Array 1 425345-424417 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUO01000001.1 Pseudomonas aeruginosa strain WH-SGI-V-07291 WH_SGI_V_07291_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 425344 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 425284 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 425224 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 425164 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 425104 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 425044 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 424984 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 424924 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 424864 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 424804 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 424744 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 424684 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 424624 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 424564 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 424504 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 424444 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 22223-23871 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUO01000042.1 Pseudomonas aeruginosa strain WH-SGI-V-07291 WH_SGI_V_07291_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22223 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 22283 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 22343 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 22403 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 22463 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 22523 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 22583 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 22643 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 22703 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 22763 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 22823 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 22883 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 22943 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 23003 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 23063 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 23123 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 23183 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 23243 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 23304 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 23364 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 23424 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 23484 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 23544 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 23604 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 23664 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 23724 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 23784 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 23844 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 33742-32397 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLUO01000042.1 Pseudomonas aeruginosa strain WH-SGI-V-07291 WH_SGI_V_07291_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33741 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 33681 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 33621 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 33561 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 33501 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 33441 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 33381 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 33321 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 33261 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 33200 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 33140 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 33080 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 33020 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 32960 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 32900 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 32844 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 32784 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 32724 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 32664 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 32604 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 32544 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 32484 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 32424 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //