Array 1 328-661 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKEW01000054.1 Klebsiella pneumoniae strain EuSCAPE_SK045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 328 29 100.0 32 ............................. ACATTGACTGCCCGTGGCGTCCCCGCGACCTT 389 29 100.0 32 ............................. AGTTTGTCGAACACGGAGCGGAGCATACCCGC 450 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 511 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 572 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 633 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGTG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 205111-204597 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKEW01000005.1 Klebsiella pneumoniae strain EuSCAPE_SK045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 205110 29 100.0 32 ............................. CTTGAGCAAGGCGCTTTTTCTCCTGGGTGACA 205049 29 100.0 32 ............................. CAGCGCCTGGGAGGGATTCCGGATCCAGGTTA 204988 29 100.0 32 ............................. TTCGGAAAGTTCTTTTTCAGCTGATCCGTAAC 204927 29 100.0 32 ............................. ACCTACCAGATCCACACCGGGCGCTGCGAAGA 204866 29 100.0 32 ............................. TCACGCCCAGGGCTTCCTTTGCGTTCCGAAAA 204805 29 96.6 32 ........T.................... CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 204744 29 96.6 32 .....A....................... TGCGTCACGACGCCGGCGACAGTGACATCGTC 204683 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 204625 29 72.4 0 .....T.....ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGACTTTCTGTTAGCTATTAAATCGCTATTCCCGGACATGGAAATCCCGTCCTTTTGGGATGATGATGCAGGTGTGGAGCTGTTCAGTCACCTGTCGTGGTTTATTTCGGCTGCGGTGGTACTGGCTGACTGGACGGGCTCATCGACCCGCTTTTTTCCCCGGGTCTCCCAACGAATGCAGCTTGATGTCTACTGGCGGCAGGCAAACGCGCAGGCAGAGCAGGCAGTGAATGTTTTTCCTCCTGCTGCGGCTGTTGCACCATTTACGGGAATAGAGACATTGTTTCCTTTTATCCAGCATCCTACGCCGCTCCAGAAGGCGGTGCTTGAGCTGGATATCAGCCAGCCTGGACCGCAGCTGTTTATCCTTGAAGATGTTACCGGAGCAGGCAAAACGGAGGCGGCGTTAATCCTGACCCACCGCTTGATGTCTGCCGGAAAGGCGCAGGGGCTGTTTTTCGGTCTGCCGACGATGGCGACGGCCAATGCGATGTTTGACC # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //