Array 1 57210-56158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSHQ01000044.1 Escherichia coli strain upec-45 upec-45_ctg_1078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 57209 28 100.0 32 ............................ TAACGCTGGCGGCACTGCGGGAGTAGTCCTGG 57149 28 100.0 33 ............................ CAAATGCGATCGCCGACGCCGCCGAATGGGCAA 57088 28 100.0 32 ............................ ACCCTGATTTTACGGCTAAACGGATTGCGCCC 57028 28 100.0 33 ............................ CGCGAGTTATGGTGGGCTGTGTGAGGGCTTCTT 56967 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 56906 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 56846 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 56786 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 56726 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 56666 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 56606 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 56546 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 56486 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 56425 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 56365 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 56305 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 56245 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 56185 27 92.9 0 .......................C-... | T [56166] ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGCTCCTTCAGCCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTATTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 66904-66394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSHQ01000044.1 Escherichia coli strain upec-45 upec-45_ctg_1078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 66903 28 100.0 32 ............................ AAATTGAGGAATCAAAATGGCGCACAATATCT 66843 28 100.0 32 ............................ AGGGTTAGCCAGTGCGCGAATCACGTTGAAAA 66783 28 100.0 32 ............................ GATCTCATTGTTGGTCTGTGGGGTGGTCTGGA 66723 28 100.0 32 ............................ GAAACCAGAGCGCCCGCATAAAACAGGCACAA 66663 28 100.0 32 ............................ TCAGCCGGAGGCTCTCAATTTCAGCCGCGCGG 66603 28 100.0 32 ............................ AGCACGGCTGCGGGGAATGGCTCAATCTCTGC 66543 28 100.0 32 ............................ TGATGGCGCAGCAGTCCTCCCTCCTGCCGCCA 66483 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 66423 28 85.7 0 ....................T...C.CT | C,A [66397,66400] ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //