Array 1 111968-112884 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019309.1 Intestinibaculum porci strain SG0102 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 111968 33 100.0 36 ................................. CTCCTTTTTTATCATAATATAAGCGCCTGTGAAGGC 112037 33 100.0 36 ................................. TAACAAGACCACGAAAAGCGAGATCATCGCATCTAT 112106 33 100.0 35 ................................. ACCTACAATTTATATTTAATTGAAAGCTGTTTTGC 112174 33 100.0 36 ................................. AAGAAATACAGTTTTTTATACTTTTAAGGAAATATT 112243 33 100.0 35 ................................. GCCATAATGTTTTGTAATCCCATTAAGCTTTACGC 112311 33 100.0 34 ................................. CCGGCATTAAGTGCGTACCGCTCACATGTGGAGA 112378 33 100.0 34 ................................. ACTTTACCGGATATCGTGTCTTGCAAAGCTCATA 112445 33 100.0 34 ................................. GCGTCTGCCTTTAGTATTTGCAATGTCTTCTTTG 112512 33 100.0 34 ................................. CTGGATTTTTGATTTATGATCTCGAGCACGTGCT 112579 33 100.0 34 ................................. AGCGTGTCCGTTTTCGTTTTTGGCCATGTTCCAA 112646 33 100.0 34 ................................. TCCCACATCTTAGCGAGATCAGCAAAGGCTTTGG 112713 33 100.0 37 ................................. CAAATAGTGAGGCATGCGTAAATGCTCAGCATATTGG 112783 33 100.0 36 ................................. CAGGTGGTAAAAAAGGTAGAAAGTATTCTACATATC 112852 33 93.9 0 .....................A......A.... | ========== ====== ====== ====== ================================= ===================================== ================== 14 33 99.6 35 GTCGCATTCCTAATGGAATGCGTGGATTGAAAT # Left flank : GGATATTTGCAAAACACTTCTGCCAGTCGATGAAAATGAAGCTTATAAGGATTTCGATAAAAGACCCAATCTTCATTTTAAATGGTGAATAATTAAATTGTGCTAAATAATATCAGTGATTTGATTGAAAAGAACCATTTCCATTAAAAATTGATGACAAGTAGGTATATCATTTATAACTTTCGCATAAATGTTCAAGTTTAAGTGATAAATGTATTTACTAAATAGATTAGATGGATAATCATTAAAATCAATCATAAAACATTTTAATTATATACTGTATTTAGATTCTTGAAATTAGTAAAGATAACTATGATACAGTATTAATATTTACAGAAATAACTGTGCGAAGGTAAAGCTAACATAAAACTCTTATAAGGTTCGCACAATTAAATTGTTTATATAGTAAAATATATTTGTAAAGATCAAAACAGAAGAAGACTATGTCTAATTTTCCAAAATTATTTCCTTGTAAAATATGTAAAAACATAAAAAATACA # Right flank : TCATTCTCTTTTGCGGATCTCACGGCTTTTCTCATCATGTGGGTTGGAATTTTTTGAAAGAGGGATAATTTCGCCAATTGATTTAATTACTTAGTTTTCGCACTTCAAAAACCTTAATAAATCCTTTTGCTATAAGGAAAATTAGTTGCTAAAATTCAATTTGACTATATTGGTGAAATTAACTTTCTAAACTATTCAGGAGCTAATTTCATCATTGCATCCAATGCTTCTGTGATAATGAGCGGTGCATCAGCCTTATACTTCTTTATAGTGCTATTAAGGCAGTCTAAAAAAGATGTTGAAAATATTATTGCTTCTTATCTCTAGTTTCATCAAGCATTATATAGAAGAGATACCAATAGTATGTGGATCATTTTCTTTTCTCAAAGCCTATTCTAGTGTTATATAGCCGTGAAAATAATCGAGGTATGAGATACTAATGCTTCCATAGAGTTACAGTGAAATTCTTTAACAAGAGAGAATTCTTTAGCAATTTTGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTCCTAATGGAATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 3163865-3160787 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019309.1 Intestinibaculum porci strain SG0102 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 3163864 36 100.0 30 .................................... TTTTGTCGTTCCTGTCGTGTCCTGTTCGGT 3163798 36 100.0 30 .................................... ATAATGACAACGATTGTTTATATTTACGTT 3163732 36 100.0 30 .................................... TAGTGACATGGGTTCTAAAGCTTTAAGCGC 3163666 36 100.0 30 .................................... TCTATTGGCGGTCATATCGTTACAGGGTTA 3163600 36 100.0 30 .................................... CATCATTTACAAATAGAGAAAGAGGAGAAG 3163534 36 100.0 30 .................................... TCTCTCAAATCATATAACTTCAACATCACA 3163468 36 100.0 30 .................................... ATAAAGCATAATAAGATTATCATATGACGT 3163402 36 100.0 30 .................................... TGCTTCATAGACAGTTAATCCAGCATACGG 3163336 36 100.0 30 .................................... GGAGAAGTACTTAAGGCCAGAGACGCTCTT 3163270 36 100.0 30 .................................... CAATCGAGGTTATTGATGAGCCTATGGGTG 3163204 36 100.0 30 .................................... TATGATTGCAATCTTAGAAGGATATGATCT 3163138 36 100.0 30 .................................... TAAATCTGCATACATGATATTCTTGTCTAG 3163072 36 100.0 30 .................................... AAGGATTTCAAAGGAGTTGAAAAAATCTTA 3163006 36 100.0 30 .................................... CGAGCCCACTTGCATTTTTCATCTTACCGA 3162940 36 97.2 30 .............A...................... TAGCGTTTTGAATTTTTGTTGAATATGTCC 3162874 36 100.0 30 .................................... CGGAAGCCTGTATTGTTCCATGAGTCACCC 3162808 36 100.0 30 .................................... CAAATATCAGCTTCTCAAGTCTTTATAAAA 3162742 36 100.0 30 .................................... TCAGTGCTACGCAAACGGCACCTGGATCGA 3162676 36 100.0 30 .................................... AAAAGACGGCAAAATGCAGCCGGACAAAAA 3162610 36 100.0 30 .................................... GTGGTGCAAAAAAAATGGAACAATGCCATA 3162544 36 100.0 32 .................................... CAAAGCGCGATGTGCTTAGATACGCGTCATGT 3162476 36 100.0 30 .................................... TCCGCAGTCGTAAATCTATTGATAACTTCA 3162410 36 100.0 30 .................................... ATGTCAGCAAAAGATGCTGAGATACGCGCG 3162344 36 100.0 30 .................................... AATATATGGATCCGGAAAATACAACATCAA 3162278 36 100.0 30 .................................... GTTTTCTATGTTTGATGCTCCCTTGATGGT 3162212 36 100.0 30 .................................... CCGATAGCGCCCAACATTGACGCGTTAGGT 3162146 36 100.0 30 .................................... TCAGGGATTTAATGATCTTTTCTCTTTTGA 3162080 36 100.0 30 .................................... TAGTTATTCAACGTTGAGCGGATCAAACTC 3162014 36 100.0 30 .................................... GGAATATGCTGGAACATGACGGAACAGTCA 3161948 36 100.0 30 .................................... CTGATTGACCAGGTAAGTCTTACCGCTGAA 3161882 36 100.0 30 .................................... AAGAAATACTTTGGCTGTCGGAGCTGATTC 3161816 36 100.0 30 .................................... GTCACGGTGCTTTTGACATTGATGCAGATC 3161750 36 100.0 30 .................................... ACGTAGTTCTTAAGAAGATGTGGGCTAATG 3161684 36 100.0 30 .................................... TACTCGGTCCGCGCTTAGAGTGCCCTCAAC 3161618 36 100.0 30 .................................... AACAACATTAAAAATTATGGCAAGCGCTGA 3161552 36 100.0 30 .................................... GCAGTCTGTTGTATCGATCTCTCTTGTTGC 3161486 36 100.0 30 .................................... AAGACGGCTATACAATCGCAGACGATGACA 3161420 36 100.0 30 .................................... GCGCAAGGCCTTATAACGGCATCGGTAAAG 3161354 36 100.0 30 .................................... TGGTGCAACTGCTGAACCATGTCATAACAA 3161288 36 100.0 30 .................................... AATTAATTGGTAACTTTTTTCTACGAGTCA 3161222 36 100.0 30 .................................... ATCGACTATAACATTCAGCGCTATGGGGTT 3161156 36 100.0 30 .................................... TTGCGTGGAAAACATCCATCAAACCGAATC 3161090 36 97.2 30 ...............T.................... TACTATGGGCAGTAAAAACAGAGTTGAATT 3161024 36 97.2 30 ...............T.................... TGAAAATGTGGGTTGACTCACTTTTTTTGT 3160958 36 91.7 30 ...............T..............C....T TAGGAAGGGAACCATTAGCATTAGATTTGA 3160892 36 80.6 34 .C.....A...A...G...T.......T.......T GCTTTAGAAAAGTGCGCACCTCGTACTTTTCTAA 3160822 36 75.0 0 ......TA....CT.......A..T....T.A...T | ========== ====== ====== ====== ==================================== ================================== ================== 47 36 98.7 30 GTTTTAGTGGTGTGTAATTCTGAACTGCTCTCAAAC # Left flank : TAATAAAATCGTGCTAGATATCATAGAAGAATTTAATGTGGATTTCTCATTCGATGATGATTTACCATTGGAAGGATATCTTAAAGCCATTAACTTAAAAATAACTAAAGATCCAGAAGAACCGATGTTTGATACATTCCTCAATTACATAGAATTAATCTCAGAGTTAACACCTAAGACACCACTTATTATTTGTAATTGCCTCAGCTATTTCACAAAACATGAAATAGAAGAACTATGTAAGTACATGAATTATAAATGTATGAATGTTCTATTCATTGAAAATCATTGCAATGAGTTAATACCAGATTGTCATCAATATATTATTGATGATGACCTATGTATGATATAAACTATAAGTAGTTACATACCTAAGCAGTTGAATTACCTACAGCATGGTAACTGTAGCCTTTAAAACCAATATAATGCGTTTAATAGCCAATTATAGTCCTTCCTATCGGTAATGAAGGCCGAAAATCGACTTGAAAACCTTATTTGAG # Right flank : TTTATATAAAATCCTCAAAATAAGATCTCCCTTTGTTCTCTGTGCTATCGTTTTGGACTGTTTATTATTAATGATGGCATATATTGGTGCAACATTGGAATTAAATGATGTTTAGTGAGTAGAAACTATTTGTTATCATATGCATGTAGAATGCATATGATAACAAAAACCCTTTATTTCGTCTTTGATGCATATAAATTAATTAAGAATGCACGAAATGATGTGTCTTATAATGTAATTTGTAATAAAATTATTATATAAGATATTGTATGAAAACGCTTTACAATATGTGGGATAGTGTTAAAATAACTATAAGGCACAAGTATTAAACTTGTTTGACCGAACAACGACAGAGATTACGATGCTTTTGCATTCGTTCCTCCTAAGCCTTTTTTAGGCTTGATCGCTTCCAAATTAATTGTCACTATCATTGAACTGAGATCTCTGTCGATTTGAAGATTTGTAGCTATGCATGATCTGCATAGCTCTTCTTATTTTTA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGTGTGTAATTCTGAACTGCTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //