Array 1 56067-54579 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQHU01000012.1 Neisseria meningitidis strain M23675 M23675_CHA4080A104_cleaned_ctg_9531, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56066 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 56000 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 55934 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 55868 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 55802 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 55736 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 55670 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 55604 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 55538 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 55472 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 55406 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 55340 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 55274 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 55208 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 55142 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 55076 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 55010 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 54944 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 54878 36 100.0 30 .................................... TGCTGAAATTATGGCAAGTATGGGGCAAAG 54812 36 100.0 30 .................................... TAGCAAACAAGGAATATTCAAAGTCCTTTA 54746 36 100.0 30 .................................... TAGCAAACAAGGAATATTCAAAGTCCTTTA 54680 36 100.0 30 .................................... CGGCAATGCGGCGGCTGTGTTGGTTGGCGA 54614 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //