Array 1 623-3032 **** Predicted by CRISPRDetect 2.4 ***
>NZ_OAAI01000029.1 Neisseria meningitidis strain Neisseria meningitidis isolate R477, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
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623 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG
689 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT
755 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA
821 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG
887 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA
953 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA
1019 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG
1085 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG
1151 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG
1217 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG
1283 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT
1349 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC
1415 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG
1481 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT
1547 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG
1613 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT
1679 36 100.0 30 .................................... ACGAGTTTGGCTGCGCCCAAGTCTTTTGCG
1745 36 100.0 30 .................................... CCACTTTCGTGGGAATGACGGGATTTTAGG
1811 36 100.0 30 .................................... CCCATCAGCAGCACCCTGCCTTCAGACGGC
1877 36 100.0 30 .................................... GAAGGTGCGGCGGAAGGCGGCAGCAGCCAT
1943 36 100.0 30 .................................... CGCGTGTAGCTGTATTTGTCGATGGCGGCT
2009 36 100.0 30 .................................... CAACCCGTATGCCGCCTGCCTGTTTTTCTT
2075 36 100.0 30 .................................... CACGCATCCGAGCTGCCCCACACTGCCCGA
2141 36 100.0 30 .................................... GATTGGATTCGCCGGTAAGATGGCTCTCGT
2207 36 100.0 30 .................................... AGATTATACGGGCGCGGTGCGGCGGACATG
2273 36 100.0 28 .................................... CAAATAGGGCAACGCCGTACTGGTTTTT
2337 36 100.0 30 .................................... TCGGCGGTCAATACCAATGCCGAACATTTG
2403 36 100.0 30 .................................... TTGGCGGTATCTATGGCCTCGATTTGTTTG
2469 36 100.0 30 .................................... GCGGTACGCACGCACGCGTTCTTTGTAGTG
2535 36 100.0 30 .................................... CCGCTCTGCCGTCATTCCCACGAAAGTGGG
2601 36 100.0 30 .................................... CGGATAACGTGGGTAACGCCCATGTCGTAG
2667 36 100.0 30 .................................... TATCTTGGCTGCCTTGTGTGGATGGCGCGC
2733 36 100.0 30 .................................... ACCAAATGCCCAACCATTCGCCCACGGCAT
2799 36 100.0 30 .................................... AAAGAAATGCCTGACGCAAGCTATTGCGAA
2865 36 100.0 30 .................................... TCGAAATAGGCGGTCAGGTGATTGCCCTGC
2931 36 100.0 30 .................................... TTCCTCGCCGAAGAAGCACCGGACAACGTT
2997 36 100.0 0 .................................... |
========== ====== ====== ====== ==================================== ============================== ==================
37 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT]
# Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37
# Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41
# AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [4.5,0.68 Confidence: HIGH]
# Array family : II-C [Matched known repeat from this family],
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