Array 1 49352-50711 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VCED01000003.1 Haemophilus seminalis strain SZY H1 Scaffold3, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     49352	    32	 100.0	    33	................................	AACTATGATCGTCATGATCATAGTAGCCGAAGA    	
     49417	    32	 100.0	    35	................................	TAGCTTATGAAGGCATAAAACAACAATTAATAGAG  	
     49484	    32	 100.0	    35	................................	TTGGTAACAATGGCCTCAGAGTAAGGATTATCGCA  	
     49551	    32	 100.0	    33	................................	CGTAAGTGATGGTTGAGCAAAGCGTAAGAAAAA    	
     49616	    32	 100.0	    33	................................	ACTACCCTGCTCAAGGTGTAAAAGATATAAATT    	
     49681	    32	 100.0	    35	................................	AGGGTCCGCAAAAGTTGCTGAAACCAAATCACTGA  	
     49748	    32	 100.0	    35	................................	TCTACCTCGATTTTCTTGACTGGCGATATTCAAAC  	
     49815	    32	 100.0	    34	................................	AAAGATATGTTAGTTTTGGAAGCCAATTACCCAA   	
     49881	    32	 100.0	    35	................................	AGTACGGTTTAATTTATCCTTTAGCTCAAAATCAA  	
     49948	    32	 100.0	    34	................................	AATCTTTCAAAAATATTGATTTTATGGAAAACAG   	
     50014	    32	 100.0	    34	................................	TCTTAATTCCTCATTTTCAGTTTTTAACATAGCT   	
     50080	    32	 100.0	    34	................................	CTTTTATTTATATCTTGTTTTATTTATTTAGGGG   	
     50146	    32	 100.0	    35	................................	TATTTTAACTTTCATCAAACCCGTTTAGGGCGTAA  	
     50213	    32	 100.0	    34	................................	CATTTAATGAATACGATATTTACGGCTTCGACGG   	
     50279	    32	 100.0	    34	................................	AAGTAGCACATACGAAGGGTCAAAAATTATTTGG   	
     50345	    32	 100.0	    37	................................	CCCCATTCAAACCCATAAAACCTAAAATCAACATTAA	
     50414	    32	 100.0	    34	................................	CCGCCAGTAACTCATTTAGCATTTGTTGATAGCG   	
     50480	    32	 100.0	    34	................................	CACTCAACGATGTCACTGAGGAGCAAATTAAAGC   	
     50546	    32	 100.0	    33	................................	TCGCAGTAGGTACTCAAAATTTGCTTTCCAGTG    	
     50611	    32	  96.9	    37	.....................C..........	ATTCAGCAAGGATTGTTTACCGTACGAGTAGGGCGAG	
     50680	    32	  75.0	     0	.T...........T..AA......A..T..GT	|                                    	
==========	======	======	======	================================	=====================================	==================
        21	    32	  98.7	    34	GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC	                                     	       

# Left flank :   TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGATGATCCAAATGGGCAAGCGCGATTGCGCCGCATTGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAGTGGGTCATATTGAAAAACAAACTGTTGGAAACCTACGACCCTACATGTGACAGTCTGCGTTTTTATCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAACATCATGGGGCAAAACCAGCAATAGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGAATAAGTTAATCTATTTGTATAACGGCGGTATGACCGTTATACTTATTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATACGCTGATTTTTCTTGCTTTTTTATGTAGAGA
# Right flank :  TGAGGATGAAAGAAGATAAATGACTATGTCAGTAAATAGATAAATTAATATTTAAATACAAAAGAGCGGTCAAAAATATGATAATTTTTGGCCGCTTTTGTTTATACGATTTTAATTTAACTAATTTAAAATATTAACCTGCTCTAAAAATTCTTCTTCTGTTAATACTGCAATATTTAGTTCCTGCGCTTTGGCTAGTTTAGAGCCAGCAGCGTCGCCTGCGATGACAAAGTCCGTTTTACTGGAAACAGAACCACTTACTTTTGCGCCTAGCTGCTGTAGTAATACTTTTGCTTCGTTGCGACCCATTTGAGTGAGGGTGCCAGTGAGGACGACGGTTTTATCTTTGAATAAGTTTTCACTGGCTTCTTTTACTTCCACTGTTTCCCAATGTACACCTTGTGCGATTAAATCATCAACAACGGCAACATTATGTGCTTCACGCCAGAATACAAAAATTCTGTTTGCTACAACTTCACCCACATCAGGCACTTGTTGAA

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-4.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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