Array 1 55386-50189 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHSH01000048.1 Halochromatium roseum strain DSM 18859 scaffold0048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 55385 28 100.0 32 ............................ AATACGAACCCGGATCACAATCGGCCCGACAT 55325 28 100.0 32 ............................ AGCCCAAGACGTCATAGATCGCATGATGATAT 55265 28 100.0 32 ............................ GATGGGAAATGAGGCCGCTAGACCGTCCGAAA 55205 28 100.0 32 ............................ TCAAGTTGCGTGTGAACAAAGGCCGATCCCCC 55145 28 100.0 34 ............................ CGCCAACGCTTTCGCTTGTTTCTTCGGATACGCC 55083 28 100.0 32 ............................ CGACCTGGGCGAACGCATCAGGCACAGGTAAA 55023 28 100.0 32 ............................ TTGCCGATCGGCATCATCGGCAAAGATTGAGC 54963 28 100.0 32 ............................ TCAAAAGGCATCCAAGACCCCGCCAACGCTTT 54903 28 100.0 32 ............................ TGGCTCGGGGAAGTCCTATAACTCTGTGGCGA 54843 28 100.0 32 ............................ ATGAACCAGACAACGAAATCATTAAAGAACCC 54783 28 100.0 32 ............................ TATTTGGTTCGCTTTGCTTGTTATTGCTGGCT 54723 28 100.0 32 ............................ GATTTTCGGTATTTGGCTCATGTCGTCGTCGT 54663 28 100.0 32 ............................ GATATGTTGCTTTTGGTCGTTGGTGTTTGGTC 54603 28 100.0 32 ............................ TACCCGGCGACCCGGAAGCAGTGCAGCAAGCG 54543 28 100.0 32 ............................ GCCGCGTTAGGCCCTCGGCATCGGTCAACAGC 54483 28 100.0 32 ............................ AATAGGGCCTGTGGTCGTGGTGTGGGTGATGC 54423 28 100.0 33 ............................ GTTTGGGGGGCTTCCCTTGATACATAGTCGTAT 54362 28 100.0 32 ............................ ACTCCGCGAGCAGCGGTTAGCCTGCTCCTGGT 54302 28 100.0 32 ............................ CTGCTGCTGCGTTCTCGCTCGTCGCTCCGATC 54242 28 100.0 32 ............................ TGATCCGGCGGCATCTGTTTTTGTTGCAATCC 54182 28 100.0 32 ............................ GAACGGTGAGACTCAGAGCCAGACCAAAGCCG 54122 28 100.0 33 ............................ CTTCCGGGGCGTTTCGGGCTGGATTCCACAAGC 54061 28 100.0 32 ............................ GTGTTGTGGGTGCTCTAGCGCGGCCTCAGCAA 54001 28 100.0 32 ............................ CTGCGGAAGTCCGTCTTGAGCGTTACGCGTTG 53941 28 100.0 32 ............................ AAGTTGCCCATCGTGTGACCCCGTAACACCCA 53881 28 100.0 32 ............................ CTGGGTGCCTCTTGCGCAGTCAATTTGTGCAG 53821 28 100.0 32 ............................ TTTTTGAGTTCTCCGGCTACTCGGGTGCCAAT 53761 28 100.0 32 ............................ GACGCAGATGGACCGCTGCTTCATGGACGCAT 53701 28 100.0 32 ............................ CCCGCAAGTCCAGCAATGACGGGGCTTTCATG 53641 28 100.0 32 ............................ ATTGAGCGATTCGTGCTGGCCCACGATGTGGT 53581 28 100.0 32 ............................ TCACCTGGCGCCAAGCCGTGCGCTTTGCCGAG 53521 28 100.0 32 ............................ ATTGAGCAGCGGCTACTCGCCCAAGTCTCCGG 53461 28 100.0 32 ............................ ACAAACGCCGGGACATACAGCGCGCTGAACAC 53401 28 100.0 32 ............................ ATCGACAATGCATTCTATCTCGCCGGATCGAC 53341 28 100.0 32 ............................ GTCGAGATCAACTGCATGTCGATGTTCGCCTA 53281 28 100.0 32 ............................ AATGCCATCACGAATACCACGCAGCTCGCGGA 53221 28 100.0 32 ............................ ATCATGCAGGCCGAAGGCGACGAAGCCGGGGC 53161 28 100.0 32 ............................ TGCTCAAGGCGGTCGAGGCGGCGTTTAATCCA 53101 28 100.0 32 ............................ AAACCGGCCACCATGCTCTTGGCGCCGTCGCT 53041 28 100.0 32 ............................ GTGACTAACGAGCGCTCGCGTCGCTTGTTCGG 52981 28 100.0 33 ............................ TCCGACGGATCGCCCCGGCTATCCCCCCGAAAC 52920 28 100.0 32 ............................ AAGAGCGTGCCAACGACATGGCACACGCTCTG 52860 28 100.0 32 ............................ CGATTCAGTGAGGCACAGTCCGCTGGTGTCGC 52800 28 100.0 32 ............................ AGATAGTACAAGCGGTTTAGTCGGGTATTGAT 52740 28 100.0 32 ............................ CCCCGAAACGCCCCGTACCATTCGATCTCCAT 52680 28 100.0 32 ............................ AGGCGAAGATCACGCGGGTCTTGGCGATGAGC 52620 28 100.0 32 ............................ GCGACAGTGGGCGGCGCGGTGCTGCTTGTGAT 52560 28 100.0 32 ............................ GTTCGGCACAGACGGTGTGGCTCCCCACGTCA 52500 28 100.0 32 ............................ GCTCCAGCCGTGTAGGCTGACCTCGCCGCCGG 52440 28 100.0 32 ............................ ATCCCAAGATGGCGGCGCAATGGTCGATGATG 52380 28 100.0 32 ............................ ATCCCCAAAATCACAGATCACATCTCTAGATT 52320 28 100.0 32 ............................ AGTTGGGGACTTCTGATGATGACTAGATGGTG 52260 28 100.0 32 ............................ GTGTTGTGGGTGCTCTAGCGCGGCCTCAGCAA 52200 28 100.0 33 ............................ AGGCCAGCATGGGCGCCAAAAAAAAGCCCTCAT 52139 28 100.0 32 ............................ ATCGGGGGTCTCCGCTGGTGGCGGTGGGTGCG 52079 28 100.0 32 ............................ GATCTCCCAACAATAGCCAAGAGCGCACGCCT 52019 28 100.0 32 ............................ CGAACCGGGACATCACGATCGGGCACAGCATC 51959 28 100.0 32 ............................ TTGAGCGCATGCCCGCGGGAAGCTACGGCAGC 51899 28 100.0 32 ............................ TGCCAAGGCCAGGTCTGCGAGTACGGCGGCAC 51839 28 100.0 32 ............................ TGAATCAGTCAACTCAGGCAAAACACCGGAGT 51779 28 100.0 32 ............................ TGGGGAACCTGCTACCGGCGTTTCCTGTGGTC 51719 28 100.0 32 ............................ TGAATCTCTATGATTCAGGCGTGCTTGTTTCT 51659 28 100.0 32 ............................ TCTGAGACAGCGTCCACGCTTCGATGTGCTTT 51599 28 100.0 32 ............................ TAGCAGTGAAGCGCACCGCAACACGAACGACG 51539 28 100.0 32 ............................ GTTTTCGGCAGCGTCCACTTTTCAGTCGTAGC 51479 28 100.0 32 ............................ ACGCGTAAACATCACGCTCGATGCTTGGTTGT 51419 28 100.0 32 ............................ GATCTCGGAGTAGTTGCTGCACCCGCGCAAAT 51359 28 100.0 32 ............................ ATCGATGGCTGGGCACTGGCTCCAACACAGCT 51299 28 100.0 33 ............................ GGTGAGGTCTTTATCGGCGCGCCGATTCTCTGC 51238 28 100.0 33 ............................ CGGACGAAACAGGCGAAACGCATCAGTGAAAAA 51177 28 100.0 33 ............................ TCGAATGGATCGCATACGCCTGGCTTGCGATGC 51116 28 100.0 32 ............................ GACTGCGGCAAAGGTTGGCGCCTATCTGTCAG 51056 28 100.0 32 ............................ CGATCGGGACTGATCTGAAAGACGGTGCCTGT 50996 28 100.0 32 ............................ ACCGAACCTCGGCGGGACTGCCGAGCGTGTGA 50936 28 100.0 32 ............................ TTGAGAAGCACCAGACCCTGGAGGGGAATCTG 50876 28 100.0 32 ............................ TATCGGCGGCTGGAACATGACCCGCGTGACGA 50816 28 100.0 32 ............................ CTCAACTGGCATCGGATACGTCTGCTTGATCT 50756 28 100.0 32 ............................ GTCAAGCGTCTGGCACGTTGGCGAGATGTTCG 50696 28 100.0 32 ............................ TACAGTGTCGACGGAACCTACCTGGTCGAAAT 50636 28 100.0 32 ............................ CGCTGGCCATGTCGCGATGAATAGCCAGTCAC 50576 28 100.0 32 ............................ TATGACGGCTCGGCTTACGCCTGGAACCGACG 50516 28 100.0 32 ............................ TGGCACAGCCACTGCAGCACCACATTCAGCCG 50456 28 100.0 32 ............................ AAGGATTCAACACGCTTAACCGCCATCAGACG 50396 28 100.0 32 ............................ TCCGAGCGGTGGCGCGACAAGACCACCGGCGA 50336 28 100.0 32 ............................ TTTGATGCCGAGGCCTGGCCCGCGTTGCGCAA 50276 28 100.0 32 ............................ CAACGCCTCCGGTTGCATTCACATCGCGCCAG 50216 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 87 28 100.0 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : TCTGGCGCGCTTGATGGCACAATCGTGGCTACAGGGGATGCGCGATCATGCCGAAGTCAAGGACATTGCGCCTGTGCCGAAGGACGCTGTTCATCGCAACCTGCGTAGGGTTCAGGCCAAGAGTAGTCCAGAGCGCTTGAGGCGCCGACAGATGCGTCGACATGGGCTCAGCGAAAACCAAGCACGCGCTCGCGTCCCAGATACCGCGGCTAAGGCGCTACATCTCCCTTTTGTGACCCTGAGAAGCGCAAGTACCGGTCAGACCTTTCCGCTCTTTTTGCAGCTAGGTCCACCCGTGCCGCTAGCACAGCCGCGGGGCGACTTCAACGCTTACGGCTTGAGCAGTACAGCGACAGTCCCCTGGTTCTGACCCTTTTCTTGGCGTTCCTCATAAGCTATTGTTTCTTAAGCCTCCTCCATAGCTAAAATTACAGAGGGCGTAGGCATCGATAGTTCTATAAAAACATGAAAAACCAAGATTTTAGGTCAATTTTGGCCTT # Right flank : GACTGCATGTGAACCTCCCCCAAGGTAATCGTTTAGCCCCCCTCTAAACCCAGGGGGGCTAAACGATTACGATATCGGATGATACGGTTATCGTGGATGTCATGGCGAGTCAGCGGTAAACCTTGCTCCTGTGATCGATAGAAAGCGCCAACACCACGCAACGGTCATCGATGAGCCGGCAAATCAGCCGGTAATCGCCGATGCGATAGCGCCACAACTCTGTCAGCGTGCCTTGTAAGGCTTTGCCAAAACGGCGAGGACTGTCTTCTGTCATCAGACGCTTGCGAATGAACGTGCCAATTCGCCGTTGCGTCGTGCGATCTAGGCGCTTGAGATCGCGCTGCGCCCGACCCGTGACCTCAACGTGCCAGACCAAGGCGCTTTTCCACTTCAGACCAAGGTGTTGTTGTTTCCTCGCCAGACTCAAGCTGCCGGCAGACCTCCTCGGCTGTCTGAACATCCTGCAAATCCTGCAAGTAGCTCAGGACAGCCTCGTCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //