCCCGCGCCCCGCCGCCCGCAGGACCTTCGCTCGAACAGCCCCTATCGCCCTCTCCCCGCTTCGGGCCCGACCTGCGCCTTCTGCACTCACCGCACCTGTCGCGCCTATCGGGCACAACACCTTCCTCGTCTGGGCGGTCACCGCACCGAGTTCGCTCGCGAGCACCGCCAGGCCGCACGACTTCAGGCCCATCATCCGCGCTCGATCATCTGGTTCGGAGAGGCCACACAGTCGTTCTGGGTGGCCTCAGCCTCGGGACTGGTCGAAGCCGAAACCATCGATGCGGTGCTCACCTACCTGTGGACCCATGCGCAGCGGATCATCTCTCGCCGTTGAGCGGGCTCTTTCCTCCTGGTGGCCCCGGTGTGGTTTGCTCTAGGCTCAAACGAAACCGCGAACCTGATGGTGTGTTCCTTTTGTCCGTTTCTCAACAAGTTGCAAATTTGGACCCCAAGCGCGAATAGACTCGCAGGTCAGGGAGA # Right flank : ACCGCCTTGAACCGGGCGCCGTCAGTCGACCCTGGCCGGGACGGGGCAGGAGTTCGCGGTACGCAGTCGTGACCACAACGCCCAGGACAGAAAGACCATCCCGGCGACCGCGAGCACCGGTTGCAGCGGAGCGAACCAGGCCATGGCTCCACTGGTACCCAGCGCCAACAGGACGAGCTTGTTGCAGACCGGGCAGCCGATCGCGAACCAGGCCAGGGCCGCGCCCACCATGCTCCTTCCTCCATCACGGTCGCTGCGCGTTTCCTCGACCGCCGACACACCCCGCACGTAGGTGGCCATGACCAGGCCGGCCAGGATCGAGGTGGCGATCCAGACCGGGTACGACCAGCACGTCGGTTCGATCTCCCGGGTGAACAATCCGTTCGGGATGAGCACGGCCGGCACCCCCAGCAGGAGCAGGGTCGCGATCGTGCCCACCGCCGCCACGCCCCACTGCCGCAATCCCCACGTGCGCATTCGGTGTCTCCCCTCATCTGGCC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGGACCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15758-15362 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBD01000065.1 Nocardiopsis alkaliphila YIM 80379 contig_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 15757 30 100.0 31 .............................. TCAGGCCCCACCCCCTGCGCCGGGGAAGTCA 15696 30 100.0 31 .............................. GTAATGAAATCGACCCCGTGGATGAGGGCCT 15635 30 96.7 31 .............................T TTTCCGTGGACGTGGAGTTCCTCGAAATACC 15574 30 96.7 31 .............................C GGGCCTCCAGGTCACGAACGCCCGCCTGGCC 15513 30 96.7 31 .............................A TGTCACAGGCTCCTTTCCAGCGCGCTCACGG 15452 30 100.0 31 .............................. ACGCCCCGAGGTCCTTCCCGCCCTCCCAGAT 15391 30 86.7 0 .........................TT.TC | ========== ====== ====== ====== ============================== =============================== ================== 7 30 96.7 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : CCGAGCGCTACCACCTCACCGACTTCGTCGGGCCCGAACTGCCCGACGTGCTGGCGCTGGCGGACGTGGTGATCTCCCGCAGCGGTGCCGGAACCATCGCCGAGCTGACCGCCTTGGGGAAGGCGGCGGTGTTCATCCCGTTGGCCTCCTCGGCGGGTAACGAGCAGGCGCACAACGCTCGCCACCTCCAGGAATCGGGAGCGGCGGTGGCCCTGCTGGACGAGGTGACCCCTGAACGTTTGCAGCAGGCGGTGGAGCCGCTGTTGGCCGATCCGGCCACCCGGGCGGCGATCGCGAACAACGCCCGGTCCCACGGTCGTCCCGACGCCGCTGAGCGTCTGGTGGACGTGCTTTTGCGGGCTGCTGGTTGAGCCCCTCCGGGGCCGCCCCGAGCGTGGCGGCCCCGAGGCCCCTTTTGGGGGGAATGTGGCTTGGTGTCCAATTCTCGACAAGTTGCAGATTCGGGCTACCTGACGAGATAGAATCGCAGGTCAACGAGA # Right flank : AAACAAAGGCCCCGATTGCTGTCCTTGAGTTCTAGTAGTCGGGGCCTCATCACTGCCAGGGAGACTTCAGCGCATGTCGCGGTGTGCGGTTCCGAGGAAGGCCTGCCACTCACCAGCGTCGAAGAAGAGGGCGCCGAGTTTGCGGTTCTTAGTGTCCCGGATAGCAGCCTCGGCTGCTCTGTCGGCTAGTTCCACGTATTCTCCGTGCGAGCTGCTGTAACTGGACCTGCGGAAGTTAGTCGGTAGGTGCGCCGCTTCCACGCAGTTGTTGTCGCCTCCGCTATAGCTGGACTTGAACCACTGGATCATCGGTACTCCCTTGCCAACGAGTCGATGCGGTCCATCGTGTCAGATGGTGAAAGCGCGGCCTGGCTCAGGTTCTTGAAGGCTTCTCTGTAGCGGCTGACACTCTCAACACTCTCAAGGTACAAATCGCCCATCATGCCCTCGATATAGACCACATCGGGGTACTGGTCCTCAGGGAACGAGAAGATGGTGAA # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16413-16564 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBD01000044.1 Nocardiopsis alkaliphila YIM 80379 contig_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 16413 30 100.0 31 .............................. CGCAACGGATGATGGTGCTGAACCGCTTGTG 16474 30 93.3 31 .................A...........A CGCGGTCGGCCATCGAACGGTCGAGCAACGT 16535 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== =============================== ================== 3 30 96.7 32 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : GCCAAGGTCACCGAGGACGTTCGCCGTGCCCTGGGGCGCGATCCCGTCCCGATGGCCAAGTTCGTTCGCGAGGCCGTCATCTGAGGCCTTTCGGCCACGGCGGAGCCCCGGACGGTCGAGAGCGCCTCCGGGGCTCGGGTACGGGTCGCGCCGGGTCCTACTTCAGCAGCCGGCGGGCCATGACCATGCGCCGGCTCCGGTTGGTGCCCTCCTAGCTTCGGGTGTTGTGCCCAAGTGGTCCGAGGCGACCTGGGTGGACCCGTGGAGTTCTTGTGATGGCAGGGGAGGGGCCTTCCTTCGGTGCCCGGTGTTTCTCACGGTTGTTCGGCCTTCGACGGAACACCCTCACCGGCTACCCGGATATGTGGTCGAGTACCGAAACGTCTGCGGGTGCGATATCAATACAGGAAGCACGTCGACGCCGGTTGGGGCTTATGTCCGTTTCTCAACAACTTGCAAATTCGAGGGGTTCGGGCGGATAGAAGCCCAGGTCAGCGAGA # Right flank : GTTGCGGTAGGGCCTGCCCGGCTCAAGGCCTTCTCGCTCCAGAAGCTCCCACAACCTGCCGGAGCAGCTTGTTGTGGTCTACGTGCTTACGCCTCCCAGGTCTTGCCGGTGATCCGTTCGTAGACCTCGATGTACCGGGCCCGGGTCGCTTCCACGATCTCATCCGGGATCTCGGGGCCGGGCGGGGTGCGGTCCCAGTCGGTGACCGTGCTGGACCAGTCCCGCACGAACTGCTTGTCGAACGCGTGCTGGGGCCTGCCCGGCTGCCAGTCGTCGGCGGGCCAGAACCGCGAGGAGTCCGAGGTCAGTACTTCGTCGGCGAGTATGAGCGTGCCGTCGGCCGCGCGGCCGAACTCCAGCTTGGTGTCAGCGATGATGATGCCGCGCTCAGCGGCGATCTCAGCGCCGCGCTTGTACACGTCCAGGGTCACCGTGCGCAGGCGGTCGGCGGTCTCCTGGCCGATCTCCTCCACCACGTCCGCGAAGGTGATGAACTCGTC # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 905-514 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANBD01000081.1 Nocardiopsis alkaliphila YIM 80379 contig_81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 904 29 100.0 32 ............................. TCGTCCTACTCTCAGGGCCGCACTGAGAACTG 843 29 100.0 32 ............................. GCCTCCAACCACAGGACGATCCCGTGGATGGG 782 29 100.0 32 ............................. CTGTCGGAGTAGCCGGTGGGTGCGCGGCATGT 721 29 100.0 32 ............................. TCTCGGAGCTTCCGGGACATCGCCGGGTCGCC 660 29 100.0 28 ............................. CGTTCGTGGGCATCGATCAGATGAGCCA 603 29 100.0 32 ............................. ACAAACCGCCCCGGCTTTGATGGTCGGGGCTT 542 29 75.9 0 .....................GGTCGGT. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.6 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GAGAACCAGGGGTCCCGCAGGACACGTGTCGTTGACCTGCCCGCATGAGCACCACGATCCGCCCCTACGCCCCCGAGGACCGCGACGCCGTGGTCGCCTTCTCCCTGAACGCCTGGGAGTCCGCACATGCCTCGCCGGTACGGGTGCTCGGTCCGGAACCCTACCCTGCTCAGTGAGGGCCGGTGGGAACAGCGGGGCCGTGACGCCCACAAGGGCCTGGACGCGGAGCAGGGCCGAGCCGCGACCGCTTCGGCGTGACCGTGGACGGGGTGGACACGCATCGATGGCCGATTCAGCCCGGCCGGGCCTTCGGTTCCTGTGGTGTGGAGTGAGCATCGGGGTGTCACCGCGAGGGTTCGTGGGGGAGAATGCGGAGTGAAGCGAGTGTTCGTCCCCAGGTGCCTGGGGGAGTGCGCGACCGGTGGGCGAGGCCGAGCGGAGCTCTGTCCGCCGGTAGATCTCGCGGAGATAACGGCCCGTGTTTCTGCAGGTCATTAACT # Right flank : GCAATGCCCTGTACCTGGCGTAAGCGTGCAGGTCGCTGTGGCTGTGGTCGGTGAGGACCTGCGGCTGCCCCTCGAGCACTGGATCGGCCGCATCGGGGGAAGGCGAAATCCCGTGTCGTCCCGTGGTTCAGCGCGATATCGCTCTCGACCCCGCGAACGACCTCGCCACGGCTGATGCCCGACCCCACAGCGTGGCTCGTACCGGCGGTGCGCTCTCTGCTCGGTCGATGCCCCGTACCGGCCATCCTTCCGACCCGGCGGTATGCCTTGACGTGGGATTCTCGCATATCGGGACAAAATTTCTCCGAAAACGCTTTGTCGGTGGTGTGGGGGAACGTCTTACTCAGGACGAAAGAACAACGACTCGACGAGGAGACCCATGATGAGCGTCCGCCCCGCTCCCACGACCGCCCGCCGTTGCCTGGGCGAGTCCACCGACCTGGTGAGGCAGTGGGTCCGGGTGCACGACGATGGCTCCGCCGGCCTGTTGCCGGCCGCCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //