Array 1 166909-165130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWQ010000002.1 Listeria seeligeri strain FSL L7-0401 NODE_2_length_384836_cov_19.697772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 166908 29 100.0 36 ............................. GTTGTATTATTAGAACGAATTTTATTCGAATTAATC 166843 29 100.0 36 ............................. TATCAAAAGCCATTAATCGTTGGGGAACGAGTGTTT 166778 29 100.0 38 ............................. TTACAACATGTATTTAAAAAGAAAGAAAATGAATTACC 166711 29 100.0 36 ............................. TCAACAACGTAATTGCTGCGTCAATAAGTTGCGGTA 166646 29 100.0 35 ............................. TAAAGAATTAAGTGAGCGGGCTACATCTGTCGCTG 166582 29 100.0 35 ............................. CAGGAAAACAGTATTACGGAATAATTGAAGACTTT 166518 29 100.0 36 ............................. ATACCTTGCCGACGAGTTAACAGCCATTGAAGCCTG 166453 29 100.0 35 ............................. CAGGTATGTTCACGAATGACCAGATTCATTTCTTT 166389 29 100.0 34 ............................. GAATAAAGTCCTACTTTGACCCCAGTTTGACCTT 166326 29 100.0 35 ............................. GCCATAGGAGCGCCTACAATAGCATCGGTAAGAGT 166262 29 100.0 34 ............................. TTTGATAAATTTGACGTTCTCCCATCACTTTTCC 166199 29 100.0 36 ............................. TTCGATGACCGAATAACAACAAAACTAACATCTTCC 166134 29 100.0 36 ............................. CTTTTTTTAAAACATAGATAACCTTCGTCGGAAATT 166069 29 100.0 34 ............................. AGAAAGTTGTCGGCTGCGTTCATAACCTCACGAT 166006 29 100.0 37 ............................. ATGTTTTCTAGGAATCACCTTTGTATTATGAGATTTT 165940 29 100.0 37 ............................. AAATGTTCAGCTAATTCGTTGTTTGTTGCCGTAGGAT 165874 29 100.0 35 ............................. TAGGTATATTCCCGAACGTCACGATTCATTTCTTT 165810 29 100.0 36 ............................. AAAGGTGGCGATTTTCTAGGCATGTGTTCCGACGAT 165745 29 100.0 36 ............................. TATTCAACTGAATCAGGACCTTTTTTTGCTCCATCG 165680 29 100.0 37 ............................. ATCATTCTTAGGAGATTATAAAATATTAGAGGTTATA 165614 29 100.0 35 ............................. ACAGACGGCAATGAATTTCAAGAACGATTTTTAAA 165550 29 100.0 38 ............................. TCGCTTATATGCGAGTTGACAGCCGCGATAATATACTC 165483 29 100.0 35 ............................. ATATAACTAACATTTTCAGCGACGGACGCGTCCAT 165419 29 100.0 37 ............................. CTGGTTGGAAAATGAAAAAAGTGGCTAATGGTTATGT 165353 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 165288 29 93.1 36 .......C....................C TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 165223 29 82.8 36 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCC 165158 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.2 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 176836-175514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWQ010000002.1 Listeria seeligeri strain FSL L7-0401 NODE_2_length_384836_cov_19.697772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 176835 29 100.0 34 ............................. TGGTGAGCTTTTAACAGCTTGCTCTCTCTTGAAT 176772 29 100.0 34 ............................. ATAAATGGAAAGACTCAAATAATAAATTTCCAAC 176709 29 100.0 35 ............................. GAAGCAAAGGCAATTACTTAAAATTATCTAAACTA 176645 29 100.0 36 ............................. AAACATTTGCTGAAAGAAAAAATAAAACAAAATCGA 176580 29 100.0 36 ............................. GAGTATTTAGTTTAACTCCTTATGCACGCAGGCAAT 176515 29 100.0 35 ............................. AATAATGCATGTGATCCAGTGACATCCAAAAATGC 176451 29 100.0 37 ............................. GTATGTATGACTATTAGTGCCGCCGTCTGGGCGCGCG 176385 29 100.0 34 ............................. TTAAATACTCCTGCACCTTCTAAAACTTGATTAA 176322 29 100.0 35 ............................. CGGGATTGGTGTAAATCTCGATGTTTGGGAAATAT 176258 29 100.0 36 ............................. GATTTCAATACCTTAATCAAGAACGCCAATGACCGC 176193 29 100.0 37 ............................. TCCTGTGCTATTCCAACCCGCTAAATACTCCCCTGCC 176127 29 100.0 36 ............................. ATAAATATTTTTTCCGTCAGGGTTCACTTTTTGAAT 176062 29 100.0 37 ............................. AAGATTGGCGTGTCGTCCAACGCCGCGGGTGGTATTA 175996 29 100.0 38 ............................. TATAACATTCTGTGATAAGAAGTAAATCATTTAAGTAC 175929 29 100.0 34 ............................. ATACTTTCGAGTCAGCACTTGCTTTTTCACGAAT 175866 29 100.0 34 ............................. CTAATCTGAGAATACTAAAACGAGCTTGTTCCGC 175803 29 100.0 36 ............................. TCGTTTGAATACAAACATAGGTCTACAGCAACACCA 175738 29 96.6 36 ........................C.... CAAGTATAGCGATTTTACTTGATGACCCGGCTTGCT 175673 29 100.0 38 ............................. CGATCCACAGCTGAAATCTCTTCAGCAAAAGCGTGTTT 175606 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 175543 29 86.2 0 ........C....C..A...........G | T [175516] ========== ====== ====== ====== ============================= ====================================== ================== 21 29 99.2 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCAAGTAGCACTATCATAAATTTTTCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTGAAAAAAACACTAGTATTTTCAGTTTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGTGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 183690-183076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWQ010000002.1 Listeria seeligeri strain FSL L7-0401 NODE_2_length_384836_cov_19.697772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 183689 29 100.0 35 ............................. TTGTTTCTTCATCCTTCGTCGTAGTGGTTCCTTGT 183625 29 100.0 37 ............................. TCTGTCAACCAATCGGCAGATGCTTACAAAATCCAAG 183559 29 100.0 34 ............................. ATATATGCTTGCTTTAGAATGTCTGTTACAAAAA 183496 29 100.0 39 ............................. TGAATTTTGTGTGGATTCTTTTGTTTGGATAGTAGTCTT 183428 29 100.0 37 ............................. AAGTCCTACGGGGTCAACACGAAGAGAAAGGGTTTCA 183362 29 100.0 35 ............................. ATTAACGGCAGTTATCATTATAACAAAGTGACTGA 183298 29 96.6 34 .....................G....... TTAATTATTGAAGCTGGAATCGAACTCCTTTTCG 183235 29 100.0 37 ............................. CAAGTTAGTCGGCTCATTTTAAAATGGTTAGCGAAAC 183169 29 100.0 36 ............................. ACATCGAATTAGATGGATTTATAGTGACCCCTTTTA 183104 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 99.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAATGCTACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATTGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTTGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //