Array 1 98414-99292 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_023011.1 Haloarcula hispanica N601 plasmid pHH126, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence               	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	==============================	=====================================	==================
     98414	    30	 100.0	    37	..............................	TTGCTTTCTGCCATCAGTCATCGCCTCCGATAACGTT	
     98481	    30	 100.0	    36	..............................	GTCGAGAATCGCGTCTATATCCATCTGATCTGCCTG 	
     98547	    30	 100.0	    36	..............................	GAACGTCATTGCCGGCGGCCGGCGCGGACCTGCAGG 	
     98613	    30	 100.0	    36	..............................	ACCTCGTTGTCGTGATCGGCGGTGGTTCCGCCGAGA 	
     98679	    30	 100.0	    36	..............................	CCTATCTCGTCACAGAACCACGAGAGCCAGATCGGA 	
     98745	    30	 100.0	    35	..............................	GCGAGTAACTCAATACCAATGGCAACAACGCTACT  	
     98810	    30	 100.0	    35	..............................	CTCGGCGGGAGCATGAACAAGACCGCCGCGCTCGT  	
     98875	    30	 100.0	    35	..............................	TACACTGGCGGTCTGGCAACGGAGGAGTAATGCCG  	
     98940	    30	 100.0	    35	..............................	GCCATCGGTGGCTTCGTCGCCGGGTTGCTCTACCC  	
     99005	    30	 100.0	    33	..............................	TGTGACGGCTGTGGTGAGGTGGCGATGGCGCAA    	
     99068	    30	 100.0	    34	..............................	CTCGCCGCACTGGCTGGTCGCCAGACCCATCACA   	
     99132	    30	 100.0	    34	..............................	AAGTACACGAATCTGAACGTTACGGACTGGTCGA   	
     99196	    30	 100.0	    37	..............................	TCGGCACACACAGTCTTACTTCGCGCTGGTCGATAGA	
     99263	    30	  70.0	     0	.......C.....TT.T.AAA..C....A.	|                                    	
==========	======	======	======	==============================	=====================================	==================
        14	    30	  97.9	    35	GTTTCAGACGAACCCTCGTGGGGTTGAAGC	                                     	       

# Left flank :   TGAACGTACTGTTGAACACCCGACGCTCAACCGAAAAGTTAGCTATCAGTACCTGATGCGTCTCGAAGCATACAAACTGAAAAAGCATCTCCTCACCGGAGAAGCATACGACTCGTTCCAACGGTGGTGGTAAAATGTACGTGGTGATGGTATACGATTTGGAAGCGGATCGAACGCAGAAAGCGCTCAAAATTGGTCGGCGATATCTGACTCACGTACAGAACTCAGTTCTTGAAGGCGAAATCTCCGAGGGTGACCTTTCTAACCTCAAGAATGAGATTGATGATTTGCTGAAACCAGGTGAATCGACAATTATCTACGAGCTGTCTTCTGATACACTGCTCAACCGGACAGTCTACGGCGACGATCCAACTGAGGATCAGCGGTTTCTATAGTCGGTTTCCGTCGACCCCCCGGGGGGAAGCACCTTATTGATGGTCGACGGAAGGTCTTTACTGTGACCCGCCGTTAGCAGCCTTATGGCCCGTATATCGGGCATG
# Right flank :  CTACGTCAGTGCTCCTGCCGTCCAAAGGTAGTGCTTTCTACGGTCCCGTATAAACCGCACCTCCTCATATACTCAACCGTCGCCGCAGAAAGTATATACAAAACTGGAATCTAAACTTGCATCGTGGTAGCATCCCAAGACCCGCAACGATTCAATTGGCGTTGGAGTTTGTCCTAAACACACGATTGGCTAGAGATCCACGCCTGGACAGATATCATCAACGGAACCGTGACCGACCGGGCGATAAAGAATGTCGCCCTCGTAGAGATACGCCTACAAGTCCTGTGGCATCACTGCTTTCAAGGATAATAATCTGTGAGTTCTTCGATGAGTGAATGTCTCTGGGTTCTGTGTAAGCCAGAGCAAAGAGCCATTCTGGCATTTATTAGTATATATTTATTATCCGTGATCTCCTCGTATCTCTTTGATTGGGTGTGGATCGATGAAGACACTGAAACATCATCACCGTGGGCAGATTGGTGGGCTATCGTATTATGGGC

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTCAGACGAACCCTCGTGGGGTTGAAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.10,-5.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-B [Matched known repeat from this family],   
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