Array 1 1049-349 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTR01000004.1 Hyphomicrobium sulfonivorans strain WDL6 contig_133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1048 29 100.0 32 ............................. GTCAGGGTGCCGCCATTGCTTGCCCCAATTTT 987 29 100.0 32 ............................. ATTTCGCGGATCGCTTTGATCCGGGGCTTCTT 926 29 100.0 32 ............................. GCCGCACGCATCGCATACGACGCCATGCCGCC 865 29 100.0 32 ............................. AATACTACGTCGTTCAGGCCGGGATTGCTGTT 804 29 96.6 32 .............G............... CCTGTCTATCCGGAGTACAACGACGAAACGTT 743 29 93.1 32 .............G..............A GTTTGACTTCGACGTTGGGGATTGCCGCCTCT 682 29 100.0 32 ............................. ACGCCGCCGATCTCGTTGTCGAGAAGATCGTC 621 29 100.0 32 ............................. TCGGCTATAGCGGTACGGGTCAGAGTAGTCTC 560 29 96.6 32 .........A................... AAACGCCTGCCACCCTACTTCGCCTGGCGCGA 499 29 100.0 32 ............................. TGATTTGGATAGAAGCCGCCAATTGGGATTGA 438 29 100.0 32 ............................. CCTCATGATCGACTTGCGCCCGGCGGCTATCA 377 29 93.1 0 .............G..............A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGTTCCCCGCACACGCGGGGCTGAACCG # Left flank : CATCATTCCTGACATCGGTGAGGTCTTGGCGGCTGGCGGACTAAATCAGCCTTCGGACGCTCCTGAGGCAGCAGATCCCGCAATTCCGGCCGAGGAGCCGTCTGGCGATGATGGTCATCGTGGTTGAGAACGCCCCGCCACGCTTGCGCGGTCGACTTGCATTGTGGCTCGCCGAGATCCGCGCCGGTGTCTACGTCGGCGTTTTCAGTGCGCGCGTTCGCGAGCGCATCTGGGAGGAAGTTCGGATGCTGATCGGCGACGGCAATGCGGTCATTGTCTGGTCAGCGTCAACCGATTCCGGTTTTGCATTTGATTCAATCGGCGGGAACCGCCGTGAGCCCGCAGATATCGATGGCCTGACGGTTGTCCGCTTCAAGCCGCCAACGGAGCCACACCCCGCCTAACATGCAAGCCGGGGCCCTATGAATGAACTTCGTTCAATTCGGTGGCGTTCTTTGACATTTGAATCATCGTGATATTCCATGCCGTTACTAGGAAGA # Right flank : ACTCTCAATCTCGGCCAACGGGCACTCGTTCAAGTGTGTGCGCTTCGCACAGGACTTCGGCGCACCGACCTGGCTGACCGGAGCCCCGTCGACCTTCACCGCGTGGATCGTCCGAACTTCTGGTACGAATTCCTCGGCGATCCGAAGACAAAGTTTTCGTCTGCACCGGCTTCATCCCGTTCGCAGCCGACATGGGCGGCACGACATTCGAAAGCAACACCGGCTTCTCAACCGACATCGGCGATGACGCTGCCATCTACGCCTACGCATCGTATCTCGTCTGCATCGGCGAACACGCCGACGGCAACGCCTACGACGGCAAACTCGGTGTGAAGGTCGCGTGGTGATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52069-52890 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTR01000071.1 Hyphomicrobium sulfonivorans strain WDL6 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52069 29 100.0 32 ............................. ACCATCCACTCGATGCTGGAGCGCGGTCGGCA 52130 29 100.0 32 ............................. AAATGATCCGACTTGAGCAACCCTGAGACGCG 52191 29 100.0 32 ............................. CTGGCTACTACGGCAGTGATGCAGCCATAAAT 52252 29 100.0 32 ............................. CGGACATTGCAACACTGCTAAACGAGATCGAC 52313 29 100.0 32 ............................. CCTCGCGGCAAATCGAGGGCTTCGCAACAGCC 52374 29 100.0 32 ............................. CCTGATGGCATGCACTTTCAAGCGGCACGCAC 52435 29 100.0 32 ............................. GCCTCTCCATCAACCACGACGGGGACAAATAA 52496 29 100.0 32 ............................. CTGCTGCGGAGAACATTGCTGCAGTGAAGCAG 52557 29 100.0 32 ............................. CCGCTGAAGAAGACCGCGCCGCCAGTGCCGGT 52618 29 100.0 32 ............................. GTAACGACGATCTTGCTCGGTGTGCTGATGGC 52679 29 96.6 32 .............C............... CACGTGCTGACCGCTGACGTTCATGCCGGCAA 52740 29 100.0 32 ............................. CTCTCCGCAGACGACTGGAAGCTGGTGTTCCT 52801 29 96.6 32 .....G....................... GCCGTCCGCCGGGCAAGCGCAGCGCGAGTAGC 52862 29 82.8 0 .............TT.......C...G.T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTGTTCCCCGCACGCGCGGGGCTGAACCG # Left flank : CGGCCTCGGTTTCACGGTTTGGAAGGGCGCCATTCGTGGCGTTGGGTGATTAGCTCAGTTGGTAGAGCAGCTGACTCTTAATCAGCGGGTCGAAGGTTCGAGCCCTTCATCACCCACCATTCTTTTACTTGGTTTTCCTCACAAAACAGATCGGCACGGGGCAACGCCCCGGCAAAATTGAATAGGCCGGCGTGTCGGGATGACGCGCGGGCCTGAATTCGTATTGCTCGTCGCACGTTGGTCTTCCCCCTCCCGGAGCATCAATGCCGTGAATGCCGGATTCCATCCTGGAGGACAGCTGCGGTGTGTCAGAGCGAGCGCTTAGCGTAGCACCTGTTTTTGGGCAGTTTGAACTTCCGGATAGCCCTGTGGATGTCACCGAAATTGCCCTTGAAGAGGCGGCTCGGTTCATTGCTGATGGACATCGGACAAACCGTGAACGCCGGTGGGTTCTTTGACATGCGAATATCAGCTGCAATTTCAGACGCTTGTCTGGAAGA # Right flank : TGTAAGCGCCAGCACCTGACGCTGTCGCTTCTACCAGCGCTCGCGCACCGCCGCGCACCGCCGCGCTCAGTTCTTCATTAGCAGGTGCTTGTAGCTGTCCAGCCCGGCCAGCACCGCCGCCGATCCTTTGACCACGCAGTGCATCGGGTTGGGCTGCAGGTGAAACGGCACCCCCACCTGCCGCGTCAGCGCCACGTCCAGCTTGTCGAGCATCGCGCCGCCGCCGGTCAGGTGAATGCCGCGCTGGCGGATATCGCGCAGCGTTTCCGGCATCAGATCCTCCAGCGCGCGCTGAACGAAGTCGGCCAGCGCCTCTATCGGTTCGGCCAGCGCATCGGCGGTATCGCGCGCGCCCAGCACAACCGTTTTCGCCGTGCCCTGCTGCAAGTCGCGGCCGCGGATATGCGCTTCGGCGACACGACCGCTGCTTTTGGCGATGGCGGTGCCCAGTTGCACTTTCATGCGCTCGGCGTTGGCGTCGCTGATGTGAAGCTGATGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 56263-57633 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTR01000091.1 Hyphomicrobium sulfonivorans strain WDL6 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 56263 29 100.0 32 ............................. AAAATCAGCATGCTGGTGATGCCACTATTCAT 56324 29 100.0 32 ............................. CTGATCTGCTGCCCGTGCCGGATCTGCCGGAG 56385 29 100.0 32 ............................. ACACGCAATTTCCCATAGGTGCGTTGTTGAGA 56446 29 100.0 32 ............................. CAGCAGGTGGCTGGCACGAACCTGTCGGATTG 56507 29 100.0 32 ............................. AGCCGGTATCCACCACATGCCGCAGCCGTAAA 56568 29 100.0 33 ............................. CAGGTCGCTGCTTTTATGAAGGCCGCCGAAGCT 56630 29 100.0 32 ............................. CGCGAGGGAATGGATGAGGTTGAGGTGCCGTG 56691 29 100.0 32 ............................. CTGTTTGCGTGCAGAGCGGATATCGGATGGGG 56752 29 96.6 32 ............................T TGCCCCAGCCGCCCATGCAGGGCTTCGGATAC 56813 29 100.0 32 ............................. CCTGTACAGCCCAAGACGGGGCTTAGCCTAAC 56874 29 100.0 32 ............................. CGTGAGCGTGGGGCGGATCATATCTCCTAGTC 56935 29 100.0 32 ............................. CACTTGAGGTATTCAAGGCGCTTCGGATTGTT 56996 29 100.0 32 ............................. ACCTGGACGCGATCAGGTGCCGTTCAAAGAAC 57057 29 100.0 32 ............................. CCAACGAGATGCCGGCACCCGACACCCTTGTG 57118 29 96.6 32 .............G............... AAAGAGGCGGACAAGCTGGCTCAGGCCAAGGT 57179 29 96.6 32 .............G............... CAGACGTTTGCGGGTGCGTTCGGGACCGGCGG 57240 29 96.6 32 .............G............... GTTCAGTACAAGGACGCCCCGAGCCCCAGCCA 57301 29 96.6 32 .............G............... GCGTTGAGATACACGGCAAGCGGCGCGCTGGT 57362 29 100.0 32 ............................. TCGCGTTCCTGAATGTCGGTTTCGACTTCGTT 57423 29 96.6 32 .............G............... AGCGCCCAGGCGCACTACAGCACGATGTCGAT 57484 29 93.1 32 .............G.......T....... ATCCGGTTCATGCCGCTCTGGATCGTCGTTGC 57545 29 89.7 32 .......T....TG............... GCGTTCGGCGTTTCAGTGCCGGTGAGTGGTGG 57606 28 86.2 0 .......................-.T.TC | ========== ====== ====== ====== ============================= ================================= ================== 23 29 97.8 32 GTGTTCCCCGCACACGCGGGGCTGAACCG # Left flank : CGCCGCTCGTTCTCGACCATGGAATGGCTGGGCCGCTATTCGATGACTGACGTGATGGTGCTGGCGCTGATGATCTTTTACGTCAATTCGTCGGGCTACACGGAAGCGGTGGTGATGCCGGGCGTCTACTTCTTCGCCGCCTCCGCCATCATCACCATGCTGGCCTATGGCTGGGCCAACACCGTGCCGCCACGCAGCAGCGCAACGGATGCAGCGGCGGCCGATGCCTGGCATGATGCTTCCGTCGCGACATCATCTGGCGGCTCCCGACCTGCCAGTTCTGCTTCGCCGGAGGTTGCATCAGCGCACGTCTTACAACCCGCAACCACAGCACCCACCAACGCGGCTGGTCAGGTCGTCACGCTGCCTACCAACCCCGGCCGCCGCTACCGTCCGACCACCGAACCGGCGGAATAACAACGAAACTTGAACTGCGTTCAATTCGGTGCCGTTCTTTGACATGGGAATTTGTAATTCGTACCAATGCGTTACTGGGAAGA # Right flank : CCCGGTGCGAGCGGACGCACCGACCACAGGCTGCCCCTCTCGCGAATCTCAGCTACATTCGCAACCGGCGTCGCCTGCGCCTCCCCCCTCCAATCGGGAAAGCACACTGCATGCAGGGCATTTTGCGAAATCGCGAACCGACCTGTCGGGCCTTGCATAAGGAGGGATTGCTCGAACTGCCCGCTACAGGAGGTTTTCGACGTGTCCCTCTCCGCTCCGATCTACGTGCTCAAGCGCAAGGCCAAGCAGCTCAGTCGCGCCAGCAACATCCCGCTTCACGACGCGCTCGATAGAATAGCCGTCCAGGAAGGCTTCACGCGCTGGAGCCTGCTTGCAGCGCATGCAGCGTCGGTCACTACGGCGGCAAAGCTGTTTGCGCGTCTGACAGCCGGAGATCTGCTGCTCATCGGCGCCCGCCCCGGCCAGGGCAAGACGTTGCTGAGCCTGCAACTCGCCGTCGAAGCCATGCAAGCGGGCAGGCGTAGCGCTTATTTCACGCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGCTGAACCG # Alternate repeat : GTGTTCCCCGCACGCGCGGGGCTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //