Array 1 192598-190860 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUTT010000002.1 Klebsiella pneumoniae strain SCPM-O-B-8914 (4PKP/19c) 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 192597 29 100.0 32 ............................. CGATCGTCAATCTCTGGCAAGCGCTGAAAATT 192536 29 100.0 32 ............................. CCAAATGGGAGCATTTATCTTTTCGCCGGTCA 192475 29 100.0 32 ............................. AGACTAATTATATACACACTTAATCCTGAGTC 192414 29 100.0 32 ............................. CGCCGGTCAGTGGTCAGGCAGGAAAAAAGCAG 192353 29 100.0 32 ............................. GAAATTAATCGCCCGTCTTCGCAGTCCTGCAA 192292 29 100.0 32 ............................. GCCAGTAGTTTTATTTCGAAATGCATTTCATT 192231 29 100.0 32 ............................. TAACCCACCGCAATTACGCGAATTAAACCCCA 192170 29 100.0 32 ............................. TAACGTCGCGGTGCGTCATCTCATCGGCAGTG 192109 29 100.0 32 ............................. TTGAGTTCGGGTCACGCCGCCGGGGTTGAGAG 192048 29 100.0 32 ............................. GCCTTTTCCGTTTTGCCGAAGAGTGTTGCGAA 191987 29 100.0 32 ............................. GATTATGCAAAACGACTTAGAGCCATAAGAAA 191926 29 100.0 32 ............................. TTTTCGGAATTACTGCGAGCGAGAGAGTGTCG 191865 29 100.0 32 ............................. GCTGCGTTGCCGTATTTACTCGCAGCGGCGGC 191804 29 100.0 32 ............................. TAACAGACGTATCATTTATGTTTGCTTACTCT 191743 29 100.0 32 ............................. GAAGTTAGCGATTATTTTTTACTGGAGAAACA 191682 29 100.0 32 ............................. TGACAACCAGATCCGAAAATCCTGGAGCCGGG 191621 29 100.0 32 ............................. ATTACATCGTTTTCCGGGTTTCGTTTGAGCAA 191560 29 100.0 32 ............................. GAGGGGCCATGGAGCCGGTGTTGATTGCGTCC 191499 29 100.0 32 ............................. CGATTGTCGGTGGTTGTCTGCTGGTATCTGCT 191438 29 100.0 33 ............................. CGCCGGTCAGTGGTCAGGCAGGAAAAAAGCAGC 191376 29 100.0 32 ............................. GCGTTGTCGTCTAACCCGTCTAACCTGCGCGG 191315 29 100.0 32 ............................. CAGGGTCGCCGTATCCTTCGCCAGATGGCGGA 191254 29 100.0 32 ............................. TTACAAATCGCCTCGGGTGGTGCTCTGAAATA 191193 29 100.0 32 ............................. GAAATTCTGATTTTTTTACCGTGGATTTCCAC 191132 29 100.0 32 ............................. GCTATGGGAGTTAATGACATGGAACAGAAATT 191071 29 100.0 32 ............................. GCTCTTCTTCCTCCGCGAGTTCTGCATACGTG 191010 29 100.0 32 ............................. GATTCTAATTGACGTTGTAATAATCGTGTGTG 190949 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 190888 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGGCGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCGGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24481-25178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGUTT010000042.1 Klebsiella pneumoniae strain SCPM-O-B-8914 (4PKP/19c) 42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24481 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 24542 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 24603 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 24664 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 24725 28 93.1 32 .....-.......T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 24785 29 93.1 32 ............TC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG 24846 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAAATGGGACCTGTTC C [24857] 24908 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 24969 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 25029 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 25090 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 25151 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //