Array 1 979678-980707 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053468.1 Fusobacterium nucleatum strain Fn12230 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 979678 30 100.0 35 .............................. AAAGAATGGGGAAATATTACAGTTGCTGTATCAGC 979743 30 100.0 35 .............................. TAGTTTTTGAGTAGTCTTTTTCTTTTTCCTGGTCC 979808 30 100.0 36 .............................. TAAAAATCAACAAATACTGCATTATCATCTATTTTA 979874 30 100.0 39 .............................. ATTTATTCAGATTCACTTATGATGAAATAAGTACCCTAA 979943 30 100.0 36 .............................. GATTTTGAGGCTATGGCAAAAGAAAATTTAGAGCTA 980009 30 100.0 36 .............................. AATAGCTTCTTATAAATAATATTCAACACCATTTAT 980075 30 100.0 38 .............................. CTTAATATCCATAATAGATATATATGATTAATTTCTCC 980143 30 100.0 37 .............................. ATTTATTCTCACCAAGTATGGAGAAGATATGCCAATC 980210 30 100.0 37 .............................. GTTTTTTCATTACCTTTTTTCCACTCTTTTTCAGTGA 980277 30 100.0 37 .............................. ACATAAGGAAGATAATTTTTAAATACTGCGAATGTAA 980344 30 100.0 37 .............................. TTATCTGACCATTCAATAAACTATTTTTTTCTAAATA 980411 30 100.0 37 .............................. TAAAAGCAATGGGAACTTATTGGGGGATGAATAATGG 980478 30 100.0 36 .............................. ACCAAACAAATCAAGAATATTCCAATCTTTTTTACT 980544 30 100.0 37 .............................. GAAATAAGACAATTTATTTGGAATGGACTTGTGTCTT 980611 30 96.7 38 .............................G TGAATTTCTTTAAAATTTAATGTATAATTCAAGTATCA 980679 29 90.0 0 .......................-AA.... | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 99.2 37 ATTTATGTATTTCTATATTAGAATTTAAAT # Left flank : AATCTTTTCAAATGTGGTGGTGATAAAATGTATGTAGTTGCAGTGTATGATATTTCATTGGATGAAAAAGGTAGTCATAATTGGAGAAAAATTTTTGGAATTTGTAAAAGATATCTTCATCATATTCAAAATTCTGTCTTTGAAGGAGAATTATCAGAAGTTGATATTCAAAGATTAAAATATGAAGTTTCAAAATATATTAGAGATGATTTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAAATGGATGGAAAAGGAAATGCTAGGTTTACAAGAAGATAAAACTGATAATTTCTTATAAAATTTATTGTCTACCTCTCATAATGTAAAATTACTGGAAGATTGACAAAAGTCAAAAAAGTCTTTATTTATAAATAAATTTAAGAAAATAAAAAAAATTTAAGAAATTAAATTTTTTTATTTTTTACTAAAAAACTTATATTGACAAAAAGATATTAAAAAAGTATTATATGGGAGTAGTTTTTTTAGGTAGCT # Right flank : TACAGAAGAAAGGGATTGAAAAATAAAGACTTAATGCTGTTATATAACAAAAGAATAAATAAAAAATTAAAAGGATTAACTCTAGTTTTTTATATAAGTTAATCCTTTTTAATAAGTTAAATTAAATTTATTCAATTTTTTAAGGGGAGTACATTTTTTATTATGTTAAGTATAGCTTTATAAAGTAAACTAAGAATTAAGTATTCATAAAGTAACAGAAAAATTAAAAAAACGAAATTCAACTAAAATATTAATATAATGAACACAAAAATTTAAGATAGAAAATAAAAATTATCAATTATTAAATTAATAAAATTTTATTAAAAATTAAGCAAATTTCACAATAAAAATATTGCATTTAATCGTAATTGGTGTTAATATATACTTAATAAATTTGAAAGATAAATTTAAAATTTTATCTACTAAAAATAGGGAGTGATTATAATGAGTTTTTTAGGGCAAGTTAGAAAAAAAGCCTTACAAGCAAACAGAAGAATAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATGTATTTCTATATTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1709278-1706443 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053468.1 Fusobacterium nucleatum strain Fn12230 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 1709277 35 100.0 44 ................................... TTTAATTAGTTCAAACATCCAAACCTTCCGAAATATCAGAACCA 1709198 35 100.0 39 ................................... TTGATGGTTCCTTTACACATATTAAGCTAACTTTTATTA 1709124 35 100.0 40 ................................... TCGTCACACCACGAGAGTTGGTTGCACCTGAAGTAGCAGA 1709049 35 100.0 40 ................................... TATGCAAGTACGTCAGTTCCTTGAGAACCGTCGTAGCATA 1708974 35 100.0 40 ................................... TCACTTGGAAAACTTCCTCTTAATAATCTAGACATAAGAA 1708899 35 100.0 39 ................................... ACTTCACACTAGAATTTACTAATCACGAATGGAAATAAA 1708825 35 100.0 40 ................................... TGTTCCAATGAATGGCAACATATGATGTTCACATAAAGAA 1708750 35 100.0 43 ................................... TTATATACAAACTGATATTCATAGAAATTGTGAAAAATACAGA 1708672 35 100.0 41 ................................... TCCAAATCTTATTAAATTTAATATAAACTTTATTTCTCTTA 1708596 35 100.0 40 ................................... TATAACTACAATATCCATCTCTACCAGAAATTTGTTCAAA 1708521 35 100.0 39 ................................... TAATTTCTTATAACCTAAATATCCTAATCCTAATACAAA 1708447 35 100.0 41 ................................... TTTTCTTACATATTATGCATTTGTTGTTGTTGCATAAATTA 1708371 35 100.0 38 ................................... TTCTCCAACTGGTAGCATACCAGCTAATTGATCTAGGA 1708298 35 100.0 41 ................................... TTTTCTTACATATTATGCATTTGTTGTTGTTGCATAAATTA 1708222 35 100.0 38 ................................... TTCTCCAACTGGTAGCATACCAGCTAATTGATCTAGGA 1708149 35 100.0 37 ................................... TAAGATAGAGAAAATGCTATAGATAATTTAGATTTAT 1708077 35 100.0 41 ................................... TGAAAATACAAAAAGTAACACTTCGCTTTTCGGTGGAAAAC 1708001 35 100.0 38 ................................... TCTTGCAATCTCAATGATTGGTTCAATTAAAGTACAAA 1707928 35 100.0 42 ................................... TGATAGCATATGGACAAGTAACGGCAAATGTTCAACCAGAAA 1707851 35 100.0 41 ................................... TTCTCTTATTTGAGTTGATTGGTCATAGTCTTCGTTAAGTG 1707775 35 100.0 42 ................................... CATTTTTGCTTCCTCACTTTTAAAATATAAATCTTCCATTAA 1707698 35 91.4 46 .....A..............A.........A.... CGAATTGAGCTATTATAAGTTTAATATTTTCTGGTATTCTCATTTC 1707617 35 97.1 44 .....A............................. CTATATTAATTTTTGTGTTTGTCTTGTGTATCCTAATTTCTCCA 1707538 35 94.3 46 .....A.............T............... CTAACCTTTTTCTTTCCACTCTTTAAAGATACCTTTTTTATAAAAA 1707457 35 100.0 42 ................................... CCTTTCATATTCTGTTATACCTAGTATATAATCTTCTATATC 1707380 35 100.0 40 ................................... CTGTGCTGTTTTAGTTCCATTATAATTAGTTCTGATTTTT 1707305 35 97.1 40 .....A............................. CCAACCGCACTTTTTACACTTCCACATTTTCATCACTCCA 1707230 35 97.1 36 .....A............................. CGCATTTAAATCACTCCTTTAATTTATTTATTTAAA 1707159 35 94.3 41 .....A..............A.............. CAAATAATCATGTATAACTGCTGCTTTTATATATTTTCCAA 1707083 35 94.3 42 .....A.............T............... CCTTTTTATAATTTTCTTTGTTAATCTGTGTTCAAGTCTAAG 1707006 35 94.3 43 .....A........................T.... CAATATTTCTTTTATTTCACTATAAAATCTTCCTTTACTTCCA 1706928 35 94.3 43 .....A..A.......................... CCCACGGCTATTTAATTTCCAATGTCCTTTTAATTATAATATA 1706850 35 97.1 36 .....A............................. TATTATACATTCTGATTAAATGTTCTCTGTATTCTC 1706779 35 97.1 40 .....A............................. TCTTCACAACCATCTGACCAACATTTTTTAACTTGTTGAC 1706704 35 97.1 39 .....A............................. CTTCTTTATGGATTAATATTTAATGGAAGACATGCTTAT 1706630 35 91.4 42 .....A.............T..G............ TTTTCTCTATTCACTACCATTATTCATCAGCTCCTTCTCTTT 1706553 35 91.4 41 .....AA...............G............ CCAGTTTTTTTAAGTAAGTTTAAAATAGAATTTGTTGTAAC 1706477 35 80.0 0 .....A.............TA.A..T...T.A... | ========== ====== ====== ====== =================================== ============================================== ================== 38 35 97.6 41 ATAAGTGAGAATATAACTCCGATAGGAGACGGAAA # Left flank : CAGATATATACAAACCAGTTTTAATTAGGTGATAATTATGGATAATTGGGATTTTTTAGATAAAGATTTTGAAAAGGAAGTTTTTGAAGATAACTTTACTGTTATTATAATTTATGATATTATATCCAACAAGAGAAGAACACAGTTATCTAAACTTTTGAGTGCATTTGGATTTAGAATTCAAAAATCAGCATTTGAATGTCTTTTAACAAGAGAAAAATATAAATTACTCATTGAAAAGATTGATAGATATGCAAAGCCAAAAGATTTAATAAGAATCTATAGATTAAATCAAAATGTAGTAACTCAAATTTATGGAGAAAAATTAGAAATTGAAAATGAGATGTACTACTTTTTCTAATGAAAAGTAGACGATATGATAAAAATGGGAAGTTCAATATGATTTTTGATAAAACAAAATATAAATTTTTAAAATTTAAAAAGTCACACGATAATAGTTTTATAAACTATTGCAAACAAAAGTTTTTTTGAGTATAGGA # Right flank : CTCCTTCTATTGACAAGAAATCAATATCTTTTTATAATATCAATATAAAGAAATAGAATTCTAAAAAAGATAAAAAAGCCTAAAAATGCTATGATATTTCAATATTTAATCAAGAATTTCTCACAATTGAAATTTTTACAAAAAGAAATAAAAACTATTTAAGGAGGAATTTTATGAAAAAATTACTATTTTTTACATTGTTTATAGGAATTTGTATGAGTGGAGTAGCAAGTACAAAGGAAAAAAATCCAAATCTTTTAAAACAAGTATATAAAAAGGAAGAATTGATAACATTGGACAAAGAAAAAGTAGCAGGAGGAAACGGAACTTTACATGGGAAATTTGCCTTTACTAGAGATATGGCTACTGAAGAAGATGCTATCAAAGAAATAGGTTGGATGACACTAAATAAAGGAGAATCTGTAGGAGTACACCCTCATAAAAATAATGAAGATACTTACATTATTGTTTCTGGAGAAGGAATTTTTACAGATGGTTCT # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGTGAGAATATAACTCCGATAGGAGACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //