Array 1 5479-4054 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAT01000009.1 Helicobacter sp. 13S00482-2 NODE_9_length_67697_cov_117.156_ID_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5478 36 100.0 30 .................................... ATGATAAACATAGAATTGTTTATGTTTTTT 5412 36 100.0 29 .................................... TATCCTGAGTTTTAAGAATCAAGGGCAAG 5347 36 100.0 30 .................................... TTGTCTATTTTTTCCATAATAGAAGGTAAT 5281 36 100.0 30 .................................... AGGACATATTAATACTTTTTAACAAAAGTA 5215 36 100.0 30 .................................... GAACTCACATTATTAGCATTACCAATGACA 5149 36 100.0 30 .................................... CTGCCTTGAGTTTGGATAACTTATCAAAAG 5083 36 100.0 30 .................................... AGGACATATTAATACTTTTTAACAAAAGTA 5017 36 100.0 30 .................................... CTGCCTTGAGTTTGGATAACTTATCAAAAG 4951 36 100.0 30 .................................... CTAAAGCCCAAGCAGAACAAACTGCCCAAA 4885 36 100.0 29 .................................... TGTGGTATCGCCGTTTTTGCTCCCCATAA 4820 36 100.0 31 .................................... AATTTTGATGAAATTATTGCAGAGAAGTATG 4753 36 100.0 30 .................................... CTAGAAAGGTTTTTATCACATTCTATATAA 4687 36 100.0 30 .................................... CTTTGGTAGCTTGATTAAAAATGCCCTATC 4621 36 100.0 30 .................................... CTTCTGAAGATTCAAGTGAATATCTCATGT 4555 36 100.0 30 .................................... TAGAGGAGGGAACTATTTACATTGGACTTC 4489 36 100.0 31 .................................... TTTCTTTTCTATTTTTGATGGTATTCAAAAT 4422 36 100.0 30 .................................... TCAGGTTGTCCCTTTCTTTCGATTGGGACA 4356 36 100.0 30 .................................... TCATTCGTTTTGGAAATATGAATTTTATTA 4290 36 100.0 30 .................................... CTTTTAAGACTTTCAATAATAAATTCAATA 4224 36 100.0 29 .................................... CAACCGAAGATATTTGGATAGCAAATGCT 4159 36 100.0 30 .................................... CCGAACTCGCCATCTGTGTTCCTATCAGTG ACGA [4147] 4089 36 94.4 0 ...C.......................A........ | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.7 30 ATTTTAGCATAAGAAGATTTAAGAACTGCCTAAAAC # Left flank : TAAGAAGTCTATTTTTTAAATATTGATTATTTTTTCAAATTCTCTCATAGATTTATTATTATTTTAAAACTAAACCTACTAAATAGTTTTAAAATATAATTTTAAAACTGAATATACTAAAAATTTATAAAAATAGTGAATAAAAAATACTACTCAAAATAGAAATAATTTAATTTCTAATAAATACACATTCAAAGTTAAGGTTTCTGATTCAGGGAATGGATTTTTTGTGGGGATTGAAAAATGTTTTGGGAATATAAAAGGCGATTTGACTAGGGATATTTGAAATCTAGTTTCTGATAAGCTAATCTTTATGTTATCTTATTTTTTGCTGATACAAAATAATTTCTGATTTAGGGTTTTTGGGGGATTGTAACCCCGCACGGAACCCAATAACCGTTTATTCTAGGCAGTTCTTAAATCTTCTGATGCAATTTTAGCATATTTCAATGCTATTTATCCTTAAAATTCCCACAATACAGGGGAAATCAAGAGGGTCT # Right flank : ACAACACTCGAAAGCAGCGTACCATCTCCACCCAATTTTTTGAAAGGATTTCAGAAATAATCGAAAACATTAGTGAAGCACAACCACAATTTATGAAAAGCAACTTTATTTGTCCCCGTTGTAATGTACATGCTCAGATGGAATGGAGAAAATTTGTTACAATTTTTTTTGCAGAAATCGATAGAGCAACTTGTTGGGTTTGTGAAAAGCCAAGCATATGGTATTCAAAAAAAATGGTTTATCCCGAACCAATACTTGTTGATTCTCCTAATAAAGATTTACCTGAAGACATCAAAGAAATCTATAAAGAGACTGCTTTGATTGTGAATTATTCTCCAAGAGGAGCCTGTGCTTTGCTAAGATTAGCGTTACAAAAATTAACGCAACATTTAGGACAAGGTGATAAAAATCTTAATGATGTTATTGCAGAACTAGTAAAACAGGGTTTGCCTTCAAAAGTTCAAAAGGCACTAGATATTGTCAGAGTTGTTGGTAATAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAAGAAGATTTAAGAACTGCCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 103-600 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAT01000022.1 Helicobacter sp. 13S00482-2 NODE_22_length_22044_cov_134.957_ID_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 103 35 75.0 30 CCAA....-..........AG....T...G...... GACACCCACTGAAAATTATGTGAAATATTA 168 36 97.2 30 .........................T.......... TGCTTAATTTCCTGACATCTTCAAATATAG 234 36 100.0 30 .................................... TTAATATAGGCTGTGCCTGGAGCATTCCAT 300 36 100.0 30 .................................... TTTATTTATACATTTTTATCGAAAACGAAA 366 36 100.0 30 .................................... CAAGAATACCTTCAGAATTGCTATAGAACT 432 36 100.0 31 .................................... TAAATAATGTTTCTTTGAGCATTGGTGTTAA 499 36 100.0 30 .................................... TAGCATTGCTAGAGAGATTTTTGTCTTCAA 565 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 96.5 30 GTTTTAGGCAGTTCTTAAATCTTCTCATGCTAAAAT # Left flank : ATATTGATTTCTTTAGATAGCTTCTCTAAATATTTTTTTGCGTATTGTGTTTGGAATTCTTGAATCTTTTGTTTTGAAAACAAATCACTTTTATTATAAACAC # Right flank : TAGACCCTCTTGATTTCCCGTCTATTGTGGGAATTTTAAGGATAAATAGCATTAAAATATGCTAAAATTCCATCAGAAGATTTAAGAACTGCCTAGAATAAACGGTTATTGGGTTCCGTGCGGGGTTACAATCCCCTAAAAACCCTAAAATATATCAAAATAACTACAAAAATATCTTAAAACAATACAAGCTGTCTTGGTTTCCTTGCTTCTTCTAATTCACTTTTTCTTCCTAGCAATAACCTCATATGGTCAAATTGTTTTTCAGTCAATATCAGTGCCCTAATATTTCCTTTGGCAGGTAGAATCAAATCAAGTCTATCTAAATGTGAATTTGCACTAGCCACACCCTTGCAAATACGAACATACACCGAAAATTGCAACATTATAAACCCATCTTTTATGAGTTCTTTTCTGAACTTTGCGGAATTTTTTCTATCTTCTTTAGTATGCGTTGGCATATCAAACATCACTAAAACTCTCATAAACTTCTCTTCCAT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGGCAGTTCTTAAATCTTCTCATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 5227-5723 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLAT01000006.1 Helicobacter sp. 13S00482-2 NODE_6_length_122505_cov_129.85_ID_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5227 36 100.0 29 .................................... TTAAAAGGATCAATCATTTTTCCAGATGA 5292 36 100.0 30 .................................... CTAATATTATACATACCTCACCCATTGAAT 5358 36 100.0 30 .................................... GGGAAAGCTATTGCAATTTCTTATTAAGCA 5424 36 100.0 30 .................................... TAACTGGGCTTGTATTTTATCTTGACCTTC 5490 36 100.0 31 .................................... TAGAATACTTTCATCAACTCACCTCAGAAAA 5557 36 100.0 29 .................................... AGGATTTTTGTTTAACGGACGTGGAACAT 5622 36 100.0 30 .................................... CCACATCAAAAGCGATTTTCTCTTTTTGTC 5688 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 30 GTTTTAGGCAGTTCTTAAATCTTCTCATGCTAAAAT # Left flank : TTAGCAATAGCTATTAGTTTTGGGTTCTCTTGCTGATTATTATCATTATTATTGGCCATCTCTCTACTCCCTATCCCAAACGCTATTGATTGATTTTACAAGAGCTTCATTATCATCATCTATTTTTTTATTTCTTTTTTTGATTTCATCTAGATTGTCTTTAGCTGTTTGATTGGCATCTTTTGCTGCTTTTGCACCTGCGATAGCACCCCATATGGAGCCTACTCCACTTAGGAGTGATCCCACTTCTGCATAACTCTGAGGCAAAAAAGGCTTGGTAGCATTCCAGGCCTTGCCATACCAAGTACCACTATTGCCATTTTGAGCATATGGGGCATAACTATTTGGATTGAATGTAGATCCATGTTTGGGCGTTCTTGTGAGTGGAGAGTTATTTGCAGAAGAGTTTGTGTCTATATAATTAAAAGGGCTATAGTGATACCCTATACCTAAATTACTCATATCCTTTGGCTCAAAATTTCTATAGTTATACCAGTTCA # Right flank : TAGACCCTCTTGATTTCCCGTCTATTGTGGGAATTTTAAGGATAAATAGCATTGAAATATGCTAAAATTCCATCAGAAGATTTAAGAACTGCCTAGAATAAACGGTTATTGGGTTCCGTGCGGGGTTACAATCCCCCAAAAACCCTAAAATATATCAAAACAACTACAAAAATATCTTAAAACAATACAAGCTGTCTTGGTTTCCTTGCTTCTTCTAATTCACTTTTTCTTCCTAGCAATAACCTCATATGGTCAAATTGTTTTTCAGTCAATATCAGTGCCCTAATATTTCCTTTGGCAGGTAGAATCAAATCCAGTGTATCTTTTTTAATCCCTATGGAATCGCTAGAACTCAAAACCACACTCTATATCAAATATAATCTCTTACTCACGCCTAAAATTCTCTAGAATTCTAATCAATGAAAACAAATACGCAATAAATTTTACTAAATCATAAGCTTAAAAATCTAAATTCAAAATATTTTAATGATTAATGAAGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGGCAGTTCTTAAATCTTCTCATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //