Array 1 68340-67592 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEML01000004.1 Halobacterium hubeiense strain JI20-4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 68339 30 100.0 33 .............................. CAGTCCAGCCGCCCCGAGTGCATGGGTCCGCGG 68276 30 100.0 34 .............................. ACTCGGCAAACAACGCCGATTATGACTATGACGT 68212 30 100.0 34 .............................. GACTTTCTCGGGCGGATGGGGCTCGGGACCGGCG 68148 30 100.0 35 .............................. GCGGTCATCGCCGGCCTCCTCCTCGTCACCACCGC 68083 30 100.0 36 .............................. GTTGTCTGCGTGATCGGTGAAGGTGAAGGTGAGTGC 68017 30 96.7 36 .............T................ TTGTGGACGTAGCGCTGGCCGAGCAGGCTGGCGAAG 67951 30 100.0 35 .............................. TTCCAGGTCGTCGACCGGACCACGAGACAGTAGAC 67886 30 100.0 37 .............................. AGCCTGGAGCGCGGCCTGCCGGAGGATGGCGATAGCA 67819 30 100.0 37 .............................. GGGCGATATTGGTCCGTTATTGGTTGATTTTCAGCTG 67752 30 100.0 35 .............................. GGCGGGCTGACGGAGAGTATCCTCGCGACGCTGTT 67687 30 86.7 36 ................T...C.G......G CACGAGCATCCTGCGTGCCCTCGGGGACCTGGCCGT 67621 30 76.7 0 ...A....A.A..G..A...C.G....... | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 96.7 35 GTTTCAGACGTACCCTCGTGGGATTGAAGC # Left flank : GTTTCAGACGTACCCTCGTGGGATTGAAGCGACGTAGAGGCGGCGGAGCGTCGTCTCGTTTTGGTAGGTTTCAGACGTACCCTCGTGGGATTGAAGCGTCGACATTCGATGGTGAACCATCGGTCGGCGCCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCATGGCGAAAATGGCGTTGTAGAGGAGGTCTTCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCGTCACCGACCGGGATTACATCACCAAGAACCCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCCCGGAATTTCGCCGGGGCGGAATAGGGCGGTCCAGTTTCAGACGTACCCTCGTGGGATTGAAGCGTGGGGTCGGACTGGAACGCCCACCATCCGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTGGATGACCGTCCAGTGCGG # Right flank : AGAGATATGGGGAGCCTAGAGAACAGCGGAAGTGATGGGGTTGCTAAAATCAGAGTTGTTTATATGCCATAGTTTCAGAGGAAACAACGGAGGTGGGTGGTCGGTGGGTTTATTGTTCCCTCTGTTCCATGTGGGCCTATATGGCCGACTTCACATTTGAACAAGACACCCAAATCTTCCGGGACCGGGACGCCCTCACGGAAGACTACACCCCAAACACACTCGTCGGCCGCGACGACGAACTGGAAGAATTCCACGCAGCACTCCAACCAGTCATCAACGACGAAAACCCCTCCAACATCTTCCTCTACGGCAAAAGCGGCGTCGGAAAAACAGCCGCCACACGCTATCTACTCACCCAACTCCAAGACGACGTCCAAGAAGTCACCGGCGTTAGCGTCACCGTCGTCGAAGTGAACTGCGACGGTCTCAACACCAGCTATCAGACCGCCATCGAGATCGTCAACCAGCTCCGCCCACATGAAGACCAAATCGCTTCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 76766-68481 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEML01000004.1 Halobacterium hubeiense strain JI20-4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 76765 30 100.0 37 .............................. AGACTGACGAAGTCCAGTGGGGGAGCGAGACCGGCGG 76698 30 100.0 34 .............................. TCCCGCGGGACGCCAGCCCGGTCGGCGACCCCCT 76634 30 100.0 34 .............................. AGCGAGCAGGTCCCTGCGGACAAGGTCCGCTGGT 76570 30 100.0 37 .............................. CGTGTCAATCAAGGTTTGTGGGCCGCCCGCCGGCCCC 76503 30 100.0 36 .............................. CTTGAGTCGGAGGGTGAGGAGTTTGAGACGGTGACG 76437 30 100.0 35 .............................. TCGTGCGGTTGGTCGCCGCCCGAACTCGTCGTCTC 76372 30 100.0 36 .............................. TTGGCCCGTGCGTGTACGGGGTCGGGGAGTTTCACG 76306 30 100.0 37 .............................. GGCACGAGTGATATTGATGCGATTGCTGACGACCTTG 76239 30 100.0 37 .............................. GTACAGGAACGACTCGGTGAGGATTTCAATACCGCGC 76172 30 100.0 36 .............................. ATCGACATCGGCTCGAAGGATACGTCGCCGCCGCGG 76106 30 100.0 36 .............................. CATCGGTCGGGTTGTCTGCGCCACGCCCCGGCCCGA 76040 30 100.0 34 .............................. TTCTTTCGCCACTTCGAGGAGGTAGTTCGCGATA 75976 30 100.0 35 .............................. CCACACTCACACACCCACGGGCCACTACTGCCGTA 75911 30 100.0 37 .............................. GGCGAATGGTCCTGTATCAATCCCCACACCATGATAC 75844 30 100.0 39 .............................. TCCTCAAGAGCGATACGGTCGCCAGCGAACCGGTATGGC 75775 30 100.0 35 .............................. CACAAGCGCCGCCGTGACACTCAGAACGAGCACGT 75710 30 100.0 34 .............................. CTCGCTGATGCGGTGGAAGGAACTCTGGCCGGCG 75646 30 100.0 37 .............................. GAGCCGGGGAACTCCGAGACCCTCGCGGAGTTGATGG 75579 30 100.0 36 .............................. AGGACGTACTGACGACGAACCTGCGCACCGTCGAGG 75513 30 100.0 35 .............................. GTCGTGGTTGCGGACCTCATCGGCGCTGATGTCGA 75448 30 100.0 35 .............................. GACTGGTCCGTGAATCAGAACGGCGTCCGCTCCCG 75383 30 100.0 34 .............................. CCGGACAGAGAGCACTCCCCACCGAGGCTCAACA 75319 30 100.0 36 .............................. GGTCCTCGTCGAAGAACACCGCGAACACGGTCACGT 75253 30 100.0 36 .............................. ATCTCGCGGCGGAGATAGCCGACCGACGCGAAGATG 75187 30 100.0 35 .............................. GTCGAGGTCCGTCTCGGTCGCCGCGACGACGGCGC 75122 30 100.0 35 .............................. ATGGTGTGAGGAGAACGGCGGCTATCATCCGATGG 75057 30 100.0 33 .............................. CAGTACCGCGGCAGCGTTGAGATGAATGGCGGG 74994 30 100.0 34 .............................. GCGGCCGCCGCACCGAACTCAAGCACGGCGCCCG 74930 30 100.0 36 .............................. AACATTCGGCTGCCGAACGCTCGCGAGCTCGCCCGC 74864 30 100.0 35 .............................. GGCTGGTGGCAGCGCAGCGGCGAAATCGACCAGAA 74799 30 100.0 36 .............................. GATCTGCCACATCGACGAGGCCTGGGTCGACTGGGA 74733 30 100.0 36 .............................. ACGAGACCATCGAGGTCCAGTCGACTCCAGATACCG 74667 30 100.0 37 .............................. TCAATCACGAGCTCGTCGTCGAGACCGACGCCCTCCG 74600 30 100.0 35 .............................. GAACTACTTGGCGCGAGTGAGGTGGACCGATGAGT 74535 30 100.0 37 .............................. TCTGCCTGCTCCCGCCAGTCAGTATATTCATGCGGCT 74468 30 100.0 33 .............................. CGCTAGGTTCTGCTCGTACCTAGTCCCCGGCAT 74405 30 100.0 36 .............................. GGCGGCCGCCGAACTGGTAGTCGGGCGCGCTCGGTT 74339 30 100.0 35 .............................. CGCGTCCACGGACAGCTCTTGGTCGTCGTCGTAAT 74274 30 100.0 34 .............................. GAGTGCGTCGCGGATGGCGTCCACGTGACTGCGG 74210 30 100.0 34 .............................. CACTCAAGCAGGCGGCCGACGCCACCATGCTTCG 74146 30 100.0 36 .............................. CGTCCGCCGGACGGCTGGCGCATCAAAGACGTCTGC 74080 30 100.0 35 .............................. GCGTTGCCCGACCTGCCTCGGTCCGACCGACGAGC 74015 30 100.0 36 .............................. TTCGGGCCGGCGTACGTGAACGCGCCGGAACCGCCG 73949 30 100.0 35 .............................. CGACCATCCTCAACGGGGTTGTCCGACTCGCCGGA 73884 30 100.0 36 .............................. TTATGGTGAACATGGTTGCCCGCCACCGCGTCAACA 73818 30 100.0 36 .............................. TGCGGGAACTCTAGCGCGTCGTTCAGGCTAGTTACG 73752 30 100.0 37 .............................. AATAACAACAGGCAAACGAAGATCCGAGAATATAACA 73685 30 100.0 35 .............................. TTCAAGAGAATAACGTTACGTATGCCGCATATACG 73620 30 100.0 34 .............................. TGGATAGCCGCAGTCACGCCATTAGTGGTTGCTC 73556 30 100.0 34 .............................. CGCGTAGACGTATCCGAAGACGTGGTTGCGGAGT 73492 30 100.0 33 .............................. AGGGCGTCGGCGAACTCACCGCCGTTGAACTGG 73429 30 100.0 36 .............................. GTTGAGGGTTTGGCAGTGCTGGCAGTGCTGGTAGTC 73363 30 100.0 38 .............................. TCGACGAGCTCGTGCTGGGTGGTCATCGTGAGTCGCTC 73295 30 100.0 35 .............................. GCCCTGGTAGCAGCGGTCAGCTACCCAGCCCGGCC 73230 30 100.0 35 .............................. AGGTTGTGGTTGAGGGGGAACTGCCTGAGGAGTCG 73165 30 100.0 35 .............................. AACGTCGCCTTACAGTCACGGCAAACTACGGTGCC 73100 30 100.0 36 .............................. ACGCTAAACTGCGAGCAGTGTGGCGGCCAAGTCCCC 73034 30 100.0 35 .............................. GAGGGTTGCGGTGTGGCCGTCGCAGTCGGTGACGC 72969 30 100.0 35 .............................. TCGCGGTCCCCCGACGCGACCCCCGACAGGAACGA 72904 30 100.0 38 .............................. AGCTGTGACATCGTCATCGATCGCGCGGGCGGGACCGA 72836 30 100.0 33 .............................. CCAGTCGCCTTCGCCGGAGCCGGTGACGACGGT 72773 30 100.0 37 .............................. TCCCGCAAGAGTCCGACGTCGCGAGCGGCATGACCGA 72706 30 100.0 37 .............................. CTGTTCCTCGCACTCGCGTCGCTGCTCGCGATGATGG 72639 30 100.0 36 .............................. CGCGAACATCGTCTCCGGGCAGGCCGACGAACCGGT 72573 30 100.0 36 .............................. GATAGCTCGCCGTCGACGAACGTCAGGTCATCCTGT 72507 30 100.0 34 .............................. GACCTGCGCAGCGCCGCCCGTATCTCCTGACGAG 72443 30 100.0 34 .............................. GCTGTCCGGAGTGCGGTACGGAGAACGGCTACGT 72379 30 100.0 37 .............................. GCGGTACCGACCCATCGTGAGGTACGGCGCGAGCGCG 72312 30 100.0 35 .............................. CAGTATGGCGAAGAAGACGACGCGCGACCAGCTCT 72247 30 100.0 34 .............................. TCGCGTACGTCTACTCACACGCCGGCATCCGCGA 72183 30 100.0 35 .............................. CTCGCGGTCCAGAAGGCTCAGGGTGACGTCCCCGA 72118 30 100.0 34 .............................. AGAAAGAGAGACGAGGGAGAGAGACGGTCTACGT 72054 30 100.0 35 .............................. GGTCGGCGTCGTCGACGACGTCGAGAGCGGGACCG 71989 30 100.0 36 .............................. GGGGTGAGGTCGCGGAGGTCGACGCGCTCAGTCACC 71923 30 100.0 39 .............................. GCGTGCAAGAACTTGAATGGGTGTTAGACGAATGACCGA 71854 30 100.0 36 .............................. CTGGGCGGCTACATCATTACGGACGGAGACATCGTC 71788 30 100.0 37 .............................. GGCGAGGGGCAGTGGACGATTAAGCCCGGGCTTCTCG 71721 30 100.0 35 .............................. GTCGTGAGTTCGTCCGTGGCGAGCGTCGTGCCGTT 71656 30 100.0 36 .............................. CTTGTACGCCTGGACGAGGGCGAGGTAGTCGCCGAG 71590 30 100.0 36 .............................. TGGCAGAGAGAGAAGAACTTACTAGCCGCTTCCTCG 71524 30 100.0 36 .............................. GACGTTCCCGGCGAGCCGGCGGCGGTCCCCGGCCGC 71458 30 100.0 36 .............................. GGAGACACGTCATACTCGTCGTTCGGGAGGAACGCC 71392 30 100.0 37 .............................. GGCTTGTTCGAGTCAGCACGGAGACGGCGCTTACTGG 71325 30 100.0 37 .............................. AACACGGACGCCGCGGGTAGTGGTTCGACGGGCTACC 71258 30 100.0 35 .............................. GGTACGCGTGTTCGTGCGCGGAGGCGGGGAGTGGG 71193 30 100.0 35 .............................. CCGCAGTGGGATGAGGACGTCGACGGCGTCACGCT 71128 30 100.0 36 .............................. AGACCGACGAAGTCCAGTGGGGCTCGGAGACCGGCG 71062 30 100.0 37 .............................. GCCGCAATCGTCGTATTTGACGCCGCCGAAGCCGGGT 70995 30 100.0 34 .............................. TGCCGTCACGCGCCCCGAGAGTGGCATTCTTAGA 70931 30 100.0 36 .............................. GTACCCCTTTGATGGGATTGTCGTGGAAGCCCCGGA 70865 30 100.0 34 .............................. TAGTCGTGCGTCGCCACCGTCGTTTACGTATAAG 70801 30 100.0 34 .............................. AAAGCCAGCGTGCTTCGGCGATGCAGGCCGCCGG 70737 30 100.0 37 .............................. AAGGGAGTCGTGGGGCAACGATTGACCCGGGAATGCG 70670 30 100.0 36 .............................. CCGAACGGCAGGGGGCCGGTGTGTCGCTCGTGTGAA 70604 30 100.0 35 .............................. CCCGCACGCAGGGCAGTCGTGGATGATTGAGTGCG 70539 30 100.0 37 .............................. CGCGACCCGCGCCCAGAGCTCGTCGTCGCTGGGGTCG 70472 30 100.0 36 .............................. TATCCAGTCGATGTGTTCGATGAATCGCGGGTCTAC 70406 30 100.0 37 .............................. GCGGAACTCACGGGTGAATCCCTATGAGTGGCGTTGA 70339 30 100.0 36 .............................. AGACCATCGGTTATGCAGCTCATGCTACAGATATGT 70273 30 100.0 35 .............................. CACCGGAAAGGGCGGATTCGTTGATGATGAGTGAT 70208 30 100.0 35 .............................. GGCGCAAGCCGTAAGGACGACGGTGAGACGAGTTT 70143 30 100.0 36 .............................. GGATCGCAGCCAGCCGCTGCACACGAATGGCATAGC 70077 30 100.0 34 .............................. ATGCGAGAGCACGCCGTCTCGGCCGTACCAGCGG 70013 30 100.0 35 .............................. CCGGGACGGTTGGCGTGATGAGCATCACGATTTTC 69948 30 100.0 33 .............................. CGCCGGAGGTCGTCGCGGTTCGCGTGAATGCGT 69885 30 100.0 35 .............................. AGGGAGAGGAGTCGCGGGCCGGCGTACGTGCGAGC 69820 30 100.0 36 .............................. TCGATTTCGACGGTCATCGTGCTGGAGAACTCTGCT 69754 30 100.0 35 .............................. GCTTAAGTTTACCGCATACGACCAACTAAAACCAA 69689 30 100.0 35 .............................. GGGAACATCACCGAAGTACGTCTTGTAGGGTTCGA 69624 30 100.0 40 .............................. GGGCACGCCCCCATCGACCTTCGGTCGTGCCGTGCCCGTC 69554 30 100.0 35 .............................. GACATGCCATTCGACCGGGTCTAACACGACGCTGT 69489 30 100.0 35 .............................. AGCGAATGGTACGACGGTGACGCGAAGCCGCTTCG 69424 30 100.0 36 .............................. GAATCGACGGGCGCTTCGGCGGTGGCGTTTCCGGGG 69358 30 100.0 32 .............................. ACAACCAAGAGCCAGAAGCCGACGAAGAGCAG 69296 30 100.0 35 .............................. CCCATGTCCAACGTGCGGAGCTACGAGTCGCTGGA 69231 30 100.0 37 .............................. TTGGAGGGTGTGCCACGCTGGAAGGTTACGGTCTGGG 69164 30 100.0 34 .............................. TCCCGTTGTCCGTGTCAACCTCCCGAGTAATCTC 69100 30 100.0 36 .............................. GAGAACGAAAACCGGGCGGTGATGACTGGCGTCGAC 69034 30 100.0 35 .............................. GTCGAAGAGGTCTTGCTGGTCGACCTCCGACTGGT 68969 30 100.0 35 .............................. TCGATTTGTGACCCGGCCTGTGGGAGCGGCCAGTT 68904 30 100.0 35 .............................. GCGTCGGCCAGCTCGCCGAGCGCGTCGATAGTCGT 68839 30 100.0 37 .............................. GACGTAGAGGCGGCGGAGCGTCGTCTCGTTTTGGTAG 68772 30 100.0 36 .............................. GTCGACATTCGATGGTGAACCATCGGTCGGCGCCGG 68706 30 100.0 35 .............................. GCATGGCGAAAATGGCGTTGTAGAGGAGGTCTTCG 68641 30 100.0 35 .............................. GCGTCACCGACCGGGATTACATCACCAAGAACCCG 68576 30 100.0 36 .............................. GCCCGGAATTTCGCCGGGGCGGAATAGGGCGGTCCA 68510 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 127 30 100.0 36 GTTTCAGACGTACCCTCGTGGGATTGAAGC # Left flank : ACACTCGAGCGAACAGTCGAGCACCCGACGCTGAACCGGAAGGTGAGCTATCAGTATCTGCTTCGCTTGGAGGTATACAAGCTCAAAAAGCACTTGTTAACCGGCGAATCCTATGATTCGTTCAAGCGGTGGTGGTAGATGTACGTCATCGTCGTCTACGACATGGAGGCTGACAGGACCCACCTGATGCTGAAGCTCTGTCGCCGATACCTTGTTCACGTCCAGAACTCAGTACTGGAAGGGGAAATCTCGGAGGGAGATCTAGCGACACTGAAGGGGGAAATTGAAGATCTCCTTCAGAAGGGAGAATCAGTCATGGTCTACGAACTCTCTTCGGACCGGCTATTGAACCGTACCGTGTACGGGGACGACCCGACCGAGGATAGTCGGTTCCTCTAGCTGATGTCGACCCCCCGGGGGTTTTGGGGGGATTGCGGGTCGACGGAAATGATGAAGTGTATACCACTGGTAGAGGTGATATGGTGGGCAAAATCACCATG # Right flank : GTGGGGTCGGACTGGAACGCCCACCATCCGGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTGGATGACCGTCCAGTGCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCCAGTCCAGCCGCCCCGAGTGCATGGGTCCGCGGGTTTCAGACGTACCCTCGTGGGATTGAAGCACTCGGCAAACAACGCCGATTATGACTATGACGTGTTTCAGACGTACCCTCGTGGGATTGAAGCGACTTTCTCGGGCGGATGGGGCTCGGGACCGGCGGTTTCAGACGTACCCTCGTGGGATTGAAGCGCGGTCATCGCCGGCCTCCTCCTCGTCACCACCGCGTTTCAGACGTACCCTCGTGGGATTGAAGCGTTGTCTGCGTGATCGGTGAAGGTGAAGGTGAGTGCGTTTCAGACGTACTCTCGTGGGATTGAAGCTTGTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGTACCCTCGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 87533-87827 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEML01000004.1 Halobacterium hubeiense strain JI20-4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 87533 29 100.0 36 ............................. CCGCGACTACTACAAGGAGGAAGTCCTGAAATTCGC 87598 29 100.0 39 ............................. CGTCGGATTGGTCTCGACCTCGACCGCGAACGGCGGCTC 87666 29 100.0 38 ............................. CCAGATTGGCGACCCCGTGATGGACGCCGCGCAAGGCC 87733 29 100.0 37 ............................. CCCCCGCCAGCGCCATCGCCGCTCCCGTCTCCGGGTA 87799 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 100.0 38 GTTACATCAGAACGCTAGTGCGGTTGAAG # Left flank : TAGAGTGAAAAAGGAGAGTCTAGGAACCTCCTCGGAGCCACGATCTGCTGCTCAGATACCATCCGGAAATTCCCCTGTTGGTCGTCTTCTCTGACCGGTATCGGATCTCTATTTCCGCTCCCCTAACAGTAGTTGAACGGACAGAATTTTATTCAGGAATTGCCCCGTAATTAGGAGTGTGAAGGGCATGTGACGCCGTCCACGCTGAATAAATCAATCGTATTTGCAACAACTGATAATCAAACCCTCCTAACGGAGATTAGATTAGCCGCGGCATCAACACGAGCGCGAATGAACTCTCCGGCGAGGAGCACGAGTGATCAGCCTTGGAACTCCCATCGTACCGGCGTCCATACTGCTCGGGAGATCGTATACCCAACAACGACGATACGCGACGATTCTTCATCGACCCCTAGGGGGTTCAGGGTGAATTACGGGTTGACGAAAACACCGAAGTATGTATGGCCTGTAGCACCGCTGAGTGCCCCGTATGGGGCATG # Right flank : GTGCACAGTGTGTCGATGGGCGACGCTGGCTGGAGTGTGGACGCGCTACCTACTGCTATCGGATGTTGGAGTTGTCGCCAACCACGATTTGGGAGAGACAACGTGCTGAGGTGTCTGCGACGACGCACTCAACAGGTCGTTTCGTGTGGTTGGCGATGGTCAAGATACTGCTTTGAGGTTACCTAAGGATTTTGATTCGGCAGACCTCTCGTCGGTATTGAATGTGCTCTTGTGCTTCTGCTATCGTGGCCGGTCTTCTAGTTCATCGCTGTCGACACCGGTTTTATAGTAGTCGTCTTCGATTCGGGAATCGCCTCAGAGTCAAGCTCTGAGGCGCTCGGCCTGCGACGCTGATGACTAGACCTTTTCTCAAATTTTAGAATGACGATGTGACGATACGCCAAAACAAATAACGCACACACAATCCAGGGTTGATTCGTCCTATGACAGACCCTAGTGAAGAACACGACAGTCAATCCAACACCGGCTACATCGAACGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATCAGAACGCTAGTGCGGTTGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 114783-113973 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEML01000004.1 Halobacterium hubeiense strain JI20-4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 114782 30 100.0 35 .............................. TAAGTCGGGCGACACGGCGTCGACGCCTTCGGTAA 114717 30 100.0 37 .............................. ATCGACTGGTACGAGAACAACGCGTATCCCGACCGTG 114650 30 100.0 32 .............................. AGGGCGTCGGCGAACTCACCGCCGTTGAACTG 114588 30 100.0 36 .............................. GATGCATCGCCAGCAGACATTATCTCCGTCGGAGAC 114522 30 100.0 34 .............................. CCGCGCTCGGCCTGAATGCCGGAGATGCCGCGGG 114458 30 100.0 34 .............................. TACGACGACCTCGCAGTCTCCGACACCTATACCG 114394 30 100.0 34 .............................. CGTCTCGCCGTCGGTCAACAGTCCCGAGTGGCTG 114330 30 100.0 37 .............................. TCGAAGACGCATCCGGCGAGCGCGACCGCGACATGGA 114263 30 100.0 37 .............................. CGACGTCGCGCCGGCATCATGCCTCCGGCAGGTGCCA 114196 30 100.0 34 .............................. ACGAACAGCCCGGACACCGACGAACTCGCAGGCT 114132 30 100.0 35 .............................. CATCAGTCGCCGCCGTTGTCTGCGTCCTGCTCGAC 114067 30 100.0 35 .............................. CTCTCTTTGCCAGAAGCCACGCCGAAACTAATACA 114002 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 100.0 35 GTTACAGTAGAACGCTAGTGCGGTTGAAGC # Left flank : CTACCACGGCCTCGACGCGAAGTTCGAGCGACAGCAGCCGAAGTCGATCCGAACCCGTTCGCCAGTTTGCGCTCGCCGACGCCGACGGCGTCTATCAGGGCTGCGGTGAGAAGGCGCCGTTCGAGACTCCAGCCGGTCGCCCATATCTGGAAGTCCATCACCTCTACCGGCTGAGTGATGGCGGTTTCGACGACCCTGAGAACGTCATCGCGCTATGTCCGAACTGCCACCGCCGCCGTCACGAGGCAAGAACGACGACGAGTTCAACCAGGAACTTATCGAGAAGGGCGAAGAGCGGAACCGCCGAATTCTGTCCGAGTGATTAGCCGTGGAACCCCATCGTACCGCCGCCTACACAGACTAGGGAAATCGGATTTCCAGCAACGCCGGTACTCGCCGTTCTTCATCGACCCCTAGGGGTTCAGGGAGTATTGCGGGTCGACGAAAACACCGAAGTGTGTATGGCTTGTAGCACCGCTGAATGCCCCTAATCGGGCATG # Right flank : CGCAGTAAACCCGACCCCGAACACCCATGGCGGTACGTCTGCAAGGAGTGCCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCACCCGCACGCCAGCAGGCTGTTACAGTAGAACGCTAGTGCGGTTGAAGCCCCGAGAGTTCCAGCGGCAGCACGAGCGAGCGCGTCGTTACAGTAGAACGCTAGTGGGTTGAAGGGAATGGGTGAACTACACAATCGCCACCGAGCACACGTTACAGCAGAACGCTAGTACGGTTGAAGGTCCAAGATCTCCGGTGGGTTCCGGTCAACGAGACGGTTACAGCAGAACGCTAGTGCGATTGAAGGATTTCCCAGCGGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGTAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 5 121391-120119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEML01000004.1 Halobacterium hubeiense strain JI20-4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 121390 30 100.0 36 .............................. GGGGAGTTGCGGGCGGCGACCGCGGCCGTCGGCGGT 121324 30 100.0 33 .............................. ACCGAGGCGCACCACGGGACGGCGCGCATCCTG 121261 30 100.0 32 .............................. GGCGGTGAGGTACTGCACGTACGTCCAGCCGC 121199 30 100.0 36 .............................. CAGATCAAGGAGATGCACGCCGGTGTGCTCGTCACC 121133 30 100.0 35 .............................. AGAACCTCCAGCGCGAGGATGATACCCCCGCCAGC 121068 30 100.0 38 .............................. CCCGGCGCCGCCAACCCCAGCGTCGGCAGCGTCACGGC 121000 30 93.3 36 .......T.....................T GGTGAGTGGGCATGGCTGGTGGACTTCACGCGGCGG 120934 30 96.7 35 .............................T GATTGGCTCGTCCAGGGTCGGCCGCTCGGAGGTGC 120869 30 100.0 37 .............................. ACGCAAGCACTCTCGCTGGTGTCTGTCATGGTGTCGC 120802 30 100.0 37 .............................. GTCGCCACGGCGCCGTCGCCGTCCGGGTCGGTGAAGC 120735 30 100.0 35 .............................. AACGAGGACCTCGTCGACTGGAGCGTCGAGAAGGA 120670 30 93.3 35 .......T.....................G GAAACGGGCGTAACGGAGCAGAACCTCGACAGCAG 120605 30 100.0 36 .............................. TCGACGACAACGACTAATACCGAGTCTAAAACACTG 120539 30 96.7 33 .......T...................... GGCACCTGGCTCGCCATGGAGTGGACGGGCCGC 120476 30 93.3 35 .......T..................G... CTGAACACCAAGCAGGACCCCGTCGGTGACGTCCT 120411 30 96.7 37 .......T...................... TCCCGCCGCAGGCGTTTACGAGCGCTATCACCTCCGA 120344 30 96.7 35 .......T...................... TGCCCGTACGGCGTGAGCTCTGCTGTCCCAGATGC 120279 30 93.3 35 .......T....T................. AGCACCCACTCCGGCGTCTCCCCGCCGTCGACGGT 120214 30 93.3 36 .......T.................A.... GGGGCGTATCTATCGTGACTGACCCATAGCCCGCAC 120148 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 97.7 35 GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Left flank : TGTTACAGCAGAACGCTAGTGCGGTTGAAGCCCGGCGTAGTAGTCCGGGTGGCACGCATCAGACGAGTTACAGCAGAACGCTAGTGCGGTTGAAGCGAGAACTATACATCGACAGGGGGATGTCCTCGGCGGTTACAGCAGAACGCTAGTGCGGTTGAAGCACGACGCAACCGTCGNNNNNNNNNNATTACGCGCCCGAGACCACCGAGTTACAGCAGAACGCTAGTGCGGTTGAAGCCTGCGGGCGTCCGAGACTGCTTGATGGGAGGTCCCGCGGACCTCGGCCCACTCGTTACAGCAGAACGCTAGTGCGGTTAAAGCGTCGTCCCCGCGAGCATCGAGGCGGCGACCCCGTCGGGTTACAGCAGAACGCTAGTGCGGTTGAAGCTGGTCCGGGATTCTCCCTGGTCGTGGTAACGGAGGGNNNNNNNNNNGTTACAGCAGAACGCTAGTGCGGTTGAAGCCCGCGGTCGCAGAGACTGGTGATGGCGTCCGCGACA # Right flank : GACGCGTCCCGTTGGAACGTCGCCGCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCGTTCGAGGCTATCAGGCCGATGGTCGGATGGGAGTGTCCGACTAACCCATGGGAAGCCGAGGGGCTTGACCCCGAGGCGGTTCACTGTCTGGGGATGGCGTCGACGCTCGACATCGACCTTGAGCAGGCTGTCGAGAAGAAGCTAGCTGCCAACGAGCAGCGATTCGACGAGGAGGCCGCCGAAGAGATCACCGAGCAGTTGCAGTCGTATCAGCGCTGACTACGCCGTCTCGAGGTCGAGGTCGGACTCGATGTCGTCGAGTGTCTCGATGAGTTCGCGGTTGTACTCGTTGCCGTCCTCGCCGTTGTGGACGCGGCGGTGGCAGGTGGGGCAGAGCGCGATGACCGCATCAGGCTTGTCGGGTCCCTCGTCGCTG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 6 122416-121503 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEML01000004.1 Halobacterium hubeiense strain JI20-4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================== ================== 122415 30 100.0 34 .............................. CCCACGCTGCGTAATCTCAACGCCCTCCACGTCC 122351 30 100.0 36 .............................. TCCAACCCCTTATGATGATGGCAGTAATCGTGCTCG 122285 30 100.0 35 .............................. CTCACGAGCGAGCTCGGGTTCGAGGACATGCCCGA 122220 30 100.0 37 .............................. GCTTACTTGCGGGTTCATACTGCATTACACCCTTCGG 122153 30 100.0 37 .............................. ATCCGGATGCAGCTCGCCATCGAGGAAGCGCTGTTCG 122086 30 100.0 36 .............................. ACAGTCCGCCGCCCGAACCGCCGCTTGCCGAGCCCG 122020 30 100.0 35 .............................. ACCCGGAGAACAAATCAGCCAATCACTCCAAGTAG 121955 30 100.0 36 .............................. CTTGAATGTCGAAACTGATAGTGTAGCGTTGTAGGT 121889 30 100.0 35 .............................. CCGGCGTAGTAGTCCGGGTGGCACGCATCAGACGA 121824 30 100.0 35 .............................. GAGAACTATACATCGACAGGGGGATGTCCTCGGCG 121759 30 100.0 47 .............................. ACGACGCAACCGTCGNNNNNNNNNNATTACGCGCCCGAGACCACCGA 121682 30 100.0 53 .............................. CTGCGGGCGTCCGAGACTGCTTGATGGGAGGTCCCGCGGACCTCGGCCCACTC 121599 30 96.7 37 .........................A.... GTCGTCCCCGCGAGCATCGAGGCGGCGACCCCGTCGG 121532 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================================== ================== 14 30 99.8 38 GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Left flank : TGCGGTACTCGCCGGACTACGCGAGTTCTGCGACAGCATGAGACGCTATGTGTCTTCGTATTCTTCGAGTGTGACTTGGGAGGCGTCGAGGCCGGCTTTCCGGGGGTCTTGCGAGGAGAACTTCCTCGCTAGCGAAATCCGGGCTTCGTAGCTGAGGACTGCAATTGTGGGGATGGAGAACGCGAGAAGTGGGGTGATCTGTGTTTGGAGAATTAACTCGCCAGCAGCGTATGCGAAGAATGAGTCTGCGACAGACAGCCGCCTGTCAGGCGCGGCACCGACACGAGCGCAAACGAACTCTCCGCAAGACGTACGAGTGATTAGCCACGGAACAGCCTCGTCCCGCTGGCCACACTGACTCGGGAGATCGTATTCCCAGCGACGCGGAGACACGACGATTCTTCATCGACCCCCGGGGGGTTCAGGGACTATTGCGGGTCGACGGAAACACCGAAGTATATCTGGGCTGTAGCACCGCTGAATGCCCCTAATCGGGCATG # Right flank : TGGTCCGGGATTCTCCCTGGTCGTGGTAACGGAGGGNNNNNNNNNNGTTACAGCAGAACGCTAGTGCGGTTGAAGCCCGCGGTCGCAGAGACTGGTGATGGCGTCCGCGACAGTTACAGCAGAACGCTAGTGCGGTTGAAGCGGGGAGTTGCGGGCGGCGACCGCGGCCGTCGGCGGTGTTACAGCAGAACGCTAGTGCGGTTGAAGCACCGAGGCGCACCACGGGACGGCGCGCATCCTGGTTACAGCAGAACGCTAGTGCGGTTGAAGCGGCGGTGAGGTACTGCACGTACGTCCAGCCGCGTTACAGCAGAACGCTAGTGCGGTTGAAGCCAGATCAAGGAGATGCACGCCGGTGTGCTCGTCACCGTTACAGCAGAACGCTAGTGCGGTTGAAGCAGAACCTCCAGCGCGAGGATGATACCCCCGCCAGCGTTACAGCAGAACGCTAGTGCGGTTGAAGCCCCGGCGCCGCCAACCCCAGCGTCGGCAGCGTCACG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGCAGAACGCTAGTGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //