Array 1 2096359-2094577 **** Predicted by CRISPRDetect 2.4 *** >NC_011660.1 Listeria monocytogenes HCC23, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2096358 29 100.0 34 ............................. TTTTTTTGGCTTTTTCTTTAGACACTTTTAACTT 2096295 29 100.0 35 ............................. TTGTTTGGAAAACGTGCGCGCCAGCCTTCTTTTTT 2096231 29 100.0 36 ............................. TGTATTCTTATAATGAGCTTTGCAAAATGGTTCCCC 2096166 29 100.0 37 ............................. TCACCAATTCATGTCCTACTAGCTTCGGACGTTTCAT 2096100 29 100.0 35 ............................. ACGGTTGAATAAAACGAATAATAAACTGCATGTAT 2096036 29 100.0 34 ............................. AAGCTAGTCGCGAACAATTAAGCGCGTTAGCCCC 2095973 29 100.0 36 ............................. CAACGCTTTTTATTGATATGATACTATATGACATTA 2095908 29 100.0 37 ............................. TGCTTCTTGCTGTTCTTTCTCTTTTTTAAGATTTCAT 2095842 29 100.0 36 ............................. GTCTTTTAGCCTGCTTTTGGTTAAAGTGGGGTTGTC 2095777 29 100.0 36 ............................. TACTTAGCACCTACAAGACTAGCATCACCCTGCGCA 2095712 29 100.0 37 ............................. ATCTACAGAACTCTCCGACTCTTGCACTTCCGTGATA 2095646 29 100.0 37 ............................. ATTGGACCGGAAACTGCAGGCGACTTACTTAATTATC 2095580 29 100.0 37 ............................. ACAGTCAAATGATGATGACCAACTTCCTCTGCCAAAG 2095514 29 100.0 38 ............................. TACATTAGTGTATCGAAATCCGTATCGAAAATTTCTAC 2095447 29 100.0 36 ............................. AAAATTGATCATCAGGTAAACTAGCAACATCAAGTT 2095382 29 100.0 36 ............................. GGAAACGCCGTCTTCCGTCGTTCTAAATTTAAAACT 2095317 29 100.0 34 ............................. TATAAATTAAGGATAAGGAGTGTTTTTGGATGGC 2095254 29 100.0 35 ............................. CTTTCTGGAGCAACTTTTAAAGTGAAAGACAGTGA 2095190 29 100.0 36 ............................. TATCTTTATCTGTAGCTAGTTTGAAATCATCTTCAT 2095125 29 100.0 37 ............................. GAAAGTAAAGAAATCAAGCCTAAATTTGTTTTCCGGT 2095059 29 100.0 36 ............................. GGTTTTAACTTCTAGGTTATTTTGTGCATTTTTTGG 2094994 29 100.0 34 ............................. TATTCTTTTAAAGTTGGCGGTAGTATGGTAACTA 2094931 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 2094866 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 2094801 29 100.0 37 ............................. ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCATCA 2094735 29 100.0 35 ............................. TAACAATGAAAAACGGATTTACAAAATTAGCGTCC 2094671 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 2094606 29 93.1 0 .......................C....C | A [2094581] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAATATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTATAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACTCTGCCCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2112390-2111972 **** Predicted by CRISPRDetect 2.4 *** >NC_011660.1 Listeria monocytogenes HCC23, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2112389 29 100.0 34 ............................. TTTCCCCAACTGCGCCCTGTTTTAATTGCTTAAC 2112326 29 100.0 37 ............................. ATATACTGGCAAGTTTATCTTGATGTTTCTGACTATC 2112260 29 100.0 35 ............................. CGTATATTTAATTTTCGGCATATAATCCCATCAAT 2112196 29 100.0 37 ............................. CTGTTCATTTATTTTTCAGTCCTATGTTCATTGCCTC 2112130 29 100.0 36 ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 2112065 29 100.0 37 ............................. AATCGTCACGATGGGAAAGTCGTTGATAGCGCGCCAC 2111999 28 79.3 0 ......A.......TCA.-....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 97.0 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTAGGGGAAGGGAAGCTTGGCGGTATTTGCTTGGGAAAATTTTCCGGATAAGAGGAGATTTTAGATGTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CCCATTCAGATTTAACTCCATCACCATCCATCAAAACCAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCAC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //