Array 1 14495-18183 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBKP01000034.1 Gemmobacter caeni strain DSM 21823 Ga0196851_134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14495 29 100.0 32 ............................. TCGGAGTTCACGAGCATTTGGCATGTGATCGG 14556 29 96.6 32 ............................A TCAGATGGCCGGAAACTTTTTCGTCATGGAGG 14617 29 100.0 32 ............................. CTGAATGAACAGAGAAATGGCCCCCGCCCGGT 14678 29 100.0 32 ............................. CCGACATGCCCGCCGCTGCCACGCTCGAACAC 14739 29 100.0 32 ............................. TTGCGGAGAAGGCGCGCGGCCAACGAAATGGC 14800 29 100.0 32 ............................. CCGCAGGCTTGGCGCCGTAGACATTGGAGGCG 14861 29 100.0 32 ............................. CTGCCGGTGACGGTCAATGTCACCGCAGGGGC 14922 29 100.0 32 ............................. CGGTCGGTCAGGATGGGCGTCGGGCCTATGAA 14983 29 96.6 32 ............................T ACGTTCGGATGGACGCAGAGCGCCGTTGATCA 15044 29 100.0 32 ............................. ACCTTCGCGGAGATAGTGGTCTGGCCTATGCC 15105 29 100.0 32 ............................. CTGGTCGAGGCTGGCGCGAGCAATCAGGCGCT 15166 29 100.0 32 ............................. CCGCAACTCTGCCCGGCAAGATCGGTGCTGGG 15227 29 100.0 32 ............................. CCTACTACAGTGCGCTCAACTGCCTCTCTCAC 15288 29 100.0 32 ............................. CGGACAAGCGAAGGCTATGTTGTCGCTCGGGC 15349 29 100.0 32 ............................. TTGCAGACGCCAAGGCTAAAATCCTCTCGGAT 15410 29 100.0 32 ............................. CACTTGACCGGCTGATTGAGGCTGTGGAGGCG 15471 29 96.6 32 ............................A TCTGGCGGATGGTGCGGTGGTCTATGGCGGGC 15532 29 100.0 32 ............................. GCAGCACGGTCAATCTTGGAGACTCGTTCAAT 15593 29 100.0 32 ............................. GTTGATTTCCCGGCCGCGCGCGCGCCGGTGAG 15654 29 100.0 32 ............................. GCGATAGCACTGTGAGCGGCGCGAATGACGCT 15715 29 100.0 32 ............................. CGTGTTCCGGTGGGCTTCGCCCAGCGTTTCGC 15776 29 100.0 32 ............................. GCGCCAGCGTCAGCATCGGCCAGAACGGTGAA 15837 29 100.0 32 ............................. GCTGCGCGGGCAGCGGCGTCCAGTGTGTGTGG 15898 29 100.0 32 ............................. CCGATATGGCGAACATCTTGGCGCATCTAAGC 15959 29 100.0 32 ............................. TGTCCCGTTGGCGGCCAGCGCCGCGATGAATA 16020 29 100.0 32 ............................. GCGACGGGTTTCTACCTGCGCGGCCTGCCGAT 16081 29 100.0 32 ............................. TTGCAGACGTTCACGTTTGACGGGCGGTTTGC 16142 29 100.0 32 ............................. TCGCGCATCAGCCCGCGATTGCGCAGACGAAT 16203 29 100.0 32 ............................. GCGGTAAGACGTGGATATTGCGGCGCTAGGCT 16264 29 100.0 32 ............................. CGCGACCGAGCGACATTGCCACCCCCATAGGC 16325 29 96.6 32 ............................T GACCGGCATTGCCTCTGATGACGGCGCGCTGA 16386 29 96.6 32 ........T.................... GTGAAACAGCTTGGCAAAGCTGACCGGGAGCC 16447 29 100.0 32 ............................. AAATCACGCCCGCTCAAGATCGTGTCTGCGGC 16508 29 100.0 32 ............................. CCGACATGGCCACCAGAGCCACGCTCGAACAC 16569 29 100.0 32 ............................. TCGCGAGCGCATGGACGCAGTGGGATATCGGC 16630 29 100.0 32 ............................. CCTGATGCCGACCGACGACAAACCGGACGCCA 16691 29 100.0 32 ............................. GATGCGGGGCTGCCGGTGCGGCGGGTGGCCAT 16752 29 96.6 32 ............................T TCGGACGTGCCGATGGCGGCGGCAAGGGCGGC 16813 29 100.0 32 ............................. ATGGTCGAACTTTACGCAATGGAGAATGCGAA 16874 29 100.0 32 ............................. CCATGTTCGCCAAGCGGCATCCCAGTCCCGGA 16935 29 100.0 32 ............................. GATGGCCTTGCGATGGGCTGAACCGACGCTGC 16996 29 100.0 32 ............................. GATGTAGGTCGGTGTCCCGGTCAACTCGCTGT 17057 29 100.0 32 ............................. CCGTGTCCGCGGTCTGGCGCCACGCCTCAGAT 17118 29 100.0 32 ............................. CACCCCGATCTAGCGGCAGAGGTTGGCGCCTA 17179 29 100.0 32 ............................. TGGGCAATCATGTCGCGCCTTGAGGGCGGGGC 17240 29 100.0 32 ............................. CTCGTTTGTCGGCCATGTGTTGCTGCCCACAC 17301 29 96.6 32 ..................A.......... GAGGCGTAATGGACTGGCACGACGCGGCACAT 17362 29 100.0 32 ............................. CCTATGCCGGGAATGACACGACCGGCTTCAAC 17423 29 100.0 32 ............................. CCCTCTGCGCGCAGAGCATGCGCGACGATGGG 17484 29 100.0 32 ............................. ACAATGACCACGCAGATCCGCAGCATCGGCGA 17545 29 100.0 32 ............................. GATGATGCCACTCTTGCCGGTCGTCGCCATGC 17606 29 100.0 32 ............................. CCTGCCGATGGACATCGCGCGCGAGCCGCGTT 17667 29 100.0 32 ............................. CGCGTCAACTATGGCATTGCGTTGGGGGTCTG 17728 29 100.0 32 ............................. CGGAATGCCATTCCCAGACATTGGCTTTACAC 17789 29 96.6 32 ............................T TCCGCATGATCCGTCTCAATATCGCGTCCGGT 17850 29 100.0 32 ............................. CTGCACTGGCCGCCGAAAAGCGGCGCGTGTCC 17911 29 96.6 32 .......................A..... CCGGTCAGCCGTGGCTTTCAGTCGCGCGTAAT 17972 29 100.0 32 ............................. ACGGTGCAGGGCGGCGGTCGCGGCGATAAAAC 18033 29 100.0 32 ............................. CGGAGCGGGTCGACGCGCGGGCGCTGTGATGT 18094 29 100.0 32 ............................. CGATGCGGCATCTCCGGCTATCCTATTGCGTC 18155 29 93.1 0 .........................G.T. | ========== ====== ====== ====== ============================= ================================ ================== 61 29 99.4 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CTGGCGAAGATCATCCCGCGCATCGAGGAGGTGCTGTCGGCGGGCGATCTGCCCCGGCCCGACCCGCCGCCCGAGGCGCTTGGCCCCGCGTTTGACGATGGGGCGCCCTCGGGAGATGAGGGGCATCGGGGATGATGGTGGTGGTGGTCTCGAACGCCCCGCCGCGACTGCGCGGGCGCCTCGCCGCCTGGCTGCTGGAGGTGCGGGCGGGTGTCTATGTGGGCGACTATTCCACCCGCACGCGCGACCGGATCTGGGCCGAGGTGGTGACCTATATCGAAGAGGGCGACGCGGTGATGGCCTGGACCGCCCCGACCGATCAGGGCTTTGACTTTGCGACGACGGGCCGAAACCGAAGGATGCCCGCGGATTTCGACGGTCTGAAACTGGTCAGCTTTCACCCCGCGAAACCTGACTGAGCAGACCGGGCCGGGGAGCAAAAAATCGGTAAGTTCTTTGACATCGTAATTATGAAGTGAAATCAGATCCTTCTGGGAAGG # Right flank : ACTGCGCAGGAGGGCCTTCCAGGAAATCTGGCCGGGATCTATTCGGGGCGGACGGTCTCTGTGGCCCTGCCGCGATCGATGAATGACCTCTGGCGCATGAAATTCGCGGTCTGCCCGGCCCTCATCCAGTTCAGACAGGATTTCGAACTGTCGGTGTCGAAGATGGTCACCGTCTCGCCGCGGGCCATCGCGGCTGAGGCGAGGGCACGGCAAAGCGTGCTTTTGCCTGATCCGCCCTTCCTGTTCATCACCAGCACAACCCGTATTCCGTATTCCATCGCACCTTTCCCACATTCCACAGGCTCTGTTGCACAAATCGGGTTATGGCCGAGGTTCCCCTTTCCCCGGACGGACTTATCCCACAGCTTCCGTGACGGGTATGCCGAGCGCGGTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 282718-281842 **** Predicted by CRISPRDetect 2.4 *** >NZ_QBKP01000005.1 Gemmobacter caeni strain DSM 21823 Ga0196851_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 282717 29 96.6 32 ............................G TCGAGACCTGTAAGGACAAGCCGTCTGGCAAT 282656 29 100.0 32 ............................. GCGATTTGATCGAGGACCCGACGCTTGACGAC 282595 29 100.0 32 ............................. CCCGGTGCGGGCGCGTTCTCGATCACCGATTT 282534 29 100.0 32 ............................. CGGGCGCTGGTCAGCTGGCTCGGCTCGGTCGA 282473 29 100.0 26 ............................. CTTGCCCGACGATTATGGCTGGCGGT 282418 29 100.0 32 ............................. CATAGCTTTCGGCTTGGTGTCCTTGACTGTCA 282357 29 100.0 32 ............................. CGTCGCGGCCAGCATGAGCCAGATCGCCCAGC 282296 29 100.0 32 ............................. CGGCAGCAGCGTGACCTTGATATGGCCCTGCA 282235 29 100.0 31 ............................. CAGGTGGGAACGTGTAGCCCGGGCATGCCTT 282175 29 100.0 32 ............................. ATCGCATGAAAATGTGCGCGGCCCTTCAAATC 282114 29 100.0 32 ............................. ACGCATCCCGCAGTATGTCGCCAGGCGCAGAG 282053 29 100.0 32 ............................. TGCCGAGCTTGCGACTTGCTCCCCGAACAGCA 281992 29 100.0 32 ............................. GCGAAATTCTGGCCGACAGACGCATGGGCTGG 281931 29 100.0 32 ............................. CGCATTCCAGTCGCGTCGCTTCGGCTGGTCTT 281870 29 89.7 0 ......................C.A.T.. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GGCTCCCCCGCATACGCGGGGATAGACCC # Left flank : AGGGTCAGATGGATCACCCCGTCGATCCGGGTGACCTCCGAGGCCAGCCAGTCGCAGTTCACCGCTTCACACGGCAGGACGGCGCCCTCGGGCAAGGGGCCGAAGTCGAGATCCGCACCGTCGATGGTCAGGACATCGCCCTGCCGGGACAGGGTGAGGGCGGCATCGGAGCGGAAGGGCGAGAACGAGATTTTCATGATGGGTCTCCTCAGAACCAGCGGCCGATGGTGAGCAGCCTGAATTGCTGTCCGGTGGGCGAGCCCGCCAAGACCATTGTGGATGCGGATGGCATCTTGCTCGTAAAACGAAAGTAATATCACGCCAACTCGCCTTCATGCTCTTTGACATTCGTGGAAATACAGAGATATAGCTCAAAG # Right flank : GCAGGAATCTAGGCTTTGCGCGCCCAGGCCCCTTCCGGAACGTCGTCGAGTGCGGTGCGCCAGGCGTCGGTGCGTTCGACCGGCAGCGCCGCCAGTTGCAGCGCCGCCTCCGCCACGGCCGCCAGATGGGCGGCGCGGGCCTCGGGCGAGGTGCGGGGCACGCCGTAGGCCACCTGCAGGGGGGCCACCTCGAAGCCCATGTATTCCAGCGCCAGCTTGCGGACCGGCATCAGCAGCGGATCAATCGGGCCGTAGACGCCGTTCTCAGAGAACCGTTCGGGTGTGCCGCCGGTGGTGACGCTGATCATCGCGCGGCGGCCCCGGAACAGGCCGGTTTCGAAGCGTCGTCCGTCCACATAGGCAAAGCCGTAGCTCAGCACCCGGTCGATCCAGCCCTTCATCAGTGCCGGCGGGCCACCCCACCAGACCGGGAACTGCAGGATCACGTTGTCAGCTTCGGCCACGCGTGCCTGCTCGCGGCGGATGTCCTCGGCGTAGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCCCCCGCATACGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //