Array 1 57019-58373 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZQY01000001.1 Helicobacter sp. 'house sparrow 1' isolate 106649, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57019 36 100.0 30 .................................... TGTCTATTTAAATATTTAATCTTCCCTGCT 57085 36 100.0 30 .................................... ATACTATCATTTAAAAATATAGAATACCCA 57151 36 100.0 29 .................................... TCTTCTGCATCTACGGATAAATCATTTGA 57216 36 100.0 30 .................................... GTTCTAGGTCTTAGCAAACTTTGTATGCAA 57282 36 100.0 30 .................................... ATAAATAGTAGATTTGTCTTGTTGTTCATT 57348 36 100.0 30 .................................... CAAATTACTAAACAAGTATTTTAAATCGCA 57414 36 100.0 30 .................................... CCCAGTTGTATTGCTTTTGCAAAACAACAA 57480 36 100.0 30 .................................... CAAATATCCATCTACATCAAAATTTATATT 57546 36 100.0 30 .................................... CCCACTTAAAACTAAAGTCTTTAATCCATA 57612 36 100.0 30 .................................... CTACTTTTTCTAATCCCTCTTTAATCTCTT 57678 36 100.0 30 .................................... TAGGGCATTCTTTATTGTTTGAAGTTCTTT 57744 36 100.0 30 .................................... CTAATTCTTCAACATCAAATAAGTGCCAGT 57810 36 100.0 30 .................................... TCATTGTTCCTCCTTGTATTATAAGCCTAA 57876 36 100.0 30 .................................... AAAAAAGTGATGAACCGAAACCCATACGGG 57942 36 100.0 30 .................................... TTTTGGTGTAGTTGCTTCTATTATGTATGA 58008 36 100.0 30 .................................... AAGTCTAGTAGATACACTCTTAAAGAATTA 58074 36 100.0 30 .................................... ATTTCCTCTTGGCTTGGAGTATTAGATTTT 58140 36 100.0 30 .................................... TTGATGAAGTTAGATTTGTTAGAAGCCCTG 58206 36 100.0 30 .................................... TTGCAATGTTATTAAACACAGATTCTATTG 58272 36 97.2 30 ...................................C ATACTCTCCACAACCATAGTATCGTATAAT 58338 36 97.2 0 ...................................C | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 ATTTTACCATAGAAAGATTTATGAAGTGGCTAAAAT # Left flank : GAAAATTATTTAGAATTGCCTATTTTTAGCAAGGATAGCAATGGAAGAGAAATTTATGAGAGTTTTGGTGATGTTTGATATACCTACAAAAACAAAAGAAGAGAGAAAAGCAGGAACTAAATTTCGTCAAAGACTACTTAAGGAAGGCTTTTTTATGTTGCAATTTTCGGTATATCTGAGGATTTGCAAAGGGATTAAAAGTGCAAATACCTATATGCAAAAACTAGAGAGCTTTGTACCAAAAAAAGGTCATATTAGAGCAATTATTATTACAGAAAAGCAATTTGACAATATGAAGATACTTTTGGGAGAAAGAAGTCTCACAGAAAAGGCTCAAGAGCCAATCCAGCTAACACTTTTTTAGTCTCTAGTTTTTTGGGATGCTAAGCAGTTACCCTGCGGAGAACTAGAAAACTCCTTATTTTAGCCACTTCATAAATCCTATTTTGGTAAATCTCATAGTCCCTAAGAACCTTTACATCTTTGTTTTAGCCAAGGGT # Right flank : CAAGCTGATGCTATCTGATGTCTTTATGTTCTATTATGAAAAGGCTTCTGAAGCCATCGTAAGTAATGGTATAAAAAGTTGGGTAATTTATCTTTAAAAGTAAAATTGAAATTTATTTGATGAGCTAATTTTTTAATCTCGTGTTTTTCTAAAAGTTCTCCATAGATATTGTTTTTATAAAAATAGTTTCTATTCATCATATAGGTATTCCACATTTCAGAATAGAGATGTAAAAAAGGTTGGGATCTATCAAACTTATGAGTTTTTATAAAATCTTTTGCCCTTCCCCAAGAGATTTGGCAAGTTTTTCTATAATCCCAATTGTATCTTTCTAAGTTTGATTGTTTGACTTGTTTGGCTAAAAAAGAAGGACCAATAATAGCCCAGGGAACCCGCTTTCTATGATTGATGATATTTTCAGCTTCTAAAATAAGCTGTTTTCCAAAGCTAGAATTTTTGGGAAATTTTACTAAAGAGTTTGTAACTCTTGGCATGGTCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATAGAAAGATTTATGAAGTGGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //