Array 1 26289-24735 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZZP01000019.1 Neisseria meningitidis strain Neisseria meningitidis isolate R297, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26288 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 26222 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 26156 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 26090 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 26024 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 25958 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 25892 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 25826 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 25760 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 25694 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25628 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 25562 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 25496 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 25430 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 25364 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 25298 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 25232 36 100.0 30 .................................... CCACTTTCGTGGGAATGACGGGATTTTAGG 25166 36 100.0 30 .................................... CCCATCAGCAGCACCCTGCCTTCAGACGGC 25100 36 100.0 30 .................................... GAAGGTGCGGCGGAAGGCGGCAGCAGCCAT 25034 36 100.0 30 .................................... CGCGTGTAGCTGTATTTGTCGATGGCGGCT 24968 36 100.0 30 .................................... TGGCAGAAAGCGGCATGACCATGATGTGCG 24902 36 100.0 30 .................................... CGGCTTCGCCGCCTTGTCCTGATTTTTGTT 24836 36 100.0 30 .................................... TTCATTTTTGGGTTTGTCCGTTGTTGCCGC 24770 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //