Array 1 208732-207464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQDG010000019.1 Myxococcus sp. RHSTA-1-4 NODE_19_length_209054_cov_172.719476, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 208731 36 100.0 40 .................................... ACGGACTGCATGTTGTGAATCACGTCGGCACCTCCTCCAC 208655 36 100.0 35 .................................... GTCTTGAACGGCAAGGCGAAGAAGAAGACGGCGGA 208584 36 100.0 39 .................................... TTCGTGAAGCCAAAGCCGGGCCTCAAGGTGCGAGACCCG 208509 36 100.0 34 .................................... CGGCGTCACGAGTCCCGGTGTGCCGCCACGAGGG 208439 36 100.0 35 .................................... CCGCCGGGGCCAGACGGCAACCCCACGCTGGATGA 208368 36 100.0 35 .................................... AATGGCGGAGGGAGGGGCCTCCGTCGCCGCAACAG 208297 36 100.0 40 .................................... CCGCACGCTATTACGCGCGAGCACGTCAGCCTCTCTCGAA 208221 36 100.0 36 .................................... TCATAGCCGCCTGAGAAATGCGCCCAAAGCACACCA 208149 36 100.0 33 .................................... CTGTTCTGGGCAAGGAAGCGGGTGGGGTGTCTG 208080 36 100.0 37 .................................... GCCCCGAGCGCCTGCTTCTGGCCCTCGAAGGTGCTCA 208007 36 100.0 38 .................................... GCGGACCTGGCGGCGCTCCCCGAGCCGGTACCGCCGCT 207933 36 100.0 37 .................................... AATGAGAGGATCGGCCCACCAACCTTCAGGCCGCGAA 207860 36 100.0 37 .................................... CAGCCTGTGGTGGAAGAGTTTCGGCGCGACGATGCAA 207787 36 100.0 36 .................................... CCGTACGTTTTCGAGGGGCAGAACGTCCGGGTGCTG 207715 36 100.0 36 .................................... ACACCATTCTCGTCCATGTCACCAACGACGGGCTCA 207643 36 100.0 37 .................................... TCCGACAACAAGATGACAAGTCTCGCGGATGAGCTGT 207570 36 100.0 35 .................................... GACGTGCCGGTGGTGGTGTACCAGCGGGACGTGGA 207499 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 18 36 100.0 37 GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : CGCTCCCCGAAGCTATCGCTACCTCTCCTGCCGCCCCGCCCGCCAGGGAGCCTCCTCCATCACCTTGAAAGGGGTGGCGTTGAGCACCACAAAGCCGCGCCTTAGTGCAAGTCACCTAGTGG # Right flank : CGGACAAGGTGCGGCGTGACGCGTGAGCAGTGCGGCGGCCCCCACTTGCGCTGCTCGAAACCTGAGTGAAATCCTACCTGCCGGGAGCTGGACTCTGCGTCTGTCATTGAAACAGGGAATGGCTTTCCTGTCAGGGGGGCGGATGCCAGGGCACATGGAGAACAGGAGTCGCTTCGCTACGGGCGGCTTCCTGTCATGGGACAAGGAAGGGCGCGAGGTGCTGGTGGTGTGCGTGGCGGGGCGCTTCGCGCGTCCGCCCGCCGGGCGCCCCAGCACGCAGCCGCTGCGAGTCAGAGAGGTGCGGCGTCCGCCGCCTCCGGCCGGCACGTACTGGGGCGGGCCGGAGCATTCGAGCCCGCGGATGGAGGGACAGCGGGAGTTCACGTGGCCCGGCACGGGCGTGTACGTGAGCGGGCACGCCTGGGCGCCGGGTGGAAGGCCGGCGCGAGAGGCCGTGGTGGGAGTGAGCGGTGCCGGTGCTCCGGGAGCTGGCGGAGTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 77-4963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQDG010000033.1 Myxococcus sp. RHSTA-1-4 NODE_33_length_123875_cov_170.614412, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 77 36 100.0 36 .................................... GTCCCTCCGAGTCGGTGACGTCGCAGAACACCACTG 149 36 100.0 33 .................................... GGGGGATGCCCGGGTGGCCTCCCTCGTGGAACT 218 36 100.0 34 .................................... TTCTGTCGTACGTGCTGCCCGTCACGAGTTGCGA 288 36 100.0 38 .................................... CTGCGCTGCGGTGCGGACCTGGACGACCTTGGTGATGG 362 36 100.0 34 .................................... AGGTGTCGCCGCGCCTCAGTGGCGCCAACCTGCC 432 36 100.0 38 .................................... TGCCAGCCGGCCCAGGCGCCGATGGCCTGCGCGTCCCG 506 36 100.0 36 .................................... GATGTTCGGCACGGAGATGTACTCGAACATCTTCAG 578 36 100.0 37 .................................... GCGTACCGGGGATGACGCCGTAGTCGGTGCCCTCCTT 651 36 100.0 36 .................................... CTGGACTTCGCGGGGTACTTCCTGTCGCTGTGGGAG 723 36 100.0 35 .................................... CGCACCGGCAGCGGCATCCTCTACCCGTCCTTCTA 794 36 100.0 37 .................................... GTCGTACCTGAATGCGACGACCATGCTGACTCTCCTC 867 36 100.0 34 .................................... GCGCTGCCGTGCGCGCCCAGCACCCACGGGGCGG 937 36 100.0 38 .................................... TTGCCGAAGGCGACGCCGAGCCCATCCACACCGCTGCG 1011 36 100.0 41 .................................... CGTGCTGCTGCATTGCGCGGTCCCATCCGGGGCCTCGGCGG 1088 36 100.0 39 .................................... GAAGACGCCGGCCGTGCCCGCGGGGCGCCACGCCGTCTT 1163 36 100.0 37 .................................... AGTCGTCCAGCGCGGCGCGCATTCGGAGGCAAGAGAA 1236 36 100.0 35 .................................... ACCTCCCGTAGCCGCGTCATAGGCCGCGAGGGCCG 1307 36 100.0 35 .................................... AAGGTCAACATCTACGTCGAGGTTGACGGCAAGGG 1378 36 100.0 36 .................................... GGAGCAGGTCCGCGCCGAGCGCGAGCGCGTGGACGT 1450 36 100.0 34 .................................... AGGGCGCGGCGCTGCTGCCCTACCGCGTGCTCCT 1520 36 100.0 35 .................................... TCCAGGATGGCAAAGTGCTCCACCGTCAGGTCCGG 1591 36 100.0 37 .................................... TCAGCCACGAGGGGGCCCTGCTCGGGACCTCGCTCGG 1664 36 100.0 34 .................................... AGCCGCAACCGACCGCGCTGGACGGCCTCTTCGA 1734 36 100.0 38 .................................... TCGGCCGCACCCCGCCCCACCTTCGCGGCAGGGCGCCG 1808 36 100.0 36 .................................... CGGGCCACCTACCTTGCCAAGTGTACCGAGGCGCTT 1880 36 97.2 37 A................................... TCCGGATTGTAGTCACACCATGCGTCTTTCGTAGGGA 1953 36 100.0 35 .................................... CGCTAGTCACGGTGCTGTTTGCTCTGGCCTTTCTG 2024 36 100.0 34 .................................... TGGAATCGACCCACGACTCGTTGTCGCTGATGTA 2094 36 100.0 37 .................................... CCCTCGAAGGCCAGCTCCAGGAGCCGCAGAAGCCCAA 2167 36 100.0 34 .................................... TGACCGTGGATAAGGTCTCCGTGAGTAAGGTCTA 2237 36 100.0 37 .................................... ACTGGCACGGCGCCGCCAAAGAGGTCTTCTCCGTCGA 2310 36 100.0 34 .................................... GCACCGCTGGCCGTGTCGATGACGTGCCCAGACT 2380 36 100.0 37 .................................... TGACGGCGTCCCGCCATGGCGAACCCTCCCCGGAGCA 2453 36 100.0 37 .................................... TCTTGCCGTCCTTCTCGGGGTTGTCGTTGCTGCCGCT 2526 36 100.0 33 .................................... CAGCGTCATGCCGGACTGCTGGTAGAACTGGAC 2595 36 100.0 32 .................................... ACGGGGGCGAGTAGCTTCCGGAAGGCATCAAT 2663 36 97.2 37 ...A................................ GGGGACGAGATGACGCGCATGTTCGTGCTCACCAGCG 2736 36 100.0 39 .................................... GACGGGCGGCTGTGGTTCACCAACATCGGCGGCGCGATT 2811 36 100.0 39 .................................... CGGGACCATGGCCTGTTGCGTCTGCGCCTGAATCCGCTG 2886 36 100.0 38 .................................... GGCAAGCACCGGCCTTCGCCACTTCCGCCGGTTGACGA 2960 36 100.0 37 .................................... ACAACCTCCCCAGCGCCACGCCCTTCAGCGCCGGCCT 3033 36 100.0 38 .................................... TGGTAGGACTCGCCCTTGCCCAGCAGCAGCAACCCCAA 3107 36 100.0 33 .................................... GGTGACGGGCGGGACGGGCTTCTTGAACCCCGA 3176 36 100.0 40 .................................... CGCGGGCTGTCAACCTCGTGCCCAGCGAGCTTCCACAAGA 3252 36 100.0 36 .................................... GGTGGTGGTGCGCGGGGTGGAGGGCATCCTCCAGGA 3324 36 100.0 39 .................................... GCTCGAGGTGGTGCGCGACCTGTCGCTCATCGCCAACAG 3399 36 100.0 36 .................................... AAGGTGCACGACGCTGCTTCTGACGCTGGAAACGGG 3471 36 100.0 36 .................................... TAAGTCCGCCGCCGCAGCCATAGCCATCCTCTCCCC 3543 36 100.0 35 .................................... TTCATCGACCGAGCAAGAGATGGTCACGTTACCCG 3614 36 100.0 38 .................................... CCAGCATGGCCAGCTTCCCAGACAGACGTTCAACTTCT 3688 36 100.0 37 .................................... ACGGCGTCACGCCGTTCCTGTTCGCGCAGCAGCTCAC 3761 36 100.0 38 .................................... ACCACAGACACGAAAATCTCGTGAATGCCGCCGCTTGA 3835 36 100.0 40 .................................... GGCGCGAGCAGGTCAAGGTGACGGACGAGCGGGAGTTCTC 3911 36 100.0 34 .................................... TCGGCATGAAGAACGGCCACGCCTACCGCTACTT 3981 36 100.0 38 .................................... AGAAACCACACCGAACGCTCACCCGCGTTGGCTTTGGC 4055 36 100.0 37 .................................... CGAGTACCCTCATGGCTTTCCCCAACGTGTCGGACAT 4128 36 100.0 38 .................................... ATCACCAGCGGCAACGACCTCTTCCCGGTGGAGCTCAA 4202 36 100.0 36 .................................... CGCCACTGCCGCCCACACCAAGCCCATCCCCGGCGG 4274 36 100.0 37 .................................... TGCGCGCGCACCTTCTCCACCAGCCCTGAGTAGACTT 4347 36 100.0 35 .................................... GCGTCATCGCGTCCGTTTCGGACCTGGTTCCTGTG 4418 36 100.0 37 .................................... TGGAGATGGCCGAGGCGCGGCCGGACCGCAGCTACTG 4491 36 100.0 37 .................................... GCCGCCCTCGCGGACTCCCTCAACGTGGAGGTGTAGG 4564 36 100.0 37 .................................... ACCCGTTTAAACCGGATAAACACACGCCCCTTCTCAC 4637 36 100.0 37 .................................... ACGGCGTGAGCCCGAATCCGCCGTCGCTCACCGGCCG 4710 36 100.0 40 .................................... GCTTCGGCCCGCGCGGGTGCCTCGCGGTGAAGCGCCACGC 4786 36 100.0 36 .................................... AGAGGAGGCGCCGCCAGGGGAAGTGGAGAGGGATCA 4858 36 100.0 34 .................................... CAAACTGTACAAGAGTTGCGGTCGTCGGTAACAC 4928 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 68 36 99.9 36 GTGCTCAACGCCTTCCGGCATCACGGCGAGCGGGAC # Left flank : TGGTCTCGCGGCCCCAACATGCCTCCCTACACGCACGGCCAGGGAGCGACACGCTCCCTACACCTTGAAAGGGGTGG # Right flank : CTGCCCGTCCCAAATCCCTTGTGTTTCCAGCAACTTACCTCCCCCCTTTTCAAGCACCCCCGCCCTTCTACACGAACCTCGCGTCCCGCGTCCATCCCACATCCCCCAACCCCATGAAACTCCTGGGCTTTTCCCCATTCATGCACCTATGCGGTTGTCAAAGAGCACTCAACCCCATGAAACCACTCAGCTTTTCACCTCTTTCCGCCCCTCGCCGCCTCCGCCACGGCGAGGTGCTTGAATGTCCGCCGCCTCACAGTACCCGGAAGGGTGGCGGCTCCTCCGGCCAGTCCTCCTTGGGGTTGATGGCGCGCACCCGCTCCACGCACCCGCCGCACAACCCTATCACCAGCAACGTATCCACCGCGTCCATCCGCCGCGACAGCTCCCACCTCAGCTTCTCCCGGTCCCGGTCCGTCAGCGAGCATCGGAACACGGACAGTTGCAGCCACTCCCCGTACCCCTTCAGCAGCGCGTACACCTTGCGCCACCGCTTCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTCCGGCATCACGGCGAGCGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 71891-69124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQDG010000048.1 Myxococcus sp. RHSTA-1-4 NODE_48_length_72092_cov_172.133792, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 71890 36 100.0 36 .................................... CACCGCGGGGAAGCCCTCCTTCGAGACCGTTGCAAT 71818 36 100.0 33 .................................... CTTGGGGTTGGCCATGCCGGAGATGCCGGCTTC 71749 36 100.0 37 .................................... TCCGCTACCTCCAGGCGGCCCCGGCCCAGGTGCAGAG 71676 36 100.0 35 .................................... AACGCAGCGGCCGGGGGATGCCGGCGAGGAGAAGC 71605 36 100.0 38 .................................... CTGGACGGGGTGACCGACAACCTCGCCAAGGGCTTCGA 71531 36 100.0 39 .................................... CAAGGTGTCGGACTACGGGCTGAGCGAGCTGGAGCTGCT 71456 36 100.0 34 .................................... GTGACTGTTTTCCAAAACAGGGCAGGTACAAGGA 71386 36 100.0 33 .................................... CGAGGACGACTCTCCTCCCGTGTTCTACTCACC 71317 36 100.0 37 .................................... AGGGCAAGAAGGCGGCGGCAGCAGCGGAGGTGGAACG 71244 36 100.0 35 .................................... AGTGCCATTGGCGCCAACCTGGCTGGCAGTCGGGA 71173 36 100.0 33 .................................... CAACCTGTCTGCTTCTGGTGACCTGTTCCGGTT 71104 36 100.0 36 .................................... CGAGACACCCAAGCCCGAGTCCCTGGAGATCCGCAC 71032 36 100.0 40 .................................... TTCCGACGAACAACGCCACGCTGCACTGGGACAGGTACAA 70956 36 100.0 29 .................................... GCGAGCGCGCCGAATCCTGCGAGGAGCCA 70891 36 100.0 35 .................................... GACGAGCCCGAGTTCATCTATGACGGCAAGCGCCT 70820 36 100.0 39 .................................... GGCGGTGACGTCCGCGCACAGGGCCCGGGCCCCGGTGAG 70745 36 100.0 36 .................................... GGTGGCCTTCCTGACCATCAAGGTGGTTCTCGACAG 70673 36 100.0 37 .................................... CCTTGGGGATTCCATGTGACGACATGGAGCCCATGCC 70600 36 100.0 34 .................................... GGGGCGCTTTCGACGGGTGGTGGTGCGCGGTCAG 70530 36 100.0 35 .................................... CACGCCCAGACGCCCGCGCAGAGCTGGGGAATCAG 70459 36 100.0 36 .................................... CCGCCAGCACCCAGCCAATATCCGGCCACTCCACCA 70387 36 100.0 33 .................................... CGAAGCCCTCGCGAGGGTGCTGAACCACTGCGA 70318 36 97.2 36 ..................................C. CCCACGGCCTGCGCGCCGACGCACAGCAGTATCATG 70246 36 100.0 35 .................................... AGCCCGAAGCTCGCCGCGCCCAACGGTCCCCACTC 70175 36 100.0 35 .................................... GGCGCGTAGCGCGGACTCTCCTTCCACCCCTCCAA 70104 36 100.0 33 .................................... CGTGGCCGTGGTGTACGCGCCCAACGGCACCCC 70035 36 100.0 37 .................................... CCAGAGCCATCCGCACCATGCGGTAGTCCTTCTCCTG 69962 36 100.0 39 .................................... CCGACGCGCTGTCCGGCGGCATCAGGTTCTTCATGGCGT 69887 36 100.0 35 .................................... TTACCTCTCTACTGAGATGTGGTCTGCCCTCAGAG 69816 36 97.2 39 ..............................A..... ACCCTTCAACCAGGAGCATGCACCCATCATGAAGAAGAT 69741 36 100.0 37 .................................... TCACGTTCATGCGCCGTCACTTGCACGCAAAGAAGCA 69668 36 100.0 35 .................................... CCTCTTCATTCCGACGAGCTTCAAGGAGATGATTT 69597 36 100.0 37 .................................... TCAAGCGGGGCGAGGGCGACCCGTTCGCGACGGCCAA 69524 36 100.0 35 .................................... GTGGGGCGCGTTGCGCTCCACCAGCTCCGCCGCGC 69453 36 100.0 37 .................................... TGGCAGAGTGTATGCGTATCGACGGGCGTCCCTTCGG 69380 36 100.0 35 .................................... TCACCAGCCGCCGTGCCCTGCATAACCGCAGAATT 69309 36 100.0 40 .................................... GTCGGCATTCTCGCCGTGGCTGCCATACTGGAGGACAAGA 69233 36 100.0 38 .................................... TTCTGGGCGAAGAGCATCACCTCCCGCTCTTCGGTGAG 69159 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 39 36 99.9 36 GTGCTCAACGCCTTCCGGCATCACGGCGAGCGGGAC # Left flank : AGCGCGCGCAGCTCCCCGCGTAGCCATTCGGCCTCGGGACGCCATCATCGGCCAGGGTGGCGTCCCGGAGCCGGGCTTGAGGGGCATCACGCACCCGACGGCTCGCATGCTCCTGACGGATGCCCATCAACCAGCCGGCTTGCTCGCCCATCAGCAGGAGTGCGCGTCAACAATCCACGGGCTTGAAGCGCAGGGGCAGGC # Right flank : AGCCCCTCCAGATTCCCTCGTGTTTCCAGCAACTTACCTCCCCCCTTTTCAAGCACCCCCGACCTTCTACGCGGACTTCGCGTCCCATGTCCATCCCACATCCTCCAACCCCATGAAACTCCTGGGCTTTTCCCCATTCATGCACCTATGCGGTTGCCAAAGAGCACCCAACCCCACGGAAGCACAGGGCTTTTCCCCACTTTCCCACCGCTCCCACCGCCGCCACGCCGAGGTGCTTGATTCCACGCTCCCGCGCCCCAAGAGCCCAAAGGTACCCCCAGGCCCCACCCGCCACGACAGCCCCACGGGGCAACACGCCCCACCCAGGGAGCCTCACCCCGTCTCCAGCGTCAGCGCGGGAGCATACCCGCCCGCCACGGTGCGCTCATACGCCACCACCGTCCCCACCGCGTTGAGGCGTTGCCCCAGGAACAGGCAGCAGCTCGCCGGAGCGTAGAGAAGGAGGTGCGTCACCCCGGCCCGCCACCGCGCGCGGGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTCCGGCATCACGGCGAGCGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 634-170 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQDG010000068.1 Myxococcus sp. RHSTA-1-4 NODE_68_length_25434_cov_181.230351, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 633 36 100.0 37 .................................... GTAAGCTGGGCTGCTCGGAGCGGTGGGTACAGCACTG 560 36 100.0 33 .................................... TGATGTCATCGCGATGGAGACCCAGAACGGCGG 491 36 100.0 33 .................................... GTTCGACGGCATCCGCAAGCAGATGACCTCGCA 422 36 100.0 35 .................................... TTCGTGAACCTGCCCTACGGTGTGCCGTGCGATGG 351 36 100.0 36 .................................... ACTTGCAGGTAACTATGCAGTGGATGAGTTGGAAGA 279 36 100.0 38 .................................... ATGGCGGTCCTATCCCAGGGCTTCAGGGGGCCGCCGTC 205 36 97.2 0 ..............T..................... | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 99.6 36 GTGCTCAACGCCTTCCGGCATCACGGCGAGCGGGAC # Left flank : GGCCGGTGGTGCCGGTGTACTGCCGCGCCACTCCCGCCGACTTCTCCCCCTTCTTCAAGAAGCCCGTCTCATCCACCGCCAGCACGCCCCCCTCTCCCAGCCGCTCCCGCGCATAGCGCTGCACCTCATCGCGCACGGCCTCCTCGTCCCAACTGCCGCGCCTCACCATGTGCTGCAAGCCGTACGGGGCCACCCGGCCTGCCTCCTCGGACAGTCCCCACATGTTCTTTCGCTCCGTCGCCGACAGCAGCGCTTTGACGTAGCTGCTGGCCGCTTCGTGCGCTTCACGCCGACGGAAGTGCGGCTTCATGCGCGCGGTGACCTGCTCCAATTCCCCGCTCAAGGTCTCGACGAGTTCCTGCTCCTCGTGCTTGCTTGCTGCCTCTTCCATCATGGGGGCCTCGGGACTACCTCCTCTGTTGGTTCAACAGTGGGCTACCCATGACATCTTCCCATTTACTACTGTAGTACCTGCCGAGCACCGTCGAAGAGGCCTGCAT # Right flank : CGCCGTCATCCACTGTTGACGCGCACCCAGGTTGAGGGAGCGAGGCCCGAAATCGAGCCGGCTGCGTGATGGGGGCGCGACGCCCGCCCATCATCGGCGAGAAACTGGAGCGCCGCGCCCGCTGATGTAGCAGGCGGCCAGGAGGACGGGGAGGAAGGTGCGCAGAGGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTCCGGCATCACGGCGAGCGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //