Array 1 413952-410245 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073368.1 Haloarcula sinaiiensis ATCC 33800 plasmid pHsi540, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 413951 30 100.0 35 .............................. AAGACGACGAACGTATCTGAACTGAAACAGCAGTA 413886 30 100.0 36 .............................. ACGATAAGCCCGATCTGCAACACGCCCATCGCCAAC 413820 30 100.0 36 .............................. GAAAATACGTTGTTCTCCGCCGCTGCGTCGAAGCTC 413754 30 100.0 35 .............................. TTCGTCGTGGCCCGCTGCTGGGAGCATCCCGAACT 413689 30 100.0 36 .............................. ACATTGAGCGGCCCGGACGCCCTCGACCGTCAAGCT 413623 30 100.0 38 .............................. AACGTCGCGTCGTGCGTCTGTGCTTGGACGTTGCGCGC 413555 30 100.0 38 .............................. AACGTCGCGTCGTGCGTCTGTGCTTGGACGTTGCGCGC 413487 30 100.0 34 .............................. AGCGTCAGTTCGCCCGCATGTAAGGTTGACCCGG 413423 30 100.0 36 .............................. ACTCGGGAGGGAGTCGACCCTCTCATCTCTCGGATA 413357 30 100.0 36 .............................. ACGGGCGGCCAGACCGAGTACGCCCACATCTACCTC 413291 30 100.0 36 .............................. AGATGACATGGACCGCGAAACCACCAAGACAAACGT 413225 30 100.0 37 .............................. GAACCACAGACGCGAAAAGACTTGCCCCACGGCCACA 413158 30 100.0 35 .............................. TCCTGTTGTGGCTGGGGTAGGTCTGGCCACTGGAC 413093 30 100.0 36 .............................. GGACGGCTCCACAGCCTCTGGAGTCCAGTCCATCCA 413027 30 100.0 35 .............................. GGAACTAACTCGGTAATCTCCGAATAGCTCATATC 412962 30 100.0 33 .............................. AGCACGACCGCTATCCTGTCCGGCAATGGTGCA 412899 30 100.0 35 .............................. AGGCGAAGCATCTATCGACACGCCTGACGGCAATG 412834 30 96.7 36 ............................A. GGGTACGGGGCGCAAATCCTCGCAACCGAAAACAAC 412768 30 100.0 36 .............................. GCGCCCTATCAGTTGCGGCCAGCCAGCCCGCTGACA 412702 30 100.0 36 .............................. TCGGAGACGTGGGGTAGGTTGCGTACGTCGTCATTG 412636 30 100.0 35 .............................. TTCCGAGCGGCGGCGCGGGCGGCGAGTTCCCCGTT 412571 30 100.0 39 .............................. AAGTTAAATCAAGAAGGTATGGACCCGTGGAAGGATAAC 412502 30 100.0 34 .............................. ACTTGCTCAATCAGGGACTGCGTTGGTATGGCCT 412438 30 100.0 37 .............................. GACCTGCTGAAAATGTCAAGCATCGTCGCCGGGACGC 412371 30 100.0 36 .............................. AAACACGCAAAGGAACAAGTCGGACACAACAAGCTC 412305 30 100.0 33 .............................. AGAGCGCGTGCTTCGTGTAGCGCTCTGGATGGA 412242 30 100.0 35 .............................. TTCGGCGCGATGACGCTGGACAACCTGACGCTACT 412177 30 100.0 35 .............................. TCGCCGGTCCTGAGCGGGCGCCATATTTTGAATAT 412112 30 100.0 36 .............................. GCTCTGTGTCATTGAATCTCGACCTCCTCAATCGCC 412046 30 100.0 36 .............................. GCTCTGTGTCATTGAATCTCGACCTCCTCAATCGCC 411980 30 100.0 36 .............................. GTCGAGCACTCCGTCCCCAGGGTCATGTGGACCGCG 411914 30 96.7 35 ............................A. CTGACGCGGGGGAGTGGCGGCGACGGCTGGATAGG 411849 30 100.0 35 .............................. GAGACGTGGGTCATGACAGAGGGCGTCAGCGACAA 411784 30 100.0 36 .............................. GGCGCGTTGCGACTGTGTTAATCGCTTCCAGCGCGT 411718 30 100.0 36 .............................. ATTGCCGATGGGTCAAGCTGGACACAGCTCGGGACG 411652 30 100.0 36 .............................. GAGGCCGAACTGTCCGACGAGTCGCTGGCCGAACAG 411586 30 100.0 36 .............................. ATGGGCGAGAAGGCCGGGTTCGACCCGGGACCGAGG 411520 30 100.0 35 .............................. TTAGTCCTCTCCGTTCATTGACTTAGCCACGCGGT 411455 30 100.0 35 .............................. GGGCGCGCGGACGGCGATACGCTGGCGTCCCTGCC 411390 30 100.0 35 .............................. GGTCCGAAGGGCTCCGGTAAGAGCACCATGTCCGC 411325 30 100.0 34 .............................. GGGTTCGAGGACTGCCACCCGGTTTATCGCTATC 411261 30 100.0 36 .............................. TATTCGAGTGCGTCGCCACCGCCAGCGGTGGGAACG 411195 30 100.0 33 .............................. AACATAGGAGGAGGGAGTAACGAATGCAACATG 411132 30 100.0 37 .............................. TCATCGAGGCCTTCGATGCGGATCGAGACGTCGTCAC 411065 30 100.0 35 .............................. GTGCTGGTAGCTCTGGCTTTGACTTTGACCGTCGC 411000 30 100.0 36 .............................. CACACTCCAATGAGCACAGTTGGCGGCGATAAACGA 410934 30 100.0 36 .............................. CACACTCCAATGAGCACAGTTGGCGGCGATAAACGA 410868 30 100.0 35 .............................. CGACGAACTGACCGAAGTGATTGAGGCGATTGAAG 410803 30 100.0 35 .............................. AGGAGTTAGATGAATGAGTCACGTCAACCCAGAAA 410738 30 100.0 35 .............................. GCGACGTCCGTATTCACGTGGGGACACACGCCGGA 410673 30 100.0 36 .............................. TGCTCGTCGACACCGTCTATGGTTGACTGCACGCTG 410607 30 100.0 37 .............................. GGGCTGCTTGAGCGTCTCGACCGCGGCCTGTATTATC 410540 30 100.0 35 .............................. CGACATAAAGGCAATGACCGCGTTTCTGAGGTAGA 410475 30 100.0 38 .............................. GAGTACCAGATAGACCTCGATGCGAAGGACTTGGAGGG 410407 30 100.0 37 .............................. AGTGGATAGGTTACAGCCGGTCAATCGTCGCTTCGGT 410340 30 100.0 36 .............................. AAGGTGCAGGAGACTGACGACCGAGTCATCTTCAGC 410274 30 90.0 0 ..................C.........TT | ========== ====== ====== ====== ============================== ======================================= ================== 57 30 99.7 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CGAAAAGTCAGCTTCAAGACCTTAGTTCAAACGGATGTCTATAGCTTGAAGAAGCATATTCTCACTGGAGAATCGTACCACCCAACGGAACGGTGGTGGTAAGATGCAGGTCATCGTCGTTTATGATGTCCCCGCCGATCGAACCCACATCTATCGAAAGCTACTTAGAAGACAACTTGAGCATCTTCAGAACTCCGTATTTTTTGGTGAACTAACTAAAGGTCAGGTGACCGCGCTGAAACAAGATCTGAAAAAGAAACTAGATGCTGATGATGAGGTGGTGGTTTTTGAATCCACGAATCCAGCTTCATTCGAAGTTACGACGTACGGTGACGCCGACGATCCCGGTAGCCGTTTTACCTGAGGCTGATCCCGACCTCTGGTAGACAAGTATCTTGTTTCAATGGACCCCCCGGGGGAACCACGGAAATTGAGGGTCGATGAAAAATACCATATCAAACCACGCTGTAGGGACACATTAGCCCCCCAAAACTGGGCGG # Right flank : AGCACCGGAAGTTACAATTCCTGAATGCCACGGCAAGTTAGACCCACAACGATTGTTTGACTCTTCCCACACCACTGTCTCCGGAGCAAAACGCCCTACGCCGGCCTGACCGGCGCGACATACTGACTCCTGACCTTGTCACCCTCGCGCCATTGCAAGTAGTAGTACTCGCGATCGTCGATACTCTTCACTGTCACCGTGCCCTTCGAGCGTGGTATTTCGGCCTGCTCGTAGGCGTCGGCTACTTTCTCGTCCCAGTCGTCCTCGTCGTTGGCCCATTCCTCGGGTGTGTCCACGCTGTTCTGGTCCTCGACCCCGTCATCGCTCTCTAGCAGCGCGGCCAGCTCGTCGACGGCGGCGATCGCGTCCTCGTGCGCATCGTGACCGTCCTGGCTGAGCCCCTCGACGTCAATGCGTTCCAGCGCCGACAGCGCTTGGTGGGCGTACTCCTCGTCGCTCATACGCTAACCAACACGACCGGGCAGAATAGCGTTTGTGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 423883-425295 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP073368.1 Haloarcula sinaiiensis ATCC 33800 plasmid pHsi540, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 423883 30 100.0 35 .............................. ACGGCCCCCGACTGGTCGCTGTTGCTGGCCTCGCC 423948 30 100.0 34 .............................. CTCCGAAGAGTGTCAAGACGCTAATCGCACCGGC 424012 30 100.0 36 .............................. AACGTCTCGAAACAGTACGCCAGTGACCGCAGCTCG 424078 30 100.0 36 .............................. ACCCACTGTATGGGTCATCCAAATCAATGTTACAGT 424144 30 100.0 34 .............................. CCATAGTATCGAATCCAGCGAACGAAACGATAGT 424208 30 100.0 36 .............................. GGGTCGTCGCCGACCAGTGTACCGATGAGGACCTCG 424274 30 100.0 35 .............................. ACACTGGGCCTGGAACCGAGCATCATCCAGCCCGT 424339 30 100.0 33 .............................. GCGTCATCTGGGACGCTGTCCTGTGCAACCAGT 424402 30 100.0 35 .............................. ACCTCGAAACACAGTTCACGGATATCCCGGGTCAC 424467 30 100.0 37 .............................. CCGTGTCTCGCCCGTCACCCAGTCCGCGGCCGCCAGC 424534 30 100.0 36 .............................. ACCGACCTCCATCGCCCGGTCGTCTTCTGGTAGACT 424600 30 100.0 36 .............................. AGGGAGATTTAATCGCTCTTAGACGGCATTGCATCG 424666 30 100.0 36 .............................. TCTTGTTCGATGTCAGCGCGCCAGCCAGCGCCACCG 424732 30 100.0 42 .............................. TTCAGCAAAGCCCGCCCCAAGGGCGTGCCCGCGCTGGTCGTG 424804 30 100.0 36 .............................. GCGACGCGACGAGGATGCGACTCGACCGCGATAACG 424870 30 100.0 37 .............................. CTCGGTCCGGACTCGACGGTCATCGGCTCCGGAGAGT 424937 30 100.0 37 .............................. TTAGATGTAAGCAACTCTTACGAGAGAGTAACCAGAA 425004 30 96.7 36 ................G............. AAGCCCGGCGATATGAAGGACTGGGAAGTTGACCAC 425070 30 100.0 35 .............................. AGGTCTCCCTCCTCGAACAGCGTGATGCTGCCAGT 425135 30 96.7 35 .......G...................... GATCAAGAAAACTATGATGCGTGGATACAATCAGA 425200 30 93.3 36 ...............C.....A........ CTTAAGCAACATCTCGGGACTACTCGTCGCGGGAGG 425266 30 93.3 0 .................C..........A. | ========== ====== ====== ====== ============================== ========================================== ================== 22 30 99.1 36 GTTTCAGACGAACCCATGTGGGATTGAAGC # Left flank : TGAGGTCATCGAGCACTTCCCGCCGAGGGGAGGCAATCCGGACATATCGACGGTCGCCTTCATTGATATGCCCCCATGGGAACACGTTGGAGAAGGCGAAACCAACGCCATGGTTGGTCTCGTGTGTTTCGGCGTATTTCTGATTGTCTTCGAGACCACGCCAAATCCGTCCGCGGAGCTTGTGATGATACCCTGTATCGTATTCCGCGTCAGCAATTGAGTCAAGTGCCAGCTCAATGCGCACGGGTCACATCACCCCCACCTTGCTACCAGTTTTTGGCATATACGCACCATTACCCTAACCACGCTTGTAATTTTCCCTGCATGTATGACATACAATGTTTGACAAGATGGTTACGGTCAGCGGGTTATTACGGCTCCTTACAGGGGTTACTAGCATTACCATCAACCCCCCGGGGGTGACACAAGAATTGATGGTCGATGGGAAATTCTTTGTGAAACCACCTTCAATAGGTACTCAGACCGCCTAATTGAGGCGG # Right flank : CATCGTCATGAAGCTCGGTCCGTTCATCACCGCTGTGGATGCTGGCTTCGATTCCCCAGTACTCGTCAAACGACAGAGCTAAAGCTAACAGACCGGGCAATGGCGTGCTCGCGAGCGTGCTGGCAAGCGGTTCAGTGTAGCCCTTCAGTCCGCGACAGTCCCTCCATCAGTCAGTGCCGACGGCTGCTGACCGCCACCGTAGGAGCCCAGCGTCGTCTCACCGCTGTCAGCAAGCTTCGAGTCGCCATCGGCGTTCGCGAAGTGTCGAATCATCTGACCCATATCGGGGTGGTCGATTTCGAGTTCGGTCAGATTCAGGCGCAGCACCTGCTGTCTGTCTGGTTTGCCAGTCCCGATCCCGAAGTGCTCAGCGGCTTCTTGCATTATCTGATGCATCACTGGTCTCGATATCTCGTCGTCGAACACTGCCTCCCGAAGTTCTCGCTCGGGGAGCGTCACGTCCTTTGAGGACGTCGACATTGCGCGGCGGTGAAGACGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCATGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //