Array 1 1415-166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZMP010000037.1 Escherichia coli strain UoL_104 37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1414 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 1353 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 1292 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 1231 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 1170 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 1109 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1048 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 987 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 926 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 865 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 804 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 743 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 682 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 621 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 560 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 499 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 438 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 377 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 316 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 255 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 194 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 128311-127307 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZMP010000006.1 Escherichia coli strain UoL_104 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128310 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 128249 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 128188 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 128127 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 128066 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 128005 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 127944 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 127883 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 127822 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 127761 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 127700 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 127639 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 127579 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 127518 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 127457 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 127396 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 127335 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //