Array 1 15332-17984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYNJ01000193.1 Thalassomonas viridans strain XOM25 contig_193, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15332 29 100.0 32 ............................. CCGATCAAGATTACGGCCTGGACAGTGTTATG 15393 29 100.0 32 ............................. CGCTGATACCATCACCATGATGATAAAAAGCC 15454 29 100.0 32 ............................. CTTTTCGGCTATTTGCACCTTGTAAAGGTAAA 15515 29 100.0 32 ............................. TACTGAATGTTAAAGCCGAAGGTGGCGAAGAG 15576 29 100.0 32 ............................. CGGTTCACGCACTCTTTTCGCATTATCTTGGA 15637 29 100.0 32 ............................. GATAGGTTATTAAAATAACGGTTTTAGTAAGT 15698 29 100.0 32 ............................. CCACCGCCGGCCATGCTTTCTGGATGCCTCAT 15759 29 100.0 32 ............................. CATATTTGTTGCTGGCGCCCGGCCTTTCCTTA 15820 29 100.0 32 ............................. CCCTTCTTTGATAGATAGAGATAAATAACGCT 15881 29 100.0 32 ............................. GTTTGTCCTGCCTATTATCGGTTTGAAGATTT 15942 29 100.0 32 ............................. TTGGTTAATTGCTGCTTTTTCTTCTGTAATAT 16003 29 100.0 32 ............................. ACTTCCAAGCTATGACTCGTGGCGGGGTAAGA 16064 29 100.0 32 ............................. GGCTTTAACGATTAAAATTGAGATAATAGATA 16125 29 100.0 32 ............................. CCAGGAAAGAAAACGTCAACAGCGCTACCCCA 16186 29 100.0 32 ............................. GCAAGAACAAGCCCAAGCCCTGTAAGATTGCC 16247 29 100.0 32 ............................. CCCAGAAGAAGCCGAGCGCCGTTTAGACCAAA 16308 29 100.0 32 ............................. ATAAATACAGCTTTATCATTACCGGAACAGAT 16369 29 100.0 32 ............................. CCATACGCTTGGTTATCAACTCTGCTTAAATC 16430 29 100.0 32 ............................. TGATTTTGACTTACCGGCTTTATTCCCTGATT 16491 29 100.0 32 ............................. CTCTGCCGCTTCAGCAGCCGCTTTATTTTGTT 16552 29 100.0 32 ............................. TTCTGCCAATGATAGCAGACGAGCACGATAAG 16613 29 100.0 32 ............................. GCAAATGCTGTGTTCATTAGTCAATCCGTGTA 16674 29 100.0 32 ............................. TAGGCACCTTACAATGATTAGCTTACTAGTTT 16735 29 100.0 32 ............................. CCAGATAATCAAGCTACTTGGCAAGAAAGATA 16796 29 100.0 32 ............................. ACCATAACAGAAACGCTGGCTCTATATCGAAA 16857 29 100.0 32 ............................. CTTGATACATCTTCGCTGGCATACTCAAATGA 16918 29 100.0 32 ............................. TTATTAACGGTAAATCCGGTTCTAAACGCATT 16979 29 100.0 32 ............................. TTAGCTGAGCAAAAAATTACTGACAATGGCGG 17040 29 100.0 32 ............................. TTCTGGTAAGCTTTGCTGGCAACACCTGAAAG 17101 29 100.0 32 ............................. AGCTTTCTAGTGTTTTTTCTTCCAGTCAGGAA 17162 29 100.0 32 ............................. TCTAACAAAAATGAGTAAATAGACTTTTCTGT 17223 29 100.0 32 ............................. GGGCCGTCCTCATGGTCATGTATAGAAAGGAG 17284 29 100.0 33 ............................. TTATCCAGGGAAGTTAGCAAGGCTTTTTCCCCC 17346 29 100.0 32 ............................. ACTAAACCGGGATGCTCGTATGCTACATATTC 17407 29 100.0 32 ............................. GGATAGACGAAAGCGCCGCTGCCGCGCTCAAC 17468 29 100.0 32 ............................. CATCTGCAATTTATCCCGTGCTGACATTACTG 17529 29 100.0 32 ............................. GGGAGCTTTTTAGCTCCGCCATGAGGTTTACA 17590 29 100.0 32 ............................. GCAATCTATCCGGCCCTGGTGAATGACGAAGC 17651 29 96.6 32 ............................T TTCCTCGCTCGGCGTTTTTCTTTGCGATATGC 17712 29 100.0 32 ............................. CACTTTGGGGGCATGACTGGAACTACGGTGGA 17773 29 100.0 32 ............................. TCATCGTATGAAATAGAAGTGTCATTCTTTTC 17834 29 96.6 32 ......T...................... TCCGTGTGCGCGATAAGCGGCTGGTTAACGGA 17895 29 100.0 32 ............................. GCAGATGACAAATCCTTATATGAGGAAGAGTC 17956 29 75.9 0 ...........ACT.........A..TTA | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.3 32 GTGTTCCCCACGAGCGTGGGGATGAACCG # Left flank : CTCGCCGCCGGTGACATAACGCCGCCCGAACCTTATGAAGATGCCCAGCCGCCTGCGATACCTGAGCCTGAATCAATCGGCGACAGCGGCCACCGAAGCGGTTAGGAGAAACTATGAGTATGTGTGTTGTGGTAACCGAAGCCGTGCCGCCGCGCTTGCGTGGACGCCTGGCGGTATGGCTGCTGGAAATACGCGCCGGGGTGTATATAGGTGATATTAGCCGGCGCGTGAGGGAAATGATCTGGTTCCAGGTTGGTGAACTGGCAGAGCAGGGCAATGTGGTGATGGCATGGGCCACGAATACCGAGTCTGGTTTTGACTTCATCACCTACGGAGAAAATGCGCGAATGCCGGTTGATTTGGAAGGATTGAGGCTGGTTAGATTTAAGCCGCAATTGCCTGAATCTGAACAGTAAAATTATTGCTGTTTTGCTCTTTAAAAATTTGGTAGATTTTTAATGCTTATTTTTATTTAATAAAAACAAGCATGTATATTTAGA # Right flank : ACGCCTGTCAGGGGGGAATGCCAGCCAGCTAAGTGCTGGCTGGCATTAATGCATTAGTGTTGTTCATCCTCCCGGTTTTCGTCTTTTTCATGTGCCTGCGCTTGTTTATTGTAGCTGTAGGCTTCTTGGTAGAGGTCGTCTATTCTCTGGTAGTACGCCTTTGCCTGATGCTTCAGCCAGTAGCTCATATGGCGTATGCCTTCGCTGGTTTCTTCGCTGATGCACTCCGGCTCCTGGGCTACGGCGGCGAAAGCGTCGCAGAGAAAGGCGCATTCCTCATGGAATTTTGAGAAGTCGTCGGTCAAGTCGACCAGCGCCGACAGCTGGGCTTTCCTTCTGGCGGCTTCGCTTTGCGGGATTGAAGTTGATTCAGACATGAGCTTGTTCTCCTGCAAAGGTTAGCGGCATGTTTTTGTCGATAAAGCAGTTACCGATAAAACTGTTGGCGGTAAAACAGCCGGTAAAGCCGTGGGGTGAAGTTATACCGGCATTGCTGGTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGAGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1415-4067 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYNJ01000007.1 Thalassomonas viridans strain XOM25 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1415 29 100.0 32 ............................. TGGCCGCTGCTAATCAAAAAGCCCGCCTGACT 1476 29 100.0 32 ............................. TGACCGAAAGCGCCCTTGATTTTGCCGATACC 1537 29 100.0 33 ............................. CCAGAAATTTATGGATACCTGTTGCCGGTTCGC 1599 29 100.0 32 ............................. GGTATTCAGCGAAAATATCCGGAGATCCGGGT 1660 29 100.0 32 ............................. GAAAGCTGAATTGTCCGATCAAGCCGCCTTAC 1721 29 100.0 32 ............................. ACGTTGTTGGTTTAACAGTTGCGTCAACAGAC 1782 29 100.0 32 ............................. CATAGGGGCTTCTGGTAGTAACTGCTCGACCG 1843 29 100.0 32 ............................. GGACCAAATAACCACCAGAATGGGGCATGGTC 1904 29 100.0 32 ............................. GCGCTATGTTCTTTTTTCTTTGTGAATGTCAC 1965 29 100.0 32 ............................. CTCTGGTAATTGATTATTGATATGATTTAAAG 2026 29 100.0 32 ............................. CCGTTTTCTATAACCGGGGTATTAAACCATTC 2087 29 100.0 32 ............................. CAAAACCTCAAATCCATTTCGGCCATCAACAC 2148 29 100.0 32 ............................. TGAAATCAATTGAATCAGAGATAAGTGAAATA 2209 29 96.6 32 ...........A................. GACAGAGGGTTTAAATCCCAGCCTTTAATATC 2270 29 100.0 32 ............................. TTCAGCCAGCTGCCGGGATACACTCACACACA 2331 29 100.0 32 ............................. AAAGAGCAGGCCGAACGTAAATCCCGGATTAA 2392 29 100.0 32 ............................. CTAAACGGGCTAATTTCTCGTGTCATTCTCGT 2453 29 100.0 32 ............................. TTATTTGATGCGTAAACAACGGCTACTGAGAT 2514 29 100.0 32 ............................. CTCGCCGTCTTCATCGAACTCGCCGCTTAATT 2575 29 100.0 32 ............................. GCACAAATCGTCTGTTGCTTGCTCTGATTATC 2636 29 100.0 32 ............................. CGCAGTTAGGTCGCATCAATATGACCAACCAA 2697 29 100.0 32 ............................. GCGCTTGCCTGGAATGCAATTAACGCTCTTTC 2758 29 100.0 32 ............................. GGTCTATATAGCGGCGTAGTAACCAGTGTAAC 2819 29 100.0 32 ............................. GTTTGCCACATCATGGCATCCACAGGCAACGG 2880 29 100.0 32 ............................. TTGGATATTGCGTAGGGGGAGGCATGGGCGGA 2941 29 100.0 32 ............................. GGTGCGACAAACTAAGCCTTGAAGAAAAAGAA 3002 29 100.0 32 ............................. CTCGCGTATTGATATCACAAATGTCTCTGGAC 3063 29 100.0 32 ............................. AAATGATTGTCCAGCCTGTGAATGCGGTTGTG 3124 29 100.0 32 ............................. TACTAAATGGATTAATCATGTGCCACATCACC 3185 29 100.0 32 ............................. CGATTGCGTTCTTCAACGCTAAGCTGAACGTT 3246 29 100.0 32 ............................. GCCGCTGAGTACCGGTTCAATACAGCTAATTA 3307 29 96.6 32 ..........G.................. CCATAAGAAACACCTAAACCTTGTTCGCCTGG 3368 29 100.0 32 ............................. CGTGATAACACCGGCGACGATATCTACGTTAA 3429 29 100.0 32 ............................. TAGATGACGAAGCAGAGATACAAATTGACGAA 3490 29 100.0 32 ............................. GAGTGATCACCCGGCCTTCCTGAATTGTTTCT 3551 29 96.6 32 ..............T.............. AATCAATTAACGGCACAACTGATGTCAGTTAT 3612 29 96.6 32 ..............T.............. CATTTTGATTGGGTTGAGCGTATGGGGTGGCA 3673 29 96.6 32 ..............T.............. GCCCGGTACTGGCCGCCGCCGCAATCAATCAG 3734 29 96.6 32 ..............T.............. CGTTTCAGGTATCGATACCCTGACGGGAAAGA 3795 29 96.6 32 ..............T.............. GCAATGGCCGCACCTTCAAACCGGAATACTTT 3856 29 96.6 32 ..............T.............. ACAATGATGATGATTGTCTTGAACCAGAAGTT 3917 29 96.6 32 ..............T.............. CATGAACAGGCCGGTTTCTTTATTCTGGATTT 3978 29 96.6 32 ...........A................. TAACAGGAGTAGCATCATTGCCCGTCAGTATT 4039 29 93.1 0 ...........A.G............... | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.1 32 GTGTTCCCCACGGACGTGGGGATGAACCG # Left flank : CAAATGGCATTTAATGTTTTAAGGGACGTAACAACCGGAAAATATCAATTGCTGTTTAAAGACCCTATATTCAAAGACAGCAAAGGCCTGATCATCCCTAAAACAAAGTTGTCGCTAAAAGATTACATAAACAATAGCCAGAACTTGGAAGAGAATGGCGATAACGAGGCTATCAAAGAACATATAAATTATGTGTTTGAGGGTAATGTTCAATATATTGGTTTTGGTGAAGGAAATACAGGTGGTGGGCGAGTAGAAATACTCGATTGTGGTATTGAATTACGCAACAATGTTGAGGTTGTAGCTTGCTATAGAGGTTAACGGCCATCTTGCTTGGAGCTCTTTGGGATATTTGATACCTAATTAACTTCCAACCAGCTGCAAATTTAAGCCGCAATTACCTAAATCAGAACAATAAAATAACCGCTCTAGCTCTTTAAAAATTTGGTAGATTTTGGATGCTTATTTTTATTTAATAAAAACAAGCATATAATTTTAGA # Right flank : GCTTTTGGTCATCACCCAGAAATTAGCTGATTGTCAATCCAACATATTCACAATTAGAGATTTTGCCGACTGAAAAGAAGAAGCGATCCAGCCTGGCGGTCACCAGGCTGGTCGGGAAATTAATTTCTATAGCAGGCCACAACTTCAACATTGTTGCGTAACTCGATACGGCAATCGAGTATTTCAACACGACCGCCGCCGGTATTGCCTTCGCCGAAACCTATATACTGCACGTTGCCTTCGAACACATAATTGATATGTTCCTTGATAGCCTCGTTATCGCCGTTTTCTTCCAGATTGGTGCTGTCGTTGATGTAATCGGTTAAACCTGGTTTACTTTTAGGGATGCTTTTGCCGTTTCGGTCTAGGAATTTTGGTTCTTTAAACTGTAATTGATATTTGCCTGTGTTGATATTTCTCAACACTTCAAATTTAATTTGTACCTTGGTGCCATCTGCAAAGCTATATTCTAATATCGGAGTGCTGTTAAAGGTGGCGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10385-12609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYNJ01000007.1 Thalassomonas viridans strain XOM25 contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10385 29 100.0 32 ............................. CCAGCTGATCTTTACAGCCTATCCCATGAATA 10446 29 100.0 32 ............................. GTTGCTTCCCCCTGGGGGAACTCCTTAGCTGA 10507 29 100.0 32 ............................. GATCCGTGAATATAGGCGGCATCGAGATCGGA 10568 29 100.0 32 ............................. ATGATGATATTCATCAGCAGGTTTTATGCCTT 10629 29 100.0 32 ............................. CGGTGATTAGCGTGATCACCTCTATCATCTCA 10690 29 100.0 32 ............................. GCCGGGATGATATGCAGGTAATCATCTTGAGG 10751 29 100.0 32 ............................. CCGCGGCATGAGATGGCACTTCAACGAACTCT 10812 29 100.0 32 ............................. ACAAACTGACCATTGGCATCCGTTTGCCAGCT 10873 29 100.0 32 ............................. GGGTGGACGATTATTACGAATACAACGCCTCG 10934 29 100.0 32 ............................. GCCGTAAAAGTCCCAGGGGCAAAGGGCGCTTT 10995 29 100.0 32 ............................. TCCTTAGTAAAACTTTTCTTAATACGTTCGCA 11056 29 100.0 32 ............................. TTTAGAGGATTATCTGAATTCGTTTTCATCCA 11117 29 100.0 32 ............................. GTAATATTACAGCTATAACTCCGTACTCTATT 11178 29 100.0 32 ............................. TGCCTTAATGTCTGTGCTTTGGTCTAATACAA 11239 29 100.0 32 ............................. CACTTACATAATGTGGATATTCCCGGAATGCT 11300 29 100.0 32 ............................. CCCTCACTTCGCCGATATGATTCCCCCCGGCA 11361 29 100.0 32 ............................. CCAGGTGGCCAAGGTTATTTAGGAATAGCAAA 11422 29 100.0 32 ............................. CTATTTATATCAAAAGTTGAAAGCCGAAACTT 11483 29 100.0 32 ............................. GCCAACCGAAATTTCAGGCATGCCAAAGCTGA 11544 29 96.6 32 ...................A......... CTATATCTAGTTCCTTATTAAGCTCAGCCGCA 11605 29 100.0 32 ............................. GCTTGGAGAATTGCTCATCTCCAAAAATACCA 11666 29 100.0 32 ............................. TTTTTGCTGGATTACTCGGTAACCGACAATGT 11727 29 96.6 32 ............................C TGAGTATGCCTAACCTGAGGAAAAGTCTGTGC 11788 29 100.0 32 ............................. TTAGGTCATCAAATGGCTGTTGATATGGCTGG 11849 29 96.6 32 ...........................T. CCATGTTGATGCTAGTGCGGCAACAATCAACG 11910 29 100.0 32 ............................. GTACTTAGTGAGTCCGAGCCAAATTTACGAAC 11971 29 100.0 32 ............................. CTGTACGAAATGGTGCAGCGCTATTATGAATC 12032 29 100.0 32 ............................. CTTACAGGGTGTTATAGCGTTGCAGCTATGTA 12093 29 100.0 32 ............................. CACTCGGCGTTGAAACCGCTTTGCTTGAAGAA 12154 29 100.0 32 ............................. GGGCCGGCTGCTTGGCTCTGCACGCTAAATGA 12215 29 100.0 32 ............................. TTTCCGGCTGGCCGGAAAATCCGGATAACGAA 12276 29 100.0 32 ............................. ATGTTGAGGATATCGTCGCCACGTATAAATAC 12337 29 100.0 32 ............................. CTGGGAGATTATATCCGTGGCGGACAAAGTAC 12398 29 96.6 32 ...................A......... TTTTTTCGCCAAAAGGGCTTGAGTCATTTTTA 12459 29 100.0 32 ............................. TAAGGATCTAGTGGTAGATCACCCGGCTGTAA 12520 29 96.6 32 .............A............... TATCATCATGGCAATGATAATACCTGGCAAAA 12581 29 93.1 0 ........T....A............... | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.4 32 GTGTTCCCCACGGGAGTGGGGATGAACCG # Left flank : CAAATCTTCTTCAGTCAAAGCACCATTCCATTTTTGCCCGCTGTCTGTAGTGGGTTGATGGTGCATCGCCTTCGCTCATGTTGTTTTTACAATTTTGACCAGCGCACTGGTTAAACCCTTTTCTAGGGAAGTATCTCCTTGCATTGTTTTGTTGCTGTTTTTGGATATTGATGGCGTTAGCGTATCTTTTGTACTTAAAGTAATCTGATCAAAAATGTAGCATTAACAGGGTTGTGGTTTAATGATAACTATCTGTAAAAGTTGAAATTGATTGCAGTATGAGTAGACAGTTACTTACCGGTAACAAGGAATATGCAGGAACTAAACCGATAACCGGTTGAGTTGAAAAAGTGTTATTCGAAGGGATTGATTTAGGATATTTTTGTTGTGAAATTTGTGTTGTAATTGCTTTGTTCAATTAAGTGTTTTTTGCTCTTTCAAAATCTGGTAGATTTTTGCTGGTTGTTTTTATTCAATAAAAACAATCATATATTTTTAGA # Right flank : GGGATCGTATTGAAAGAATACACCTCGCCTGCTTTGTGCCAGTACTCCGACGCTAACTTTTTTACCATTTAAAAGTTGACGATGAACATGGAGCTTTTGGACCGGTTTAAATGCCATCTTTTAAAATCTCATCAATAGAGTTTGGAAGAGCAGTTTTGTCTGTTTGTTCCTTAATGAGTTGGAAAAGCCGCTGCAAGTCGTCTAATGATTGCCATAGCAATAACAGTTGACGGAATGAAATCTGTCCTGTTCGCTCAAATTTCTTTATTGTTGCCGCCGGCACAGTGCTTTTCTCAGCCAGGGCTTCACGAGAGAGTTTTTCTTGTTCTCTTAAATTTCGCAAATATTTAGCAAATGCTAACTGTATATCGCTTTCGGTAAGAAGTAGTTTCATGATAATTTGTATCGGACATTATTGTGTCCATAACAGCATGAAATTAGCAGATTTGGATACAGTGGTGTCCGTTATGTGCCGGAAACTAAGCCGATATTGAGTTAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8536-7786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYNJ01000174.1 Thalassomonas viridans strain XOM25 contig_174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8535 28 100.0 32 ............................ AATCAGTGTTGCCGGATACTCAGGCATATAAG 8475 28 100.0 32 ............................ TTTAAGGAAAGCGAAACCACTATCAGCAAAAT 8415 28 100.0 32 ............................ AAAACAAGGAAATGAGTGATAAGGAGGCGCGA 8355 28 100.0 32 ............................ GAGCGCAGCGCCCAGGTGCTGAACCTGGGCGT 8295 28 100.0 32 ............................ GTGCAAGCCTCTCAGGCGCTCAATGTCTTGCT 8235 28 100.0 32 ............................ AGTAAACGATCGATTGAAAGAGTCATGTGTTG 8175 28 100.0 32 ............................ ACGTAAAATACCAGCTGCCGATTCTGTACCAT 8115 28 100.0 32 ............................ GCTACCCCGCGCCGGGGGATTTATGGAGAAAC 8055 28 100.0 32 ............................ ACTAAATTGCTATCTGCTTCCAATGCGTCTAA 7995 28 100.0 33 ............................ TGGCAAGCGACAAGTCACTTGCTAGGAAAGCAA 7934 28 100.0 33 ............................ GAGAGGTGAGGTAGCGCCAACTGTATTTGTTTC 7873 28 96.4 32 ...C........................ AGGTGATGTGTGAGAAAGGCGTTACCGAAGAA 7813 28 82.1 0 ...C.....T...........C..T..C | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.3 32 GTTTACTGCCGTATAGGCAGCTTAGAAA # Left flank : ACCAGCTGCTTGGTCAGTCGCCGGGTTTTCGCGAATTTGTGTTCCAAAACTTCAGCCAGCGCCTGGTAGATTTAATGTCGCAACTGGAATTTATCGCCCTGGAAAGTGTTGGCTACCGTTTAAATAAATACTTGTATAACAATGCCAACAGCGACAACCGCATTGTTGCCACCCATCAGGAAATTTCTACCGAAATAGGCTCGGCGCGTGAAGTAATCAGCCGCCATTTGAAAGCACTGGAAAAACAGCAGGCGATAAAACTGCACCGTGGCTCGATTGAGTTAATTAACCCACAGGCATTGCTGAATTAATTCTTACATCGACGGAAAAGTCGGAACCTAGTAGCTAGCTTGATGACAAGCAATGAATAACCCTTTTATTTTTGCTTTTCTCCAGCCCTTGTAAATTAAGGGCTGGATTTTTTCTTTAAAAAAAGGGTAAAAATGGTAAGAATAAGCTTTGTTCTTTAAAAATCATATTGTTAGGGTTTAAATGCTCTA # Right flank : CCCTTATATTGCCTTGTAATGAGCTGTATCCATACTCTCTGTTGTACAAGAATCTATTCACGAGTATTAAAGAAATCACTGCAAATAATAATGCCTACTTGAGACTTGAGACTTGAGACTTGAGACTTGAGACTTGAGACTTGAGGCTTGAGGCTTGAGTATGCTTAGTTTTTAAGATGAGGTTGACTTTAGATGCCGCTCTGTTTATTTTTTGTTAAGGCTCAGTTAATGGCGTGATTGGGTGGTAGACATTGTCGAGTCTTTATGGTGCCGTTTCGTAAAGTAGGTAGTTGGTACTAATTAAACCGGGCGAATAAAGTTTGTGCTGGTCATATGTTGTATTTTACTTGCCCTATCTGTAACGAAGCTGAGTAATAGCCCCTTAAAGGTTAATGTCTTTGTGCTTTTCAATTGAAATAGCGTAAAAGTCATCCGTCATTCAGGTTGTTAGGGATGGAATAACCTTGCTCTAAAGCTCTGCTCAATAGCTTCTCTATGTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //