Array 1 199-1689 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJW01000085.1 Flavobacterium psychrophilum strain FPG87 Contig_84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 199 46 91.3 30 T.G..T...G.................................... TAACAATAGATCAATACGGTAGAACCGTTG 275 46 100.0 30 .............................................. CAATAATCAAATCTTTTATATTGATTTCAG 351 46 100.0 29 .............................................. TAGCGTTTAAATAGGTGCTAACGTTTCGC 426 46 100.0 30 .............................................. TCAGTATTTGCAATGTTTTATCAAATGGCA 502 46 100.0 30 .............................................. GCAGGGGACAATGTGCATAGTTCGGTTGCT 578 46 100.0 30 .............................................. GAAGTCCTCAGTTGCTTCAATCGAATTACC 654 46 100.0 30 .............................................. ATCCATCTCTATTTTTGTATTCATCTACAA 730 46 100.0 30 .............................................. CGTTTATTTTTTCATAGTCCTGTTCGGCTT 806 46 100.0 31 .............................................. TTGGCAATCCTATAAATGAATCTGTTTGGCG 883 46 100.0 30 .............................................. ACTAACGGATACCAATTACATCGATAATGT 959 46 100.0 30 .............................................. GAGGTGCTTCGGATGAAAAACAATAATTAC 1035 46 100.0 30 .............................................. GAAGGAGATACATTCTTAATTGAAGATTTT 1111 46 100.0 30 .............................................. AAGCGCACAACTTGCAATAGGCGTGATTAG 1187 46 100.0 30 .............................................. TACGTTGCTGTTTTAATTCAACGCTTTCTT 1263 46 100.0 30 .............................................. CTTATAAAGGCGCAAGAGTGGTACAAGGTA 1339 46 100.0 30 .............................................. CAAATGGGACAGCGGATTTGTTTATGCACA 1415 46 100.0 29 .............................................. TTAATCAAGTTTTTTTAAGAAAAAAAGTA 1490 46 100.0 30 .............................................. AAAGAGCTAATACAATTACACACAAAAGAA 1566 46 100.0 30 .............................................. GAAGGAGATACATTCTTAATTGAAGATTTT 1642 46 91.3 0 ...................................G..C....CG. | C,T [1679,1684] ========== ====== ====== ====== ============================================== =============================== ================== 20 46 99.1 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : GTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCAAATGTTT # Right flank : AAAGTGTGTAAGTTAAAAAGTTAGGCTTGGATTTTATAATCTGAGCCTTTTGTCAAATATAAGATTAAATTGATTTAAAACAATACCCCAATTTTGTATTGGCATTTATTTTAGCCCCTTAATAAATCGGAGTGATATTTTAAATTTCAAATAGTACATTTGAGATATGAAATACAAGAAATGGAGCTTAGAAGAAAAGCTAGAAATTCTATGCTCTTCAGAAGAATTAGGAGTTGTTGAAACCTGCCGCAAATACAGCGTTAGCACTGGCACTTTGTATAGCTGGAAGAAGAAACATGAGAAGCAGGGAGAAGCTGGTTTAAAAGTAACTTATGATACTAGTAGTAAAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 230-6339 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJW01000071.1 Flavobacterium psychrophilum strain FPG87 Contig_71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 230 46 84.8 30 TGC.G...G..TC................................. ACACCCCATTTGCTGTAACGCAAGTTTTCG T [234] 307 46 100.0 30 .............................................. TGCCGAATCAATATTTAAAATAGCTGTTAT 383 46 100.0 30 .............................................. ACAAGGCATAACAGTCGTTTCGCTCAATGT 459 46 100.0 30 .............................................. TAATAACAACAGATGAGCAGTACCCGCAAA 535 46 100.0 30 .............................................. ACAAGGCATAACAGTCGTTTCGCTCAATGT 611 46 100.0 29 .............................................. TATTACGCTATCTAATCCCGAACGTGTCG 686 46 100.0 30 .............................................. TTACAATTTTAGATTTTACCTCCGAAACAT 762 46 100.0 30 .............................................. CCTAATCTTTAAATTTAAAACAATGAATAC 838 46 100.0 29 .............................................. CAGATGTTTGCCAGCAGTTCGGCTTCCGT 913 46 100.0 30 .............................................. CTTGACAGATATAGAACGTTACTCGTTGCT 989 46 100.0 30 .............................................. AGTTGAGCAAACTTACCTGCAACGTTCCGC 1065 46 100.0 30 .............................................. TAAATCTCTATTGTATTGTTAGAAAATGGG 1141 46 100.0 30 .............................................. CTTGTCTTTTTTCTTTACCAGTTTTTTTGT 1217 46 100.0 29 .............................................. TTCGAATGATAATTACCGCAATTCTCGCA 1292 46 100.0 30 .............................................. ATAAAATCAATACTTATGATTACCACATTA 1368 46 100.0 30 .............................................. TACAAAAAACGTAGGTAACTATCCATATAA 1444 46 100.0 29 .............................................. AAGTTAGCGAAAACAACAGACGGCGAACT 1519 46 100.0 30 .............................................. ACCAGTAGCCGTTTATATCCATGTTTTTTG 1595 46 100.0 29 .............................................. TTTTTACTTGCATGTTAATTTTATTAATG 1670 46 100.0 30 .............................................. TGTGATTTCGTTTTGCGCTCTGAATCCTAC 1746 46 100.0 30 .............................................. GTATCCAGCGGTTAAGATACCAGCGTTTAT 1822 46 100.0 30 .............................................. TTACGCGGTGAGTGGTTGCTGCATAGTCCA 1898 46 100.0 29 .............................................. CCGCATGATTATTTAAGCAAGAGCGACTT 1973 46 100.0 30 .............................................. TGCAAAGGCGAACTGTCAACTGACGAAATT 2049 46 100.0 29 .............................................. TTTGATGTAGCTAAAATTGCCATAATGTA 2124 46 100.0 30 .............................................. TTAGGTTTAGATTTGATTTTGCGTACTCCT 2200 46 100.0 30 .............................................. GAGTAAGCGCACCACCGTATGGAGTAACAT 2276 46 100.0 30 .............................................. ATCGGGTCGCATTCGGATAAATCGGTAGGT 2352 46 100.0 30 .............................................. TAGTAGTATTTTTTGCTGTTAATTGGCTCG 2428 46 100.0 30 .............................................. AACTGCAAACCATCTTCAGGCTTCACTGCT 2504 46 100.0 30 .............................................. ATTAAAATGTAGATTAACGCACACTTTTGC 2580 46 100.0 30 .............................................. ATTAAAATGTAGATTAACGCACACTTTTGC 2656 46 100.0 30 .............................................. CAGTCAAGTACGAGATAAAAACGGATTACT 2732 46 100.0 30 .............................................. CGAGTGCATTATAAATTCGGGGTGGTTCTT 2808 46 100.0 30 .............................................. AGGCTCAAGTTATACCGATATGGCATTTAA 2884 46 100.0 29 .............................................. TATTGAATAAAATTCTGTTGGTGTTAATT 2959 46 100.0 30 .............................................. CCTAGGTGGTTAATTGATGCGGTTTGTACC 3035 46 100.0 30 .............................................. TCGGTGAGGAAAGTGTTCGTTCTGTGGCTG 3111 46 100.0 29 .............................................. TTTTTACTTGCATGTTAATTTTATTAATG 3186 46 100.0 30 .............................................. TCATCTCTTTGCAGTACTTTAAATAATCCT 3262 46 100.0 30 .............................................. GTTAGCTTTAGCTTTTAATTTATTCGCATT 3338 46 100.0 30 .............................................. AGATAGTAGCAAATGTTAAATAAATAAAAA 3414 46 100.0 30 .............................................. AGGCTCTAAATTCTAATTCGCAATCATCAC 3490 46 100.0 30 .............................................. TTGTTTACCCCGCCCTCGGTGTTCTCGGTG 3566 46 100.0 30 .............................................. TAAAGCGTTAGGTGCTGCGACAGCGGTTGC 3642 46 100.0 30 .............................................. CTTGTGAAGGCGCAAGATTGGTATAAAGTT 3718 46 100.0 30 .............................................. TTTGTCGGTGTCATTTGGTTTATGACCGCC 3794 46 100.0 30 .............................................. ACACGTTCTCAAATGTTAAAACTTTAATTT 3870 46 100.0 29 .............................................. TATTGGGAAACTTCCGTTTTCATCTACAG 3945 46 100.0 30 .............................................. TTGTACTTGCTATTCGCATTTAACAATTCC 4021 46 100.0 30 .............................................. TTACGGAACTAGGACAAAACAACACAGAAA 4097 46 100.0 30 .............................................. TGATTTGTGTTGATGAAATATTAAATACAG 4173 46 100.0 29 .............................................. TTGATGAGCAGTATTATTTAGGCATTACA 4248 46 100.0 30 .............................................. GGACATAGCCCTATTAACAGGGCTAGACGG 4324 46 100.0 30 .............................................. AAAATCAAAAATTGACAATCTAAATTTTAC 4400 46 100.0 30 .............................................. AAAGGTATGATTTAACTATTAACGATTTGG 4476 46 100.0 30 .............................................. ATAAATTAATAACTAAAGCCTTAATTGCTA 4552 46 100.0 30 .............................................. TTGTTTACCCCGCCCTCGGTGTTTTCAGTA 4628 46 100.0 30 .............................................. AAAGGTATGATTTAACAATTAACGACCTTG 4704 46 100.0 30 .............................................. TTCAAAATCTCCATGAAGTTTACAAGTAAT 4780 46 100.0 30 .............................................. CCAGTTGAAGACACTTTGTCTGTATCAACT 4856 46 100.0 29 .............................................. ATCCATTTTAATAGTATGTAACTGTTTTT 4931 46 100.0 30 .............................................. CTGACGGCAAACACGTGTTATAAGCAGGCT 5007 46 100.0 29 .............................................. AAAATTCAAATATAGAAAGAGCGATTTTT 5082 46 100.0 30 .............................................. AAAAATAAAAACATGATGCACGTTCGTGGA 5158 46 100.0 30 .............................................. AGAGCTTTTGCAAAATCTAGCAAGGCTATG 5234 46 100.0 30 .............................................. CACAAACAAATGAGGTTCCAACAAGTCTCG 5310 46 100.0 30 .............................................. TTCGGCACCCTTACTGAATACCAAAATGTA 5386 46 100.0 29 .............................................. ATAGAAATATTAGATATGATGCTTAGTCC 5461 46 100.0 30 .............................................. AGAGTGCGATGAGTTATATCGCAACAATAA 5537 46 100.0 30 .............................................. TCTCAAATTTAAAGGAGTGTAATTGCGTGT 5613 46 100.0 30 .............................................. AGTGCGTGTGCTAATTCTTCATCTTTAATA 5689 46 100.0 29 .............................................. GAATAACTACGTATTTAATCCAAAAGAGT 5764 46 100.0 30 .............................................. TGGTTAATAATTCTTTGTTTTGTTTCTGTA 5840 46 100.0 29 .............................................. CGTATCGGAATACGTTAAGATATTCAATA 5915 46 100.0 30 .............................................. TATGATTTCATTTTGCGCTCTGAAGCCTAC 5991 46 100.0 29 .............................................. AAAGACAATTCAACGCAATACCTTATCTA 6066 46 100.0 30 .............................................. GCGATGGAACATATGACGATTGGGTAGAGA 6142 46 100.0 30 .............................................. ATTGCTTCTCTTATTTTGATTAAAAGAATA 6218 46 100.0 30 .............................................. ACAGCATCTTCTTTTCAATTAGCATTCAGA 6294 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 81 46 99.8 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : ATTTAATAGAAAATCTCAATGGAAAAATTAGAAAATACACTAAAAATAAAATGTCATTCCCTACTGATGATGCGGTTCTAAAATCAGTTTATTTAGCTTTAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGCTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTGTGTACTTCGGCATTTTCTCTGCTGGCACAAAACCGCATATAGATCGAAAATTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTGGGCAGGTCAAAAAATACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 796-295 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIJW01000088.1 Flavobacterium psychrophilum strain FPG87 Contig_87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 795 46 100.0 30 .............................................. TATCATTAATAGTTTGTATTCGTTTGCGTA 719 46 100.0 30 .............................................. TACGTTGCTGTTTTAATTCAACGCTTTCTT 643 46 100.0 30 .............................................. CTTATAAAGGCGCAAGAGTGGTACAAGGTA 567 46 100.0 30 .............................................. CAAATGGGACAGCGGATTTGTTTATGCACA 491 46 100.0 29 .............................................. TTAATCAAGTTTTTTTAAGAAAAAAAGTA 416 46 100.0 30 .............................................. AAAGAGCTAATACAATTACACACAAAAGAA 340 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 7 46 100.0 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TCAAGTTCTGCTTCAAGCATATGTTCAACTGCTCGTTTGTGCATTTGTTTAAAAAATGAAGTTAAATCTTCTCCATTTTTAAAGGATTTGTAGAATTCCTTGTTGTTTAATAAGTTGTCTTTGTCTATCATAACTATGTAAATATATAAAATGTTAAAAAGTTATTTCCGAAAATTTTTGAGCTTTTTGAATTAGCTCAAATTTTCAGAATAACTTTTTAACTTACACACTTTGTGTTATACTGCCTTAGCTTATAATTACCAACAAGCGCACAACTTGCAATAGGCGTGATTA # Right flank : CGCTTTTGCCACGAAGCTAGATATTGCAATAGTTGTGAATTGCTTTCAAAATGGCAGTATAACACAAAGTGTGTAAGTTAAAAAGTTATTCTGAAAATTTGAGCTAATTCAAAAAGCTCAAAAATTTTCGGAAATAACTTTTTAACATTTTATATATTTACATAGTTATGATAGACAAAGACAACTTATTAAACAACAAGGAATTCTACAAATCCTTTAAAAATGGAGAAGATTTAACTTCATTTTTTAAACAAATGCACAAACGAGCAGTTGAACATATGCTTGAAGCAGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //