Array 1 5299-4248 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABLCL010000036.1 Holdemanella biformis isolate MGYG-HGUT-01711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 5298 31 100.0 34 ............................... TCAATGCCACATTCTTCTGCCGTTTTCTTTTTGT 5233 31 100.0 37 ............................... TTATTTTCATACATACCTTCTTGGTTCTTACGCATAT 5165 31 100.0 36 ............................... ATGATCTCACCTGTTTGTTCGTTTTCTTTTTCCACA 5098 31 100.0 36 ............................... TGTCTGAATTGCTCAACGATGGATGTTCTAACAATA 5031 31 100.0 37 ............................... TTGTAATGTTTTCAAATCCTATCATTTTTCTTGTTTT 4963 31 100.0 40 ............................... TTTTTGGCTTTCGCACTCTTCGATTTTGTCAATATCTTCT 4892 31 100.0 35 ............................... TTTAATCTTTGCTGATCTGTAAGCGGCTTTTTATT 4826 31 100.0 37 ............................... TGTAAAAGTGCAATAAGCTGGTATATCCTCATATAAT 4758 31 96.8 36 ....A.......................... CAATAATTTATTTAATAAACTTATAAACTTATTTAT 4691 31 96.8 42 ....A.......................... TTGTTTCTCCCGTTTTGTATAATTACCTCTTTACCTACTCCT 4618 31 93.5 36 ....A....T..................... TTAGTAGACAAGAACACACATACATTCAATGCAAGT 4551 31 96.8 42 ....A.......................... TGAGCGCCATGTTTAGCGCTGTTACCAGTCCAGATCTGAATT 4478 31 93.5 36 ....A....T..................... ATCAACTCATCGATTCTTTCTTCAATCATTTTTCTT 4411 31 96.8 36 ....A.......................... TAATAATTGAAATGTTTTTTTTCTTTTTTCCATCTA 4344 31 93.5 35 ....A....T..................... TCATGATAGATTACATTCTTATCAATTGGGTTTGA 4278 31 77.4 0 ....A....T................TGAAT | ========== ====== ====== ====== =============================== ========================================== ================== 16 31 96.6 37 GTTGTATATCGTTCTTATAAAGGATTAACGC # Left flank : GTACATCGGTTATCTGAATACATTAAAGATAAGTCTATTACACTTGATTTTTTTGTGATGAAGTGGTGAGATTATGTACGTTATATGTGTGTATGATGTTAACGAAAAAACATGTGTTAAAGTAATGAAAATTTTAAGAAAATACCTGTTTCATATACAAAAGTCTGTTTTTGAAGGAACTTTAACACCCAAACAATTTAGTGTCTTAAAAGAAGAATTGCATAAAGTTACAAGTGATGAGGATTCAGTATTGTTTTATTTTTCATATAATGAAAAACAGATATATAAAGAAGGATTGAATAAAGTGAATGAATCTCTAAATATTTTGATTGATTGATCATTCGACCATCAGTATAAAATTCAACCAAAAAAGCCTATATTTCCATTAAAAAGTAAAAGTGGTCGAAAAAATTTGACATATTTTCCTAATGATTACTGAATTTTAGAGTATTTATAGATATTTTTGTAGTAAAATACTACGTATATGGCAAAAATTTGCT # Right flank : TGTGGTTGTTTAAGTGTTAAAAAAGAAGTATTGCTACTTCTTAGGTGTTATATTAACTACCACATACTCACATATACCCTCTGTTCTTATAGGAAAATCCCAACCAACAAGGCCTGAATTAATGATTTTTGTCCTGTGCTTGAATGTTTCTTTTCCGTAATTACCGGCAAAGTCAGGTTGTAAATGGTAAGAATAAGAGAGTGGAAACATTTGTCCGTTATAAGTGTGACCGCTGAGTTGAAGGTCAACGTTGTTTTTGATATTTTCCCTTGTTCCTTGTGGTTGATGGTCGAGGATGATGTTGTAGGTTTTAGTGGATAGATTGTAGTCTTTTGTTTTCTTGCGGTTTTTGTTTGTGTAATCTTTTCTGCCGATTAGAGTTATGTTATTAAAATGTACTTCTTGATCATTTAGAATGGTGATATTGTTTTTTGTGATTTTTTGATTGAGTTTATTTCTTGTGAATTTTATTTTGTCTTCGTGATTACCATATACAAAAT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATATCGTTCTTATAAAGGATTAACGC # Alternate repeat : GTTGAATATCGTTCTTATAAAGGATTAACGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 16420-15495 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABLCL010000048.1 Holdemanella biformis isolate MGYG-HGUT-01711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 16419 31 100.0 38 ............................... ATGTTAGAATCAGAACAGCAAGGGTCATAATCAAACAA 16350 31 100.0 36 ............................... CCTCTAGAGCCTTCATTAATTTTGTTAAATCTAAAT 16283 31 100.0 40 ............................... TGCTTCTCCTTGAAAAAACAACTCTTTTAATGTTTGTAAT 16212 31 100.0 36 ............................... TAATTGGCACGTATCGCATCATAAAAAACAGAAAAA 16145 31 100.0 40 ............................... CTGCAAATACCTACAGCTACGATTCTCGGTTTGAACCCTA 16074 31 100.0 41 ............................... TTTCTCTTCGCCTTCTGGCGGTATATGCGATGAAAATCTAT 16002 31 100.0 36 ............................... TCTACAAAGTCTCCTTCCTTTAGGATACGTTCGTAT 15935 31 100.0 37 ............................... AAGTACTAAAGCATCATATTGTGTATCCCAAAGTTCT 15867 31 100.0 41 ............................... TTAAAAATATATTCTCCATGATAACAACCAAACTTAGCAAT 15795 31 100.0 38 ............................... CTCTTACCGCTTAGCGGCGTATCCATGAAAGTGGTTCA 15726 31 100.0 35 ............................... TCGAACAGTATAGAATCTATGATTTAATTGTAGGG 15660 31 96.8 38 ...G........................... TTGGATGTGATAATCTGATAAAATCATGCCCTCTATTG 15591 31 100.0 35 ............................... CAGCAGTTAATTCTGCCAAGCTCTATAGTTTTCCA 15525 31 83.9 0 ................G........T..TTT | ========== ====== ====== ====== =============================== ========================================= ================== 14 31 98.6 38 GGGAAATATGATACTTATAAAGGATCGACAC # Left flank : TTCAGACCCAGATAATCGTAGACCAACAAATTGGCAAGAACCAAAGGAGTCTTATGAAGACATTTATTATATGACTCAATTATTAATAAAACTCAGAAAAGAACATCCAGTATTAGCTAATGAAGGAAGCATTGAATGGATCCATCATAATGAATTATTAATTATGAAACGAGCTAATGAAAATGAAACACTCTATATCGTAGTCAACACAAAAGAGTATACTCTTAATACAATGTTGCCAATGCAAAATGAATTTATCAATATTATCAATAACGATACAATCCATCCAAATATAGAAATACAAAGACTTGGCTTTATGATTCTAAAACCAGTAAACCAATAACTAAAAGTCTACGTTTTTCGACCATCGACCTATTTTGAAGGATTTTGAGCACCAAAAACACCACAAAATACCGAGGTGGTCGAAAAAAATAGGCTAAATTCAGCCATTTTTCAATATTTTTATCAACTAAAGCCCAAAATGTGCTATATTTAGTAAG # Right flank : ATTGAATACTAGAAATAGTATTCTTTTTTTTATGTTCTTTTTAGATTTGTTGGTTAATTTATTGCTTTTTTTCTACATGTAATAGTAGTAAAGGAGTGATAAGTAATGGCTTATGTATTTCATAATCGAAATGAAAATAAAGATAAATATGATGTTTTAGTGAAAGAGGCTCGTAGTGTTCGTAATATGGGTATTTTGTTGACTTTGGGTTTGATTGTTTGTGTGATGATGGTTCCGTTTTCTGTAGTGTCTTTTTGTGTGATTGGTTTTGGTGTGTTGAGCTTAGTGTATTTAATGTATAAACATGGAAATGTGATGAATGAGGCTGGAATTTTGGCTAGTGGAGTAAGTGGAGAAAATAGGGTGTTTGATATGTTGCGTCAATTGCCAAATGAATATGTTGTGGCGACAAATGTTCCTGTTTCTTATGGTGAGAATCGTTCGGAGGTAGATGCTTTAGTGATGAGTCCTTATGGAATGTATGTTGTGGAAGTGAAGAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAAATATGATACTTATAAAGGATCGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 28842-28196 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABLCL010000048.1 Holdemanella biformis isolate MGYG-HGUT-01711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 28841 31 93.5 39 .A........................A.... GCTCCTATTTTTCAAGAGCCTCTCCGCAATGTTTGACAA 28771 31 96.8 35 .A............................. TTGAGCACCTTCCACTTTGTTTGTATTCAAACTAT 28705 31 100.0 39 ............................... TATCATGTCTGATAGACATACCTCTTGGATTCCCGAAAC 28635 31 100.0 38 ............................... TATCTTCGTTGATATCCAAAGCTTGCCAATAGCCGTTA 28566 31 100.0 36 ............................... TTTTTTGATGTATTCAAATACATCTTGCTGAGTTTT 28499 31 100.0 36 ............................... ACTTCTAGCGGCAAATATTTCTTCTAAAGTTCTTTC 28432 31 100.0 38 ............................... TTAGGAGAATTCCATAAATTATGTCCGTTTTCTAGTAA 28363 31 100.0 39 ............................... ATTAGCCCTAATGTACCAGCAACCAATGCCATCACCACG 28293 31 100.0 37 ............................... TGATATTCACCAGGCCCAAACGTTCCTTGCAATACCA 28225 30 83.9 0 ........................-.T.TGT | ========== ====== ====== ====== =============================== ======================================= ================== 10 31 97.4 38 GGGAACTATGATACTTATAAAGGATCGACAC # Left flank : TTGTTAGAAATCGCCAAGACAAATTATCAAACCAAATACGAGTTGTATCTAGATGCCAAGAAAGAAAAAGCAGATGCCGATGCCAACTACAATAAGGCTATGCAGGCATTAAATGACTACTTGAATTCACAATCAACCAAAGAAACTGAAGTTACAACCAACAAAGGTAATGTACATACAGGCGTTGATGCAAATGTGATGGGATCCATGTTAACAAGCATGGTAGCAGGCCTAGGAATTGTAGGCATCCTACACAAAAAAAGAAGGGAGGAGAAATAAATAAAGTAAATGAAATCAACAACTAAAGTAGGCATTTCCTGCTTTAGTTTATCTAATATTTTTAATCAATCTAATAAAATTTTCGACCATCGACCTATTTTGAAGTAAAAATTGCACAAAAAATACTCAAAAAAAGCGAGGTGGTCGAAAAATATATGCCAAAATCAGCTTTTTTCCAACATTTTTTAAAACAAAATCTCAAAATGTGCTATATTTAGTAA # Right flank : GTTTGGTGTAATATGCTTTTGTTTTGAATTATTGTTATTTGATTGGTTGAAGAGGACATCAGAGGATGTTCTTTTTAATTTATTTAGTTTTAGGTTAATTAATTTGAATTGTTTGACATATAAGAAGTGAAGGAGGGGATAAGATGTTTGTGAATGTTTCAAATCATCCTAGTGAATTGTGGTTAGATAAACAAAAAGAGTGTGCTTTGTGTTATGGAAGTATTGTAGATGTTGCTTTTCCTGCAATTCATAAGGATTATGATAGTAATAAGTATGATGAATTGGTTGAATTGTATTATGAAAGAATTATGGGTCTTTATCCGGATGTTGTGATGGTCCAAGGTGAGTTTGTCTTTACATATAGGTTAGTAGGTAAGCTGAAGGCTAGTGGTATTCGAGTTGTTTCAGCTCGTAGTGAGCGTGTGTGTCAGGAATTCAAGGATGAGAATAATGTGATCCATAAGCATAGTATTTTTGAGTTTATTGACTTTGTGGATTAT # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAACTATGATACTTATAAAGGATCGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1386-408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABLCL010000043.1 Holdemanella biformis isolate MGYG-HGUT-01711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 1385 31 100.0 35 ............................... TCTATCGATAACATCTTTACAAGCAGTTGACACTG 1319 31 100.0 33 ............................... ATGCTTCCATCGAAATTCAAAACGTCTTCTACA 1255 31 100.0 39 ............................... ACATAAAGATCCTCTCCAAATACAGCGATTAATTCCTGC 1185 31 100.0 36 ............................... TAATGACAAAGATGGTCTTTTACTTTGTCTCCATCA 1118 31 100.0 38 ............................... TGCCCCCAGTTTTCCTTTCCTTCATAGTCATTGTCAAA 1049 31 100.0 35 ............................... AACTTAACATATGTCTTAATTTCATGGTTCCAAAG 983 31 100.0 40 ............................... ACTATCTGTGCTTTTTCTGTTGTTTCATCTTGTATTCCGA 912 31 93.5 38 ......................T..C..... TAAAGTAACCATAGGTGAATCTGTATCTACTTCCTCAT 843 31 96.8 38 .........................C..... GAATTCATGAGCAAATTCAGTAATTGAATATTCTTTTC 774 31 96.8 37 .........................C..... TCGCTAGCATCGTAATCATACTCTGATTTTTGAGAAG 706 31 96.8 38 .........................C..... TTTGAATAGGCCCTTGAATTGGTTCATTTACATTATGA 637 31 90.3 36 ..G..............A.......C..... TGTGGATTACGAATAAATTCTTCATAAATCCATCAT 570 31 93.5 35 ..G......................C..... TGATGCTTTCTTTTCAATTCTAAATACGACATAAT 504 31 87.1 36 ..G......................CA..G. TAGTAACTGTTACCAGCCATTGGATTAACTATATTT 437 30 77.4 0 .....C....C.........-...G...ATT | ========== ====== ====== ====== =============================== ======================================== ================== 15 31 95.5 37 GGAAAATATGATACTTATAAAGGATTGACAC # Left flank : ATCCTGCAGACTTGTCAGAAGTTGAAACACCGGTTGAACAAAGACTTAAATACGTTAAGAACAACTTGAAATCAGATATTAAGCAACTACTAGATATTGGACTTACAGTTGAAGAATTAACATTAATGATTCAGCAAAATGCCAATATTATAGCAACACAATAATCTTTATATTTGGGGAAAGGGGCTTTGCGCCCTTTTGTACTTCTAACTTCTTCTTTTTATAAATTTTATTTTCAGATTAGGTACCTCCTTGTGATTACTTATATTTAAAGTGTAAACAATATTCTTATATAATTCAAACAAGAGTTTAAAATATTAATACATGGTTATACATTCACAACCAGAATATGACTAAATTTTCGACCATCCCCCAAATTCGAGCTGATTTAAGCATAAAAAATAGTCAAAAAACAGGAGATGGTCGAAAAATATATGCCAAAATCAGCTATTTTTCAACATTTTTATCAATCAAAGTCCAAAATGTGCTATATTTAGTAA # Right flank : TTTGGAGGCTTGGCCTCCAATTTTTTATTATTGTTTCTACGTGAATTTATTTTAGTGATGAAATATATGCTGCTTTATGTGCAGAAGAGTGTTGTGTTGTAATGATGTCAGTAAGAACATGTGTTTATAGATTTTTTGTTAAATGAACAATTGTGATTGGAATTGAAAGTGCTATCTAGATTGATTGGATAGCGTTTTTTATTTGTCTAAATTCATGTTTTTTAAATTCTTGATTAATTCTATGAAATATCAAGACATATAAGGGTCGGAGGTAGAAAAAGAGGTGTGCTCATATAAAAAGTGTTCGTAAATAAATTTAAATAGTTGTTAAATACATTGAAATTGGATGTGAAAGGGTATCTGTGTTTGACGATATTAAACATCGTTGAAAACATGGATTCGATTTAT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAAATATGATACTTATAAAGGATTGACAC # Alternate repeat : GGAAAATATGATACTTATAAAGGATCGACAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //