Array 1 42352-45620 **** Predicted by CRISPRDetect 2.4 *** >NZ_CSTE01000006.1 Haloferax massiliensis strain Arc-Hr, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 42352 30 100.0 35 .............................. CGACATCGCCACCGGTCGCTCTTGGGGCGCGTCGT 42417 30 100.0 36 .............................. GCGGACGACGCCACCGGCACGCCCGCGGCGGACGAC 42483 30 100.0 36 .............................. CAGTCGGCGGCCATCGCGACTGGTGCGAATCCGAGC 42549 30 100.0 35 .............................. AGAGCTACAAGGAAGAACACGTCGGCAAAAGCGGC 42614 30 100.0 35 .............................. GACTGGACGCTGGAGTTCGTGCTCCGGGGCGCGGA 42679 30 100.0 38 .............................. GGTGTGGATGAACTCGGTGTCCGATTGGAACGCCTTGC 42747 30 100.0 37 .............................. GGGTTCTTGAGATACCGGTCGGCCTCGTCGATAGAAC 42814 30 100.0 37 .............................. ATTTTGAGGTCGCCCTCGACGAGTCGCTCAGTCGCGT 42881 30 100.0 36 .............................. CATCCACGCACCAACCATGGCCCGCACGTCGTCTTC 42947 30 100.0 36 .............................. CTCCAGTTCAATCGCGTTGTCCACGTTAAAACCATG 43013 30 100.0 36 .............................. ACCCACCGCTGCACATCCTGCGGGACGTCCTACAGC 43079 30 100.0 34 .............................. ACGGTCAACGAACCCCACCGCGGCTGTGATTGTG 43143 30 100.0 35 .............................. TGGTCGGTGCCGTGGACAGAGTCGAACGCGTCGAC 43208 30 100.0 37 .............................. TCCGAGTGCCCGTTCCGCGATGTGACGGCCGCGGGCG 43275 30 100.0 35 .............................. CTCGTCGGTCGGCACGATGCGGACCTCACACCCGC 43340 30 100.0 36 .............................. GGCTACAGGCGACCCGTGACTGCGCGTGGGAGAAAC 43406 30 100.0 38 .............................. ACGAGACGGTCGTCGACTGCATGACTGAGTTCGGAATG 43474 30 100.0 35 .............................. TCGGTCGCGAGCGGAGCGGTTACTCGAAGACTGTT 43539 30 100.0 34 .............................. AATGTCAACTAAATCCCAATACGGTACGATGGGG 43603 30 100.0 34 .............................. GTCTCGGAGGACGATGGGACGTGCGAGACGTGGC 43667 30 100.0 37 .............................. ACCCCACGTCGTATCAAGGTCACATGGTTCTGTAGGC 43734 30 100.0 35 .............................. TACCCCCCACGCAACCATGATAGCGCGGAACATTG 43799 30 100.0 37 .............................. GTCAGTCACCTCTTGCCCATTGGCGTAGTCGTCACGT 43866 30 100.0 34 .............................. AGGCAGTTGGTACAGACTCGGCTGGAGTTGAGGA 43930 30 100.0 33 .............................. GACGGGAGCGTGACGAAAGCGAACATCGTCACC 43993 30 100.0 36 .............................. AACCACATCTCGCGTTTATCAACGCCCCGAACAACC 44059 30 100.0 37 .............................. AAACTTTAAAACTATCATCTGGGCTGTTTCTCGGCTC 44126 30 100.0 39 .............................. TCTTGGGCGTCTGGAAGCCATCTGTTCGACATTTCGGCG 44195 30 100.0 34 .............................. TTACTCGGCGGAACTACCCTCAGGGGTCTAATCG 44259 30 100.0 37 .............................. CTCCCGGGGCTTGCTTGACTGCGTAGCTTCAGCGCTG 44326 30 100.0 37 .............................. GCGCTGTCGCCGCCGGCGACCCCTGACGACCACGACC 44393 30 100.0 37 .............................. CCCCCAGTCGGTTTCTCGCCAGAACTCGGAGAGAATG 44460 30 100.0 38 .............................. ACCAAAGTCTGCGATTTCTGCAAGTGACTTGATTTGCA 44528 30 100.0 35 .............................. CCATCGACGAGGGACGGGCCGAAGAACTCCAGCAC 44593 30 100.0 36 .............................. TGCGTTCACATGGTAGACATCGCCGTCGGGCTCGCC 44659 30 100.0 36 .............................. GCGGCATTAGGACGAACGATTATTGAAGCACTCCCG 44725 30 100.0 37 .............................. CCGTCGTCGAGTCGGACGTCGTCGCCCGGCTCGATGA 44792 30 100.0 35 .............................. CTCGTTGCATCCCTCGACTTCGAGGACGCCGACAT 44857 30 100.0 34 .............................. CTTGCCCAGGACACCGATAATTTCTACACCGTTT 44921 30 100.0 38 .............................. GACTACGACGCCGTCGACGACGTGTAAGCGCGACACGC 44989 30 100.0 38 .............................. TCACTACAAGATTTATTTCGTAACGTTGTGATTTTAGA 45057 30 100.0 35 .............................. AGTCCTCGCGAGTTCGTCGCGCTCGTTGTCGGAGC 45122 30 100.0 37 .............................. TCGACCGGCTCGCAGTCGACGACCTCCAAGCCATCAG 45189 30 100.0 38 .............................. CCCCTCCAGCTCGTCGAGACGGGCGTCGATTGCGTCGA 45257 30 100.0 36 .............................. TGCTCGCGGTCGGTCCGCTCCGACGTCGTCTGCCGG 45323 30 100.0 36 .............................. ATCGGTCCCGACGCGTCGACCGACGATGTCGCTGGC 45389 30 100.0 37 .............................. GAACTTTTCCCCGATATCATGCTCATTGTATGCAGGG 45456 30 100.0 39 .............................. CCGGAGTCCCGACTCGCGCGCATCGAACACGAGGCGGCG 45525 30 96.7 36 ...........G.................. TGTGACTCGTGTGGAGAGGTGCACTTTGCACCGCAC 45591 30 83.3 0 ...............G.A....G..A..A. | ========== ====== ====== ====== ============================== ======================================= ================== 50 30 99.6 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : TCCCGCTGGTCGGCGACTCGCTCACCGACTTCCGCGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGAGGAAATCGCCGCGCCGACGATGACGCTCGCCGCCGACACCAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAAGACCAGGAACTCGCACTCGTCCTGCGAGACGGCGAGGTCGTCGGCCTCCTCACCGCCACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTGGACTAGCGCCGTCGACTCCGCCTTCGGTTTTTTCAGCGTTCGGCCGAGGCTCACTGACGAGACGGACGCATGACGCATATCCGCGGAAGTGGCTCTCAACCGCCGGTGCTGAACCGTCGTTCCGTCGACCCCCCGGGGGGTTCGGGGGAATTGGGGGTCGACGGAAACGTTGATGTGAGTTCGCCATGTACAGCCGCCTACCCCCGTGAATTCGGACGG # Right flank : CGAGTGAAACGTCGGGAGACGACGTTACGACTCTCGTATCAGTCGACCGCGTACCAGAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTTCGACGACCGCGGGGCGAGTCACCACGCCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGATGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTTTCGGACGAGTCCGTCGACGAATTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 236139-239522 **** Predicted by CRISPRDetect 2.4 *** >NZ_CSTE01000005.1 Haloferax massiliensis strain Arc-Hr, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 236139 30 100.0 35 .............................. TCGGTGAGATCTCGACGGGAGTACCTCAAAGATTG 236204 30 100.0 36 .............................. AGACATGCTTCTTGGACCGAAGCGCGTCGGGCGCTC 236270 30 100.0 34 .............................. GACTCAACCAATCTCGACGAGGCGGTCTACGACT 236334 30 100.0 44 .............................. ATCCGCAACCACCTGACGGCGAACTCGATGGACCACGAGCAGGT 236408 30 100.0 35 .............................. AGCCGCCGCGAAGCCGCCGTGCAGTCCCTGTTGCT 236473 30 100.0 35 .............................. GTTCGGTCGATGTTGGAGTCCGTGCTTTTCGGCGA 236538 30 100.0 35 .............................. AGTGAGTGAACGCGCTCAGTGCGAGGCACGAACAT 236603 30 100.0 35 .............................. TCGATGTCGATTGTCTGCTCGACTTCCTTCGGGTC 236668 30 100.0 36 .............................. CGCGTCTGGTACGAGTGCCCTGAGTGCGGCCACCGA 236734 30 100.0 36 .............................. AGTGAGTGAACGCGCTCAGTGCGAGGCACGAACATC 236800 30 100.0 35 .............................. ACCGACCAGTCGCTTGGGCGCTACGCATCTCGGGG 236865 30 100.0 36 .............................. GTCGGGCAGTTCGGCCGTGATAATCTCGTCAACCGA 236931 30 100.0 36 .............................. GATAAAGTCGGTCGTGATGGTTAATTCCACCCAACC 236997 30 100.0 35 .............................. TTGGGCTTCCATTGTTGGAAGGACAACGGTTGCCC 237062 30 100.0 36 .............................. ATCTCAACAAACGCGGCGTTTCTCGGGGACTGCCCG 237128 30 100.0 31 .............................. CGCTTGAACTCGGTGTCAACTCTCGCCCCCA 237189 30 100.0 35 .............................. CCGCGACTGCCTCGAACTCGATTTGCGTGCGGACC 237254 30 100.0 36 .............................. AACCACATCTCGCGTTTATCAACGCCCCGAACAACC 237320 30 100.0 34 .............................. GGTTGCAGGTCACGGAGTTGGTACGTCCACGAGT 237384 30 100.0 34 .............................. ACCTACCACGGCGCCGACTTCGCCGTCGACGGGA 237448 30 100.0 35 .............................. CTCCGCCACGACCCCGAGGCCATCGCCGATGCCGA 237513 30 100.0 35 .............................. TACGTCGTCGGTGAACGCGACGACTCTCACGTCAT 237578 30 100.0 40 .............................. CCCCGTGGTGTCGGCATCGGTTTGAGTCGTCCATTGCCCA 237648 30 100.0 35 .............................. CCGCCTCGGATTGTGATATCGTGGAAGTGTGGGTC 237713 30 100.0 37 .............................. CACAACATGGCGATGAATATACACTCCCCGATAAATG 237780 30 100.0 40 .............................. GCACGGTCGCAGTACATGCCCGACCTCGTCCGAGACAACA 237850 30 100.0 36 .............................. ACTCCGGTGTAGGCGAGGGTACAAGTAGCAAACTGC 237916 30 100.0 36 .............................. GGCCGTGGCGACGTGTCCGAGGCCTTTCAGGAGTGG 237982 30 100.0 35 .............................. GCACGTGATGCACGCGACCGGCAGCGGGTAGTTCG 238047 30 100.0 36 .............................. TCGCGGTCCTCGTTGGTGTCCGGGAGGACCTTGATG 238113 30 100.0 36 .............................. AGAGAGCGCGGCATCGACGAGCGCGCCACCTGCCGC 238179 30 100.0 38 .............................. CTTGTTAGATTCGTTCCCTTCGTCACTCAATATCTCTT 238247 30 100.0 37 .............................. TTTGTGTTGTCTCTGTCTTGCACCATAAGAACCCGCC 238314 30 100.0 36 .............................. CTCATAGAGATATTTTGCGAGTCTGTGGTCCGGCAG 238380 30 100.0 37 .............................. TCGATCAAGCACCTCGGGACCGACGGCATCCTCGCGC 238447 30 100.0 35 .............................. GCCTCGTGTGGCCTACTGCGCGACCTTGCGGAGTA 238512 30 100.0 37 .............................. GACTGGCCGAAGGATGTCATGGCTATCCGTTTTGCCC 238579 30 100.0 37 .............................. GACTCCCCTGTGGTGCATTGGGAGATGGCACCTCCCA 238646 30 100.0 37 .............................. ATGCAAAATTCGAGGACGGTCGCGACCTCGAAGGCCA 238713 30 100.0 37 .............................. GACGAACGCCACGTTCACACTGACAATATTGCTTGAA 238780 30 100.0 35 .............................. CCACCGGCCACCTTGGGAGACCGACCGGCCGGCAA 238845 30 100.0 37 .............................. CTGCTTTTCCTTCCGGTCGTCGATGAGGTTCATGATG 238912 30 100.0 33 .............................. GGCCCTGTCCGTGCGCTCGGGAGAGGTACGATA 238975 30 100.0 36 .............................. GTGTTGTTTAGAACTCGCGGGTAGACTGTCTCAGGA 239041 30 100.0 38 .............................. GAATTGACGCCAACCGCTTCGCCCGGTTCGTCTCTGGT 239109 30 100.0 34 .............................. CTTCAACGACTCGCATCTGACGGTGATGAAAGTA 239173 30 100.0 35 .............................. TTGCCCCCAATTGGTAAACGTCACTTCGCCGTCGA 239238 30 100.0 34 .............................. CCGGTGGAAATAGACGCCATCTGTGGGTCGTCGT 239302 30 100.0 33 .............................. AACGACTGCCGCTACGTCCTCTGGAATTTCGTG 239365 30 100.0 34 .............................. GTTTTTAGACGCGGAGAACCGGCAGTAGACGCCA 239429 30 100.0 35 .............................. CGGTTCGAGGAGGCAGGGGAATGACCGACTCTCAA 239494 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== ============================================ ================== 52 30 99.9 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : GTCGGCACCTCCGTCGATCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCCACCATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGGGTCGACGACCTGCTCGACTCCGCATGCGAGCGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAGCTCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAACTCTGGGTCCGCAAGTACATCGACCGCGAAGGCGAACGCGGAACCGCGAGTGTGGCGGAAGCCGAAGACGCACCGCAACCGGCCGACTGAGCCCGGGGGCTCTCGGTGGGGTTTTCTCGAATCGTACCGCTGGTCGCGAGGAGAGGAGCTTCGTTTCCGTCGACCCCCCGGGGGGTTCGGGGGAATTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTAAGCGGCATTACGCCCGTGGTTTCGGGACG # Right flank : CGGAGAAAGCCATCCAATAAGGCGATCACCGAACATTTCAGACGAACTTCAGTTAGCACCGACCCGTCAAATGACGGGAATAACTTTATGTCGATTAGCCAACAATCGTGGAGACAGCAATGAGTACAGAAGGAGGTGTCGGATAACGGTGCGGGTCATGGCTCACTTATCGGCGCGCGCCGACGCCGCGTATCAGAACGATTACCATCACAAGATTCGCGGGCGGATATGGAACGCGCTCGATGGGACGCCCTACGGAGAGCGACACGACTCCGGTGAGCCACCGGGGTTCGCTTACTCGAATCCGTTTCCGCCCCGCGATATGCGGGAAGGTGACGACCGGAAGTTGCTGGTCGCGTCTCCCGACGAGGAACTGCTTGCGAACGTGGCGGCGAATCTGCTCGACGACCGAGAGTTCAACGTCGGTGAGATGCCGTTTCACGTCGACGAAGTGACGTCTCTCGAACCGGACGTGGGCGAACCCGGGACCAGAGGGACGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 249062-251379 **** Predicted by CRISPRDetect 2.4 *** >NZ_CSTE01000005.1 Haloferax massiliensis strain Arc-Hr, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 249062 30 100.0 36 .............................. CGATTCACTCGGTCGCGCACGTCGAGTGGTTCGACT 249128 30 100.0 36 .............................. GATATGAATCATATCGACTCTCCAACAGACCAACTC 249194 30 100.0 35 .............................. CCCTCATCAGCCCAGTACACAGCCCGAAACATCTG 249259 30 100.0 35 .............................. ATCGACTGCGCGAACTGTGGCGACCGCGTCATCGT 249324 30 100.0 34 .............................. GAAGACCTCTGCGACCCACAGAACGCAGATGGCT 249388 30 100.0 36 .............................. TCGATGAGGACGCCGGCCTGCAGGTCGCGAATCTGG 249454 30 100.0 37 .............................. AGACTATAATCAGGGCGAAATACCTGAAAGTCCGCCG 249521 30 100.0 36 .............................. ATAATTTTGCTTGACCTTGACCCGCCGGTTCTTCGA 249587 30 100.0 35 .............................. TCTATCCGAGATTCTCTATACGAATCCATAGAGAA 249652 30 100.0 36 .............................. AGAGGTTGTAGCGGGTGATTAGGATTTTGACCGGCG 249718 30 100.0 36 .............................. ACTCGGCACCATAGCGCGCCCTAGCGGGCGCGCAAA 249784 30 100.0 38 .............................. CAGATATGACTACCGCGTGACTGCGTTCACGGAGCATA 249852 30 100.0 35 .............................. ATCCCACTCAATGATTTCCTTTTGGTTGTTGCCTA 249917 30 100.0 36 .............................. TGCATGCGGACGAGGAAGTCCTCGGTGACGTCGACG 249983 30 100.0 34 .............................. GCGGACTTCGCGAGCCTCGGCGCGACGGCGGAGC 250047 30 100.0 36 .............................. GCGATGCGCGGCAAGAAATCGAATCCGCACTCTCCG 250113 30 100.0 34 .............................. GTCCGCGCGAGCGAACTGTCAAAATCCGAAGGTT 250177 30 100.0 35 .............................. GCCCCAGCCGCGTCGTAGACGGTCTCCGACCCCGG 250242 30 100.0 34 .............................. GTGAACTCCCACTCGCGCCACTGTCCCGCATCGT 250306 30 100.0 35 .............................. GTCTGGCGGTGCGATGCCGGGAATGGGACACACCG 250371 30 100.0 36 .............................. AGATTGGGTCGAAGCGTACCACGAACTAAACTAACC 250437 30 100.0 36 .............................. GTGTTGAATGCACGCATGGGATTCACGTGTTCCCGA 250503 30 100.0 37 .............................. CGTCAGTGCTGATACGCATACCTCAGTTTTGCACATC 250570 30 100.0 37 .............................. TCGTCGGACGCAATCTTCACCGAGGAAGACCAGATGA 250637 30 100.0 35 .............................. ATGGTAAATCCAGTGGTGCTCCTGCTTTTCACCTT 250702 30 100.0 35 .............................. TCGTCGGATGTTCACTTCGATTGGGCCACCGCCCT 250767 30 100.0 32 .............................. GTCGAGTCGGTCGCGGACGCTCTTGGCCGCGC 250829 30 100.0 37 .............................. GTCGAGAATCTGAAGACGTGCCTCCAATTGAGAGTCG 250896 30 100.0 37 .............................. GAGCTATCGCGTCCTCGTGGAAGGTAACGCCTCGGCT 250963 30 100.0 36 .............................. TTCTTCCAGCACCCGCTGGATGTACTCAGTTTTCGA 251029 30 100.0 37 .............................. TGCTCGCGGTCGGTCCGCTCCGACGTCGTCTGCCGGG 251096 30 100.0 33 .............................. AACTCGGCGAGAAAGACCCCGACTCGGATGCGT 251159 30 100.0 34 .............................. ACGTCTTGCATTGTATCACGGCGGTAGGTCGCCA 251223 30 100.0 35 .............................. ATGTGTCTGGTTTCCTCACAAAGCAGACAAAACGG 251288 30 100.0 32 .............................. GCGCGGAACTCGTCTTCCGAAGCGCGAACCGA 251350 30 96.7 0 ...................G.......... | ========== ====== ====== ====== ============================== ====================================== ================== 36 30 99.9 35 GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Left flank : ACGCTTGAGCGGACCGTCGACCATCCGAAGCTCAACCGCAAGGTGAGCTACCAGTACCTGCTTCGTCTCGAAGCGTACAAACTGAAAAAGCATCTGCTGACCGGAGAGGAGTACGAACCCTTCGAACGGTGGTGGTGAGATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAACTGGGGCGGCGCTATCTGACGCACGTCCAAAACTCCGTCCTCGAAGGAGAGATCTCCGAAGGTGACCTAGCGACACTTCGGAACGAGGTCGAAGACCTGTTGAAGCCGGGAGAATCCACGATTATCTACGAACTGTCCTCGGACGCGCTGCTCAACCGCTCGGTGTACGGCGACGATCCGACCGAGGAAAAGCGCTTCCTCTGAGTTCCGTCGACCCCCCGGTCAATTCGGGTTACTGACGGTCGACGGAACTTCTTTATCGTAGTCGTCCTTCAGAAGGTCTGTGTCCGTGATATCGGGCATG # Right flank : CCAGAACGTCGTTAGCCAGTCCGTCGAATGCCCCAGGTTTCAGACGTACCCGTTGATGGAAACCACTAGAGAGAGCTAGGCAGTCCGTCGTCAGCCGAAACCGACGCGAAAAAGAGACCCTGACGCTACGCCGCCTCGGCGTACATCGCCACCAACTCCTCGGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGCCCGATTCGTCCGACCCATGCGGACGGCCTCCTCGGGATTGGAGACGAGTCGCGCGAGCGCCCGCGACAACTCCTCGGCGTCGCCGGGCGCGACGAGAATCCCGTGGTCGTCGGTGATAACCTCGGGGATGCTGCCGACGGGAGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATTGGGAGCCCCTCTGCGTACGTCGGAAGGACGAACACGGTCCCGCGGCCGATGAGGTCGCGCTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTTGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //