Array 1 338217-339062 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIW01000002.1 Thermococcus thioreducens strain OGL-20P, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 338217 30 100.0 37 .............................. TCAAGTCTTTGTATGGTATACCATTGAAATGATAACT 338284 30 100.0 36 .............................. TAGAATTCTCGTTAGACCACCGATGAGCAGAAAAGC 338350 30 100.0 36 .............................. GAACCCCACAATCGTCACAGTAACCTCGAACGTGAA 338416 30 100.0 36 .............................. TCAACCACTCTCGGCATTCTTCAAGGTTCATGTTCC 338482 30 100.0 37 .............................. TTTTCACTAGACCCAAGTGCATGAGCCTAGCCACCGC 338549 30 100.0 39 .............................. CAGGTGCTATTAGCGGTTTCTTTTCAATCATGCGCTCCC 338618 30 100.0 38 .............................. ATAACCACGCCGGTTTATGCACTTTAGCGGTGATTGCT 338686 30 100.0 42 .............................. TATTTTAGGTTCTCGTACAAACTTCAAAAACCCCAAATTCAG 338758 30 100.0 36 .............................. GTAGAATCAGCGCGACAACTCCCGAGACATGCGGCG 338824 30 100.0 37 .............................. ACTATCGTCGGCCGCGTGGTTGAGAAAAAGGCTGTTC 338891 30 96.7 36 .............................C GCCGAGGAGCTGTAACGGGCTGGGTTCGATGCCCCA 338957 30 83.3 46 ...G...............G.....CCT.. GTGTTTCATGCGTTTAAGTTCGAGGGGGTGGGGGACGGAACGTCCC 339033 30 86.7 0 CCCG.......................... | ========== ====== ====== ====== ============================== ============================================== ================== 13 30 97.4 38 GTTCCAATAAGACTCTAGGAGAATTGAAAG # Left flank : AATCGGAGCTCAGAAATTTAACGGTTTCGGCTCTATCACGCCCAGGTTTTTCCAATTGGGTTTATCGTTCTCATCTGCTTGTTTGACTCAAAAAGCTCCCCTCAGATGGCCCAAGAAACCAAATTTTTGTTCCCTAATTATTGCCACTTTTTGTTCCATTTCTCCCATCATACTGTAACGAAATTTTTTCGAGATGTCTGGTTGAGGAAGTACTGGATCCATTAAGGCTTGAACCCTGCTAAAACTGTTTATTCTCCTATTTAATATCTGCTAAATATCGCGTTGAGGCTTTAAGGCCCCCTGGACATTCGGGAGATCCCTTGAACCTTTTTGTTCATGGCATCTTTGGAGTCCCCTCAAGGGTTTTTGCCAATATTTTCCCCGGCAAAATCTCGAATTTTGAGCCTTCTCATGACTCCCTTTCCAGCGGTTTCCAGAAAGACTTAAATATTGGGAGTGTTTTAGAGGCTTATTGGGCAAATGGGAGGAAATTCCAGCCT # Right flank : GTTGAGAAGCCCGGCAGGGAGGGTCATCTGAGCAGCATACCAAAGGAGCGCTCGAAGATCTCGCCGTGGCCGCCAAAGGCCTCGAACATCCGCTCCGAGTACGCTGATGAGGCGACCCTGAGGAACTCCCGCAGGTTCGTCTGTATCTCGTCGGTCATGGGGACGTGGAGGGGCATAGGTTCGTAGTAGTCGAGGCCCTTCATGAGACCCGTTGAGAAGTACCAGAGCGTTTTTCTGACTTTCCTCCCCTTCACCACCGAGAAACTTGCACCCGAGCAGTGAAAGGCCGCGTGAAGCACGATTATTTTTTCTATCTCAACGCCCTTCCTGAGGAGCCTCTTCCGCTCTGAATCGCCCGAAAGATCCGTTATCCTGTAGCCGCTCCTCGTCTGGGTGTCGTGAGGGATCCGCAGGTGGTGAACAATCTCAACCTTAGGGTCATAGACTAGGACATCGGTTCCCCCCACTACAAAAAGCTTTCCGTCCCGGACCTCTATAAC # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 186888-187317 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIW01000001.1 Thermococcus thioreducens strain OGL-20P, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 186888 30 100.0 37 .............................. TTATGTCCCACGTCACTGGAGCTGTAGCGGTGTTGAG 186955 30 100.0 37 .............................. AAGACAAACACTGGAAACCAGAGCGCAAACCTCGCTC 187022 30 100.0 36 .............................. GAACCTCCCCACGTCCTCGGTGCTGATGCTAACACT 187088 30 100.0 36 .............................. CCGAAAACTTTTTAAGGAGAAGTGCGCTAACGGAGG 187154 30 100.0 38 .............................. GTAATTACAAAAAGCCTTTTCCATCTACCTTTTTCAGT 187222 30 100.0 36 .............................. ACAAAATCAAGGGCGACGTTATAGAAGCCCTCCACA 187288 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GTCTGGAGGCTGAGGGAGCTTGGATTTGACGTTCTATCACGCTGAGAGAATTTATTTTTCGGATATCTCTCCTCAGAGGGAGCAATTTCTAAAACTCCGCAGGTGAGCCTCTCGGGAAATCACTTTTTATGGTTCCGAGGGTATAACTTATTGTCGCTATTTTAAGCATTGATTGTAACGAAATTTCTTCGAGAATCATGACAGGGGAGGAGCAGGGCTCGAAAACGCCGGCAACTTGTCAAAACTGGATATTTTGGATTTTAAAATATTAATATCGCCGTTTTCGGCGTTTGGACGTATCACGGTGCTCGGGAAATCACATGGACTTTTCTGTTCACTGAACGTTTGCAGTCTCTTGGACTCCCATTTAACCCTTCCGAGCTCTCTGGCCTCACCGTTTCAGGCATTATGAGAGTCCCTTTTCTATCGGTTTCCAGAAAGGCTTAAATATTGGGGGTGTTTTAGAGGCTTATTGGGCAAATGGGAGGAAATTCCAGCCT # Right flank : GTTTAGGTGTCCCCGGTGCGGTTCCCTCCTTGATGTGGGTTGCAATAAGACTCTAGGAGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 188450-188615 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIW01000001.1 Thermococcus thioreducens strain OGL-20P, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================== ====================================================== ================== 188450 22 100.0 46 ...................... GAAAGTGCCTTAGTAGCATGGGCTGGGGCGAAAACCTAGGTGAGTT 188518 22 95.5 54 ................G..... CCTAGGTGTTTCATGCGTTTAAGTTCGAGGGGGTGGGGGACGGAACGTCCCCCC 188594 22 100.0 0 ...................... | ========== ====== ====== ====== ====================== ====================================================== ================== 3 22 98.5 50 GCAATAAGACTCTAGGAGAATT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTGTT # Right flank : TGAAAGCAAACTTACAATAACTCCCCGAACAGCAGGTCTTCCTTTTTTCCTCCCGCCTTCTTGAAAACCCTCTCGCTCCAGGAGACGCTCCCAACGCCCCTTGGCCTGTGGGCATCGCTCGCGAAGGCCAGCTTTACGCCGCGCTTTATGCACTCCCTTATGAAGTCAGTGTCGGGAACACGGTAGCGGGAGCTTATCTCGAAGGCCTTTCCGTTGGCCTCTGCCAGATCGAGAACCTCCTCCAGCTCCTCCATTGATGGATACCCTATGTGGGGAAAGTTTGCACCGAAGTGCCCTATGACCGTCACGTTCTCATCGAGAAGGGCCAGCTTCACAAGCCCGATGTACTGGCTCGGGCTCTCCAGCCACTCGTGGACGCTGGCTATCACGTAGTCGAGCTTTTTCGCCATGACGTCCGGAACATCGACTCCTCCGGATGTTATGTTGCCCTCAACCCCTGCCAGCACCGTTATATCCGTCTCCCCTCCCCACCGCTTTAT # Questionable array : NO Score: 4.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:-0.25, 7:-0.59, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAATAAGACTCTAGGAGAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //