Array 1 38390-35614 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFCW01000016.1 Frankia sp. R43 contig016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 38389 29 96.6 32 ............................T CCGAGCTGGTAGCTCGGCAGGCGAACCTCCGG 38328 29 100.0 32 ............................. GACACGACCTCGACCGATCGGCTCATCGGGTG 38267 29 100.0 32 ............................. GGTTCTGACCTGGGTGTTAGTGCGTTAGCGGC 38206 29 100.0 32 ............................. TCCGACATGCTGCCGCTGTCCGCGCAGGTCCC 38145 29 96.6 32 ............................G CGGGGGCACCCGAGTTGGCGCTCGGGCCCCGC 38084 29 96.6 32 ............................G TGCTGTTGTTCTGTCTCGGGCTGGTAGGGACG 38023 29 93.1 32 ......................C.....A GCGTGGATCCCTCCCCGCTGGAGACCGTGCTG 37962 29 100.0 32 ............................. GATCTGCTGTTCGTCGATCCGGCCGACTCCGA 37901 29 100.0 32 ............................. ATCGGGGACCGTCTCGCTGCGGGTACCGACCT 37840 29 100.0 32 ............................. CGACCAGCCTGGAGAGGTCATGGACGCAGAGC 37779 29 100.0 32 ............................. GGACGACGTACCGGCCTGCCGAGGAGATGAGG 37718 29 96.6 32 ............................T CTCTCCCCGTACGGCACGCTTACGACTACACG 37657 29 100.0 32 ............................. CTACCGATCCCCGTACTCGCCGCGTTCGTCGT 37596 29 100.0 32 ............................. CGATGGGAGCCACCACCATGACGCAGGCCGAT 37535 29 96.6 32 ............................T CGGGAAAAAGAGCTCGGGGTTCTCATCGCGGC 37474 29 100.0 32 ............................. GACAGCACCTTCGAAGGCACGAATTCCTGGGA 37413 29 100.0 32 ............................. GGTGCGGCCACCGTGCGCGCTGCGCAGCAGGC 37352 29 100.0 32 ............................. CGTCATCGTCATCGGTCGGGGGTTCGATGGGG 37291 29 96.6 32 ............................T TCTTGGATCATCGTCCCACAGATGGACGGTCA 37230 29 100.0 32 ............................. CACCCCACAATCCGGCCGATCAGCCACACAGT 37169 29 100.0 32 ............................. GTCCGTGATGGTGGTGCCGGTCGGGATCGGCT 37108 29 96.6 32 ............................G CTGTACCCGACGTGGGGAGCAGACAGGTCCAG 37047 29 100.0 32 ............................. TGCTCGGTCCAGCCGCAGGTGCAGGACGCGGT 36986 29 96.6 32 ............................T TGGCGGCCCGGAATGGGGTGTGTCCACATGTG 36925 29 100.0 32 ............................. ACGCCGAGCGGCACGTAATCGGGCCCAGCCGT 36864 29 100.0 32 ............................. AGACGATCTCACCCTTCACGGCACAGGTCACG 36803 29 100.0 32 ............................. AGACGATCTCACCCTTCACGGCACAGGTCACG 36742 29 100.0 32 ............................. ACCACGGCGGCGCTGGGCTGGGTCACCGTCGC 36681 29 100.0 32 ............................. GGATGGAAGTTCCGGTGCTGGCGTCTGAGATC 36620 29 100.0 32 ............................. CCACTGGAGGCCGAACAGGCAGGGTGGGCGCT 36559 29 96.6 32 ............................T CCACCTCGCGGAGCGCGCCGCGCGTCTCGCTC C [36554] 36497 29 100.0 32 ............................. CGGATCTGCTCGACGCCGAGCTGGGCCGCGTC 36436 29 100.0 32 ............................. GGCGGGCCCCAGCCACCGGCCGGCACGTCACC 36375 29 100.0 33 ............................. ATCGCGTTTGCCGATCTGTCCGGCCACTTCCCA 36313 29 96.6 32 ............................G GCGGGCGCTGACGTTGTTCGTATCGACGTCTG 36252 29 96.6 32 ....................A........ CTCGAAATCGCCCAGTCGCGTGGATGGGGCAC 36191 29 96.6 32 ................T............ CGCAGGTCAGACCGCGTCTCCGGAGGACTCCG 36130 29 96.6 32 ............................T GCGCTTCCGGTACCTCAGTGCCATGCCAGGTG 36069 29 100.0 32 ............................. CGCACCATCCGCAGCATCCGCTCCCCGACCGC 36008 29 100.0 32 ............................. CTGCGGTCCACCGGCGACGCGCTCGGGGGCAT 35947 29 100.0 32 ............................. ATCCTCACCTCCAACGCCACCCCCCTCACCAC 35886 29 96.6 32 .................A........... AGACCGCGACGAAGTGGGCTGGACTCGCGGCC 35825 29 93.1 32 .........A..............A.... GACCGGCTGCGGGTCGCCCAGGGGCACCGGAC 35764 29 96.6 32 ............................G GACGCTCAGGGTGAGTGGACGGACGGTCCCGT 35703 29 100.0 32 ............................. GCGCCCAACGGGGGCACGTCGTCGTCCGAGCC 35642 29 93.1 0 ............T.........A...... | ========== ====== ====== ====== ============================= ================================= ================== 46 29 98.4 32 GTCGTCCCCGCGCACGCGGGGGTCTTCCC # Left flank : ATGGCCCGCATCGTCCACGACATCAAGGACCTCCTCGTCGACGGAGACAGCCCCACTCCAGACGAGGACGGTCTGCACCTGTGGGACGAAGTCGACGGCGAGGTCCCCGGCGGCGTCAACTGGGCTGCCGAGCTCGCCGACGGGTGGGACGACCTCATCAGCCTCGGAATCACCGGACCCGACGTCACACCACCGCCGTTCTGATGACCGTCATCGTCCTCATCGCGGCTCCCGAAGGCCTGCGCGGTCACCTCACCCGCTGGATGATCGAAATCGCCGCCGGTGTCTACGTGGGTAACCCCGGCGCCCGCATCCGTGACCGCCTCTGGACCCTGCTCGCCCAACGTATCGGAGACGGCCAGGCAGTCATGATCGAACCCGCCAAAAACGAACAAGGCTGGGCCGCCCGCACCGCCGGCCGCGACCGCTACCACCCCATCGACTACGACGGACTGATGCTATTCGCCCGCCCCCGCAGCTAAAACCCCAGCTCAGCAAGT # Right flank : GTCGTCCACCCCTACACCGACGCAGGCGGCAAGTCGTTCCCGCTGTTCCCACGGGCCGCCGTTCCGGTGGCCGCCCGGGTAGTTAACAGCGTGGAGCGCGTGCCACCCGTGCTCCAAAGGAGCTGACCGTACCGCGGACCCGCGAGTGGGCGCGGAGCAACAGCCATATGGTGAGCGACCGGGGTCGCATCGCCGCGAACATCGTCGAAGCGTTCGCCAAGGCCCACTGACCACTTCGGCTCGACCGGCGGTCGTGTGCCGTCGGCGGGCTGGCGCACGACGCTCGGACCTCGAGACCGCGGGTTATGCGGTTCGCGCTGGACCGGGTCGGGCTGTTTCGCGGCGCGGCGGCGCTGGTGTCCAGATATACAGCCCACGGACAATGCGGGCCGCCGACGGCGCAGGGATGTCGGTGTCGACCGTGGCCGAAGCCAGCACGAGCAGGCCAGGTCATCGACGCAGACCCGGACGGCGAGGACGAACAGACTACCGGGCACACC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47965-48597 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFCW01000016.1 Frankia sp. R43 contig016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 47965 29 96.6 32 ...A......................... ATCCGCCACACCGTGCACGGGACCCGTGAGGA 48026 29 100.0 33 ............................. CGGATCGGCCTCGCCACCGCTACGTCCACGGTG 48088 29 100.0 32 ............................. GTGACACCTGACAGGATCTCGCAGCTTGCCCT 48149 29 96.6 32 ............................G CGGACGATGTAGCCCTCGGCGTCGGTGCCGTG 48210 29 93.1 32 ........................G...T CAGTTTCATGCACCAGGCGCAGGGCTCCGTGG 48271 29 100.0 32 ............................. TGACCACGACAGAAGGACCGGAGGCCGCAGCG 48332 29 100.0 32 ............................. CGCCGGGTCTGACACCCGCACTGCCACACCCA 48393 29 96.6 32 ............................G CAGGTCATGCTGTTCCACCCGGACCAGGTCTC 48454 29 93.1 25 .................C..........G CCATCACGTCCGGCGTGGCCGTGGC Deletion [48508] 48508 29 96.6 32 A............................ GGGCTGAACGCCTGGTCGCGCACGGACGGCGA 48569 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.5 32 GTCGTCCCCGCGCACGCGGGGGTCTTCCC # Left flank : AGCACCAGCCGCGGAATGATGCCACTGACGACTCTGCCGCACCGTCAGTCCCCGCCAACCCAAACCAACCGCCTGCACCCGAGCAGCCAGCCCTTCATCCTTCATCTGAAACGCCGGAGTCGCCTTGCCCACATCATGCAACCCGCACAGCAACGCAAACAGCACCCGACCTTGCCCATCACTGCAGGCATCCAGAAACCGTCGCACCGAAGAAGAAAGGTACCGATCGAAAACCAGCTCACCGACCGCCGCCGCGTCCAACAGATGCCCCAGCAGAAGATGCGCCGAACCCCGACCGTTTCGCGGCTGCGACTTCCCCCACACAACACCCAGCGCCGTATCCTGCAAGGGACCCCCCAAGGCGACCTAACAACCCACGATCCAACCATCACCAGGCCCCGCCAAGGCCAGCGCCCTCATCGCCAGGAACAAGATGATCACGCGGTGGGCCACTGATAATTTTCGGCACCAATGAGCTGCAAACCCCCAGGTCAGCAAGT # Right flank : CCAGCTGACCGGAGGGGCCGCCACGCACACGAGGCCACGCAACGGCCATCCTGGAACCATGTAATTTCGCGTATACGCGTCCAGTGCACCTGCGCCTGCCGAATCGTATAGATGATCGCGGCCGTTGAGGTAGCCACCCGACCAGTGAGGGCAGCGCGGCGGAGGTGGTGACGTACCCGCCCACGACGACCGCGCGCCGCCGCCGGCAGTCCTCTCTGAGGCCCAGAGCAGGACCGATGGCCTTTGTAAGCGGCAAACGTCGCTTGACGTGTCACGATGCGTAGCGCGGGAGATTGATCGCGGTACTTGGCAGGATGGGCTGTTATGGGCACGGGGGATCCCACCACCGCGCGCGGCGGGCCGGCGGGAGTGGACGCATTCGTCTCCTACACGGGGGCGGACGAGGCGTGGGCGCTGTGGGTTGCCGCGGTGTTGGAGGCCGAGGGCCAGCGGGTTCGGGTGCAGGCGTGGGACTCGCCGGCAGGGACGAACTTCGTCGC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCACGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //