Array 1 1480360-1478275 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235930.1 Fortiea contorta PCC 7126 Mic7126DRAFT_MPQ.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================= ================== 1480359 37 100.0 33 ..................................... CAATATTTCTGGACTTTTAGATAAAAGAGAAAT 1480289 37 100.0 37 ..................................... GAATATCCCAAGCTTCCCAAATACCTCTGGCTAATAT 1480215 37 100.0 36 ..................................... AATGCCTTATCAAGACAAGCTGCAATATTGCAAGAA 1480142 37 100.0 35 ..................................... TTTCAGTATAGTAACTAACAGTGCAATTACAGTTC 1480070 37 100.0 40 ..................................... ACTAATGGCTGATTTTAATACTAGCCACTTATTACTTAAA 1479993 37 100.0 36 ..................................... CTTCCAGGTATCTGTGCATTACTTCCAGAAACTCGT 1479920 37 100.0 34 ..................................... TAAACACTAGTTACTATAAAAGAGTAAAGGAAAC 1479849 37 100.0 41 ..................................... GAGACTTGGAGCGGGGCGGAAAGCCTACTAGAGCAAGTGAC 1479771 37 100.0 38 ..................................... TTCTGCGACCCTTTTTATTATGGCTTCTAAAGCTGCAC 1479696 37 100.0 37 ..................................... CCTATACCAGTTAATAGAGATAAGAAACTGATAATAG 1479622 37 100.0 35 ..................................... TCTAATTTAGTTTTAGCGTCCATAGAAAGGTTCAA 1479550 37 100.0 36 ..................................... TATGACTTAGGTAGATAGCAATATAGCAGCAATAAA 1479477 37 100.0 34 ..................................... AGCAGAGATGGTAATTCGGGGCTATGACTCTAAC 1479406 37 100.0 32 ..................................... AACAAAAAACCCGGCTACCAACCGGGCATCGA 1479337 37 100.0 33 ..................................... TGAAGCCTAAACTACCAAAAGTGACTTTGTCAT 1479267 37 100.0 38 ..................................... GTGTTGTTCGTGTGCAGCGTGCTGGTCAACTGCGGGAC 1479192 37 100.0 34 ..................................... TGAATGCTACCTCGACACAAGCCGGAACAACAGA 1479121 37 100.0 36 ..................................... CGAACATGTACAGCTATCAATCGCCCTAGTAGCGTA 1479048 37 100.0 34 ..................................... ATCTCAAACCTCCAGGAGACCCCCACCAAATCTG 1478977 37 100.0 33 ..................................... ATCAACACAAACGCCGTAGAATTCGACCTTTCA 1478907 37 100.0 33 ..................................... CACATTTGGGAGCGATCGCCTAGCCAATCCATT 1478837 37 100.0 33 ..................................... ATTCGAGAAAGCACCAAATCACCATTAGAAATA 1478767 37 100.0 33 ..................................... ATTAACGGTGCAGTTACACCTCGATGGATTGAA 1478697 37 100.0 34 ..................................... AAACGTAAAACAGACGAAATTCAAAACCGCACAG 1478626 37 100.0 33 ..................................... ACTAAACCAACTCGAAAACGATATAATTCAATT 1478556 37 100.0 37 ..................................... AAAAGCGATCGCTTCGAGGATGTCGATTACCCCTGTG 1478482 37 100.0 55 ..................................... TTGACATATTTATTAATACCAAGATACGAAGTACTAGAAGCGATAGCGATCGCTG 1478390 37 100.0 42 ..................................... AATTATTGGGTTAATCAAGTATGTGAAAAGTTTTTCTATTGC 1478311 37 86.5 0 .............C..................ATTC. | ========== ====== ====== ====== ===================================== ======================================================= ================== 29 37 99.5 36 GTTTTAATTAACTTAAATCCCTATCAGGGATTGAAAC # Left flank : CAGAAGACAAGCGTCGCACCAAAATTCACAAGATTCTCAAATCTTATGGACAGTGGATGCAATATTCTGTATTTGAGTGCGAACTGACACCAACTCAATATGCTAAACTGCGATCGCGCTTGGCAAAAGTCATCAAACCAGACCAAGACAGCATTCGTTTTTACTATCTCTGCGCTTGCTGTCAACCCAAAATTGAGCGCATCGGCGGCGAAATGCCAATTGATACCACCGTCTTCTTTGCATGATTTTGGTGTCAACCAGTAGGTGTTTGAAAGCTACGAGTAAATTTCGTGCCTCAAAAGCTTATCCCCGCTGACTTTGAGCCTAATTTCACCACCCAACAGGTTGACGCCAAATCTGAAACCCCCATCACCACAGTCTTTGAGCTATTTGCCATTCACCCCACCTTGACAACCCAACCCCTCAAAAGCTATCTTGTCTCCAGATTGACACTTCTGAACCTTGAAAACCAAATATATCAAGCCTTCTGGATGCCGGCA # Right flank : TTGGTACTTACCTGCAGGAAGCAGCTTGGCGTCTGTGCCTAAATCCCTATAAAAGGTTGAAACTTGGAGGCGTAGCAATGCTATGCTCCTACTACTGATGCTTAATCTCAGGTAAGCTAAATGAATTATGAAACAGCTCGCAAAATCCTCATAGACCAGACAACCACCGAAAACAACTCAGATGCTCTGCTAGTGCGTATGCAGCAGGGAAAACCGCCTGTACCTGGTCAGATTACCTCGATTTTGCTAGCCTTGAAAGTGGTGTTTGAAGCCCTCAAAGAAGCCCCAAATATAGATAGAGAGCTAGCTTTTGCACTATATCAATTAGGTATCAAAGCGCAACAACTGTTTGTTATCGGACGGAAAGCAGGCGTTGAATGGCCCCCACTACTCAAGGAGGATTTGCTGAGAATTTCTCTAGCGAGTGAAAGTATATTTGCTGGTAAATGGCAAACCTTACCTGTTAGCGGACTCAATACGCCTTAAGTAGCAAAAAGTTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTAACTTAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 3051652-3054238 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235930.1 Fortiea contorta PCC 7126 Mic7126DRAFT_MPQ.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 3051652 37 100.0 35 ..................................... ATCAAAGAATTGTAGAGTAATGTCTTGGCTGATAT 3051724 37 100.0 38 ..................................... CCAGCAGTGGGCGACACCCACATCACCAGTGATTTTGT 3051799 37 100.0 34 ..................................... AGTAGGCGATCGCCCTGAAGATGAGCAAGCAGCA 3051870 37 100.0 40 ..................................... GAAATTTGTTGCGCGACTCAGCTTTGAAGTGGGTATACTG 3051947 37 100.0 41 ..................................... TGATCTTTCTCTTTGTAATCGTGATTGCCCCTCAAATCCTT 3052025 37 100.0 34 ..................................... TCTAAAGAGCGCAGAAATAATAAAGAATTTTTTT 3052096 37 100.0 37 ..................................... ACCAATAGAAACACATTATTATCAAGTTGCTGATTCA 3052170 37 100.0 34 ..................................... AAAAAATTTCCGAGTAACTTACCCAGAGTTTATA 3052241 37 100.0 34 ..................................... TCATCTGTAACTGTTTGTGCTGCACGATTATAAA 3052312 37 100.0 33 ..................................... ATTCAACTCTGCATTAGCCAAATAGAAACTTTT 3052382 37 100.0 33 ..................................... GGAATACCCAATTGCAGATATCAACTAATAACC 3052452 37 100.0 37 ..................................... AGCTTTCTGCCTTGATTGCCGACAGCACCCCAATCAA 3052526 37 100.0 40 ..................................... TCTCTAGCAGTATCAGAGCATTCCAAATTATCCCCATCGG 3052603 37 100.0 35 ..................................... CTCGCTTGGGGTAGGGGTAGGGATAAATCTCAATG 3052675 37 100.0 34 ..................................... TCGGATTACACAAAGTATTGTTGATAGTATTGGT 3052746 37 100.0 33 ..................................... TGGGTAATATTCGGACTCGACAGTATATGGTAT 3052816 37 100.0 40 ..................................... TTCCACTTTTGGCTTTGACTCTACAAGAGAATCATCAGGG 3052893 37 100.0 44 ..................................... AACTGACGAAAAACCATAAGTTAGCTGAAAATTTTCAAACCCGT 3052974 37 100.0 35 ..................................... TACATGGCATTTGTCGCGTAAACATGGCATAATAT 3053046 37 100.0 36 ..................................... CTGGGGGATGGCATCGGGCGATCGCACCTTATATAT 3053119 37 100.0 33 ..................................... AAAATACTAGGCTTTGGTGGCGACAGGAAGCAG 3053189 37 100.0 33 ..................................... TGTACCAAGTACAGCCAAAGATGTGAACTTTGG 3053259 37 100.0 37 ..................................... AAACAAGCCTTAATTCTGATGGTTCGTATCTGTGCTG 3053333 37 100.0 34 ..................................... GAGCAGGGAGGTCTGTGCCTTTTTTGGTAGTTGC 3053404 37 100.0 37 ..................................... AAACAATGTGGAACTTTTTTATGTAAAATCCTAGAAA 3053478 37 100.0 36 ..................................... TTCTCAATTCGATTTAGTAGTTCGTTCCTGCTTATA 3053551 37 100.0 33 ..................................... ACAAGTTATCGAGCCGCAAATATCGATAACGAA 3053621 37 100.0 34 ..................................... CATCTAATCCTACATTGTAAGTATCGGTGATGTT 3053692 37 100.0 35 ..................................... GCATGGCTGCTTGGCTTCAATGGCTGGGATACCAG 3053764 37 100.0 36 ..................................... TGGAAACCCAGTAGCTTTAGCCCTGGGAGGAAAAAC 3053837 37 100.0 36 ..................................... TATACCTTGAATGGTGCTATTACAATCATCCACAAA 3053910 37 100.0 35 ..................................... TACTGGAGTACGCTATCTAGTATCGTTGGCTATTG 3053982 37 100.0 39 ..................................... CCGAAATTTTCCAACCATTCCAAAACTTTTTTCTTTAAA 3054058 37 100.0 36 ..................................... CCATCACAAAATCATTACTGTCGTAAGTGATAGCAG 3054131 37 100.0 34 ..................................... AGCAGCACCAGGAAAGGAAGAAAAATGCCGCCAA 3054202 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 36 37 100.0 36 GTTCCAATTAACATGAATCCCTATTAGGGATTGAAAC # Left flank : GTGTCATTGACGAATCAGGGATTCAGATCAAGCAGCGTTTAGTGGTCTTGATGACTTGTAACACCACAGAAAGACTAGATCCAGCAATGTTACGTAAAGGAAGAGTCGATTTGATGTATGAATTTACCCAGAGGTACGTTTGATATTCAAAATTCAACAAAACTTGAATGATTTCCCGTGATCATACCTGCTCTCCTCCAGTCGCTAATTTTTCCCATCCTCTATTCACAGACCGTTCTAGACTCGAATGGCGTCAACCAGTAGGTGTGGAAACAATGGAGAAAAATTTAGCACCCCAAAAGCTTACCCACGACAGTTTTGAACCCTTTTACGCCAGTTTCGAGGTTGACGCCATTTTCCAAAGCCCAACTACACAAGGTTTTGGGGCTATTTTCTCTCCATCCCTCTTGACAACCCAACACCTGAAAAGCTACCTTGATTGCAGATTGACGCAACAGCACCTTGAAAACCAAATATATCAATGCTTCCAACTCCGGGCT # Right flank : CAACCAGCTGCGTGATAACAAATCCGGTTTTCAAAACGCCCAAAAAGTGTATTGTGAAATTAAAAGGAAAAAGCTGAGTGAAATGAATGGTTGAACAACCATGCCAAAAAAAGTACATCTAGAAAAGCATTTGAGTGCAGAAGAACTGAAGCGGCGCTATATTCATGCATCAGAAGTAAAATCTAGAAGATGGCATCTGCTGTGGATGGTATGTAGTGGGTGGACTTTGAAGAAGGCAGCCGAGGCGATCGCTATCAACTATGACTATGCCAAAGAAATAATTCATAAATACAATAACCAAGGAATAGAGGCACTTCAAAATCGCCGGAAAATGGTACGTCGTCGTCACAAAAATGCATTATTAAATGCAGAAGCATTAGAAAAGTTACGACAAGCGTTCAAGAAGCGACCAGAAGATGGTGGAATTTGGACAGAGCCAAAGGTTGCGCGCTGGATTGAGCAAGAAACTGGACGTGAGAAAGTATGGGCACAACGGGGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAACATGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 5156186-5157892 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235930.1 Fortiea contorta PCC 7126 Mic7126DRAFT_MPQ.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 5156186 36 100.0 47 .................................... TTTGAGTATATGGAACCCCGGATACCTAACTCGGTGCGGATTTCCTC 5156269 36 100.0 35 .................................... GCTAGGATTGTGGGGAAGCCAGAGCCGACAGCCAC 5156340 36 100.0 40 .................................... TACACCAATCTTTGCTGATAGTATGCTAACGCTTTGTCTA 5156416 36 100.0 43 .................................... TATCAGCTTGTACAGGTCTGACTGATAACTTAGGGCTGATGCT 5156495 36 100.0 36 .................................... TGTAGTAGTAAATACTTGGGTCGGCTGGAAAGTTGC 5156567 36 100.0 40 .................................... TTTTACCAGTCACACCACCGGGGGCGGCAATAGTTACTGT 5156643 36 100.0 44 .................................... ATATAATATTTTGCCATTACCCATAGGTAGAATAACAGTTTTAG 5156723 36 100.0 35 .................................... TTTACCCATACGCCGTAGCTGGTGTCTGAACAGTT 5156794 36 100.0 43 .................................... TACGCCCAAGCCTGTCAACACGGGTAACTATAACCTCACTAAC 5156873 36 100.0 42 .................................... ACCCCTTTTGTATTATTTGTTTCAACCCAAATAACTTTGTTA 5156951 36 100.0 40 .................................... ACATCGGTTAACTTTAGTTGACTTAGCCTAGTCTCGTCGC 5157027 36 100.0 44 .................................... GTTCTTCAAGTCGCCGATGCTCGACTACGGCTATGACGTGTCGG 5157107 36 100.0 40 .................................... CTACCCTTACAAGTTCGAGGTAGTGTACGAGGCTATCCGC 5157183 36 100.0 41 .................................... ATTAGTTTTCCATTGCATGATGTTAACGGAGGTGAGTTCAC 5157260 36 100.0 37 .................................... CTTATTAGCACTGTGAACAATAGTACAGGCATTGTAT 5157333 36 100.0 43 .................................... AGAAACACATCGGCAAGCTCAAGCCGAACTTGAAGTATACATA 5157412 36 100.0 34 .................................... TTGTTGCTCACTTTAGTTGTTGTTGCTCACTTTA 5157482 36 100.0 32 .................................... GCAACGGAAGCACAGCCCCCGTGAGAAGACCT 5157550 36 100.0 43 .................................... TCAATAATTCTCAGGCTGACTCTTTATCACCTAAAGAAGTGAG 5157629 36 100.0 40 .................................... TTGGTAAAGGGCGCTACAGTGTTGCTCACATATATATCTG 5157705 36 100.0 34 .................................... TACCCGTTGCCCTGCTTAACTAACTTAATAACTC 5157775 36 100.0 47 .................................... ATAATATCGTATTCCCTACTTATTACCCCGAGCTATCCGGCAAACGG 5157858 35 91.7 0 ..............C...............-....A | ========== ====== ====== ====== ==================================== =============================================== ================== 23 36 99.6 40 GTCGCTTTTCTTTGGAGAAGCGGAATTAATGGAAAC # Left flank : TGCTAGTCCTAGAGGTGCAATTAATAAAATGATTAAAGTAACTGTGCCGTTGAGTAAGGCTACGGAAAGATTGCGAACTAAAGCGGCGCGGGAAGAGATATACATATATATATAGGTTTGGTTTGGAGAAATTATTTGTGTAAGAGGGGAACGGGGAAGAAGATTCGGTAACGTGTGCGGACTTTTTTCAAAAATCAAATAGGAGTTTTATATCTATATTTCTATTTACACAAGTAATTTTACAAAACCGGACTGTGATACGTGGTGATGATTTACGCCAGGGTGGGGAAATTGGGTATTGGGTATTGGGTATTAATTTTTGCGGCGGTGTCGGTGAAAGTTGCAAAGGCTGATTTTGTCGTTTACCCGGCCGATGTCTTTCTGTGTCAGGGTTTGAGGGTTGTTAGATGTCTGTTTTTGTAGCGAGTTGGGTTTGATTGTTTCACCCCGTCGCAAATGGCAGCTGGACATCAGGCGAGATAAGGGGTTTAATATGAGGG # Right flank : ACGCGGATAGGGGTACAACATGTTGCATTAGTGTCAACTTAACGCGAAACCCTTGTCCCGCCTCAGAATGAATTCTGAGTCTCATAGCTTAAGTCATCTCAAGATGACTAAAAATGCTCACAAATCCCTAGTCTACTTCAGTAGACTTCAGCTATTAGCCTGGGAATTCATTCCCAGGCGGGTATGAAAGCCAAGCATTTAAGCAATCTGTGGCTTAAGTTGACACCAATAAACATGTTGTGTCCCTACACGGATAATTTATTTCAATACTCATAATCTATAAAAACCATAAAAATGATGCGCTACCAAGATAGACACATTTTTATGGTTTTTTTACTTGCTGAATCTACTGAAATCAATAAGCAAACCCCAGTTTGAGAAAGCAAAATGCTCTTTTACTTGCTGAATCTACTGAAATTAATAAACAAACCCCAGTTTGAGAAAGCAAAATGCCTTTTTACTTGCTGAATGTACTGAAATCAATCACCAAACCCCAGTTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTTTCTTTGGAGAAGCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //