Array 1 595318-593345 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015104.1 Thermococcus sp. P6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================ ================== 595317 30 100.0 38 .............................. TATGATAGGGTCCATTATCTTCAGCCAACTAACGCAAC 595249 30 100.0 37 .............................. GGATGATTGGGGGCTGAAGTTTTCGGAGAAGAATATG 595182 30 100.0 37 .............................. CTGTTCGCCGTAGTCATTCCCCTGCTGGCCATGGTGG 595115 30 100.0 38 .............................. AAAATATACATCGAGAAGGGCGGCCTGTCCGGGTATAA 595047 30 100.0 36 .............................. TGTGGGGGGCGTGGCCCTGCTCACGTTCTATCTCAG 594981 30 100.0 37 .............................. TTGGCTTGTTCTCCTCCGCTTTCTGCACTGAAACGTG 594914 30 100.0 39 .............................. GAAGCCCGTGCGGGGGTGAGTAGTCCTGGACGAAAGCCC 594845 30 100.0 37 .............................. CTCGTACCCTTTCGGTTGGGGAAACGGAGGATTAACA 594778 30 100.0 36 .............................. TCCGGGGGAGAGGGTACACGGGGGATTAATGCCCCC 594712 30 100.0 37 .............................. CTTCCTCTTCACAACCTCATCACCTCCATTAGCTCGG 594645 30 100.0 40 .............................. GCAAAAGGAGTTAGGATATGCCCCAACAAAGAGGGCTAAG 594575 30 100.0 37 .............................. AACCGTGGATGGATATTTCTAATCTTCTCTAAGTCTA 594508 30 100.0 36 .............................. CTTCAATACATACCTGAGACATTCAGGAGTGGTTAA 594442 30 100.0 36 .............................. CGGGGAGGCGCCGTCTTTAAGGAGTTTTGCCATCAC 594376 30 100.0 37 .............................. TGGGAATTTTTGCCTCGACCCGACCCGGTTGATAAAA 594309 30 100.0 38 .............................. ATATCTAAGTTTTGCTTATATTAGCCTCCCCCGAAAGT 594241 30 100.0 39 .............................. CGAGCTTTCCAGGTGACGTTAATCTTCATCGTCCCCACC 594172 30 100.0 38 .............................. TAAAGTGTGTGCTGATTATCACATATAGCGTGCTGAAA 594104 30 100.0 38 .............................. CTGACGGCCGTGCTCATAATGATGGTCGCGTGGCTCAT 594036 30 100.0 37 .............................. GACAAAAGAAAATTAAAGAGTTACAAAAGCATAATAG 593969 30 100.0 37 .............................. ACGGACCGCCATCGCCGTGATTACATTAGTAGCCACG 593902 30 100.0 36 .............................. ATGAACATAGAGGACCCGGCCGGTCTTATCAAGGAA 593836 30 100.0 36 .............................. CTTTCAAAAGAGAGGGGGGAGAGAAATAGTAGTGGG 593770 30 100.0 37 .............................. CTTTCTTCAACACAACCTCAACCCTTTTCTCCATCTT 593703 30 100.0 39 .............................. TCGAGGACAGATGGACAAGTTACGGCGGCGTCAGTATGT 593634 30 96.7 37 .................A............ TAAAGGTTCCGTCCCCGAATAACGCCATTTCCTCCAT 593567 30 96.7 37 .................A............ GCCCTTAAAGCCTACAAAGAAATAAGAAGCTCAATGA 593500 30 96.7 96 .................A............ AGTGCGTCGGCTATGCTCTTTATGATGCTACCGAATACGTTCCAATAATCCTCAAGATAACATGAGAACCTTAAGGGGGGAAGTTAACCGGCATCC 593374 30 80.0 0 CCC....GG................A.... | ========== ====== ====== ====== ============================== ================================================================================================ ================== 29 30 99.0 39 GTTCCAATAAGACTCCAGGAGAATTGAAAG # Left flank : ATTTTGTAAAAACATGTGGTGAAGGTTTTTCTTTACTCGTTGTGGAGGACTTTTATCGGGTTTGGGGTTCTGAAGGGGGTTCTTTTTCGATTCCGGAGTTTTTCAGGGGTCTGGAAGCCTTTAGTAACGAAAAGTTATCATCAAACGGAAAGTTATAAAATTTTAAGTTTTTGTAACGAAATTTTTTCGAAGTTCTGGGAGGAGGGCTTTCAGGGGAGCTTTTATGCATTCTCCCAGTGGAAATCGTATCTTTTTGATTTTCGAGGTTTTTAAGGGTTTTATTTTTGTTTTAGTTCTCCCGGAAAGCTTGGGAAGTCTCGTGGACGCTTTTGTTCATGGTGAAGTTCGGGTTTTTTGAAGGGTTCAAGGGTTCTGAAAAATTACAGAACGGCCCGAATTTGGGGCTTTTTAGGGAGTTTTTATTGACCCTTCACCGAAAGGCTTTTATAATTCGAGAGTTAACAGGGTATTGCTGGATAAACAGGACAAAATCCCCGCCT # Right flank : AGGATCTCGTTTAACCTGTCTTCCTCTATGGCCTCCCTTATCTCCCGGGCTATCCTCCTCCCCGTGCTCATGGGTTCGTCATACCTCAACCACGTGTATGGGGAACCGTGGATGAACGGATTCGTCCCCGCCACTATTCTGGCGGAGATTTCGAAGACTACGAACTCCATCTCCTCGGTTATGACCCCCTCAAGACAGAAGGGTCCCCAGAGTCCGCCCATCAACCTGCCGGCGGTTTCTACGATTCTCTCGCCGGCCTCTATGACCTCCATGAGGAGGCTCTCCCTTAGAACTAGGGGAATGTTTCCCACGACGGTGTAGCTGGGCTCTATTCCGATTTTTAGCTGCTGCCCGGCATCTATCCGCCCTATCGCATCCGCGTTGCTTTCGTACCTTTTATCAACGCTCATGAGCTCGAGTTCTTCGTTGAGCTTCGAGTAGAAGAAGTGGGGATAAACCGGAACCCCTACGACGTACTCCTGTATCTGAACTTTCCCAAG # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCCAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 649108-649874 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015104.1 Thermococcus sp. P6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 649108 30 96.7 39 .................G............ AAAACCGAAAAATCAAAGGCGCCCTCGTCGATTATTATC 649177 30 96.7 37 .................G............ GTAACTATTTCAATTTCAAGAATTTTTTCGAGACCTA 649244 30 96.7 38 .............................C TGGCTAAGGTTTCAAATATTGGTAATCCCCACGCTTCG 649312 30 100.0 38 .............................. GACGTAAATGTTTTTTGTATCCAACCTGCCGAGTCTAT 649380 30 100.0 35 .............................. CTGTTTTTAAATCTATCCGTTCACGGCGCATTTTT 649445 30 100.0 37 .............................. GGCTGTTCATTGGTGTTCGGGATTGTTCATTATTGTA 649512 30 100.0 36 .............................. GAAGATAGGGGGTGGAAAGAGATGAGGGATTGGGAT 649578 30 100.0 37 .............................. ATCACTATGGGGCCCACGAGGGTGTGAGGCCCAGCGC 649645 30 100.0 36 .............................. TCTGGAAGGATTGGAGAGCGGGGCTGGTCGATTAAG 649711 30 96.7 37 ......G....................... TTAGAAGCTTCTTATCAAGCTTAAACGCCGGTTCAGT 649778 30 100.0 37 .............................. AACGAGAAGTATTCTAAATAAACTGTAATTCCCTTGT 649845 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ======================================= ================== 12 30 98.6 37 GTTCCAATAAGACTCTAAGAGAATTGAAAG # Left flank : GGGGCATCAGGTGGACGACGCGCTGGCTGTATTCTGCCTTCACCTGCATAACGTACTTATCCCCAAGGACCCTGACAACTTCCACGGCGCTCTTCCTCTCCTCGTACTCCGCGGCTATTAGTTCTATCAGCTTCTCAAGGTAATCGAGGGACCTTATCCCGAGGGCCTTTGAAAGCTCCTTCAGGCTGAGCGGTCTTCCGGAAACGAAGAGCGCGGCCTCGACGAGCGCCTTGTCCTCAATGAGTCCCATGGCAATCACCACCGTAGGTTCACACAGGTTCTTATAGGGTTTACCCCCCGAAGGTTTTTCTTTACTCGTTGTGGAGGACTTTTATCGGGTTTGGGGTTTTGAAGGAGGTTCTTTTTTGGATTCCGAAAAATTACAGAACGGCCCGAATCGAGGGCTTTTTAGGGAGTTTTTATTGACTCCTCACCGAAAGGCTTTTATAATTCGGGGTTCATTAGAGTATTACTGAGGAAACAAAGCAAAATTCCCTCCT # Right flank : CCCCTCCGGTTCATCCCCGGGTCAGCAAACCCGCTTCTGGTGGGGACCTCTGGGGCCCGCGGACATCGTTTCCCGGACTGTTATCCCGTAGCTTCGGGTTATTTACGGGCTTCTTAGCGGATTTCTGGAGAAAAAGTTTTTAAACCAATCATTCAAACATGGGAAGCCCCAGAGCGGGGCGGTGATGGATATGTACCCCCCAAAGAAGAAGGTAAGGCCCAGAGTTGAGGAAGAGGAGGAGTTCGACCCACTCAGAGAAGTCGAGGAAGCCTATGAGAACGAGTGGGAAGAAGACGAGGAATGGGAAGAGGACTGGGAAGAAGAGGAAGAGGACTGGGACCTCGACGAGGATGAGGAAGACTGGGACATAGATGATGACGAGGAGTGACTCCTCTTCCTCCTTACACTCTCTCTCTTGCCCCTTTTCTTCCCTTCTTCTGGAAGGTGGGAGCCTTGAGACAGCGCCCCCGGAAGAGAAAGAAGGCAACGCTAAAAAGCAT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 3 668387-669356 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015104.1 Thermococcus sp. P6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 668387 30 100.0 35 .............................. AAAAGCCACCCCTGAAGCACCAGGGGTTTGGGGGG 668452 30 100.0 39 .............................. TGAGCCGGGCGTGGATGTGCCCCTGAACTTCTCCGCCGA 668521 30 100.0 37 .............................. ATCATTAAGGTCTACGATGCCTCGACGTATGAGGATA 668588 30 100.0 37 .............................. GTCGATGTAAACGATAGCGTTAAGGTCAACTCCTGAG 668655 30 100.0 36 .............................. CCTGCTCGGGAGGGTCAAGCATGTAACAGTTCACCT 668721 30 100.0 37 .............................. TAACTTCTTCTTCAATTTCGGGGCTTAATTGAACCCC 668788 30 100.0 36 .............................. TCGTTTACATAGACCGCGGTATGGTAGTGTTCACCA 668854 30 100.0 37 .............................. AAAGAGCGTAAAAACTTTAATAACAGTGCTTTACAGT 668921 30 100.0 37 .............................. TTCTTAATATCGATTGTGATGTTATAGAGCAGGGTGT 668988 30 100.0 38 .............................. TGCTATCACCACCTGAACTATTGAGACTATAATAAGGG 669056 30 100.0 39 .............................. TTTTTATCTCCTCTTCTACACGACAAACTATATAAACAG 669125 30 100.0 37 .............................. ATCGCAACACCGTTTAACATGTTGTGGTGAAAGTGCG 669192 30 100.0 35 .............................. TTGACACGTCAAAGACGTATAACACTTACTTGAGC 669257 30 100.0 38 .............................. GTAGGCCTCCTCCCGGTGGATGGGCCTCGGGGTATTTA 669325 30 90.0 0 .......................A.A...C | C,G [669348,669353] ========== ====== ====== ====== ============================== ======================================= ================== 15 30 99.3 37 GTTCCAATAAGACTCCAAGAGAATTGAAAG # Left flank : TCTTATAAAAACATGATGCTGAAGGTTTTTCGTTACTCGCTTTGAGAGGTTCTTATCGGGTTTGGGGTTTTGGAGGGGGTTCTTTTTTGGTTTTGGGGTTTTTGGAGCTTTTGGAAGTCTTTAGTAATGAAAAGTTATCATCTAACAGAAAGTTATAAAAACTTGAGTTTTTGTTACGAATTTTTTTCGAAGTTCTGGGAGGGGGGCTTTCGAGGGAGCTTTTATGCATTCTCCCCGTGGAAAGCGTGTCTTTTAGATTTTCGAGATGTTTAAAAGCTTTGTTTTTGTTTTACTCCTCTCGGAAAGCTTGGGAAGTCTCGTGGACGTTTTTGTGCATGGTGAAATTCGGGCTTTTTGAGGGGTTCAAGGGTTCTGAAGGACTACAAGATAGCTTGAATCAGGGGCTTTTTGGGGAGTTTTTATTGACCCCTCACCGAAAGGCTTTTATAATTCGAGGGTTAACAGGGTATTGCTGGATAAACAGGACAAAATTCCCGCCG # Right flank : CCCTAAGGGGGGAGTGGACTGGTATCCCCCGCCCAAAGCTTCTTTCATAGCGGTTGAAGTTTCCGGTGCTCTGGGTGATGTTCTCAGGGGGATCTCCTCCCCCAGCGGACGTTCGCCGTGAGGACCCTCTCCGTGGAGAAGAGCCGGGCCGTCGCGTAGAGTATCGCAACCGCGATAAGGCCCAGATACAGGATGCTCGCCCCCATGGAACCGTAATCGCTCAGGAGCACGTGCCTGTAATCAACAACCGGATGCGTGAAGGGTATCGCCAGCAGCAGGTACCTGAAGGCCACCGGAAGGTCGTTGATGTCGGTGTACATCAGCAGGAAGGCCGGGAAGGCGAGCGGGAGCACAACGGCACTGACGAGGCTTGTGGCGGTCTGGACGTCCTCCGCGAAGGTGGCCACTATCATGGCAAGGCTCAGGGCGATTATTATCGTCAGGAAGACGACGAGCGAGAACATCAGCGCCCCGAGGGGGGTAATGCTCAGCCCGAGGTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCCAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 4 1197136-1199380 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015104.1 Thermococcus sp. P6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 1197136 30 100.0 36 .............................. TCGGTCTATGTACGACGTCAAAATATATATAGTTTT 1197202 30 100.0 38 .............................. GAGCCTTCCGGAAATCCCTCTCCTTTGTATACTTCATT 1197270 30 100.0 37 .............................. TCCCCTCCTTCCGTCGGAACCTTATAACTCAAGGAAA 1197337 30 100.0 37 .............................. ACCGTCTCGAGAATAAGCACGGCGTGGAGCTATGTAA 1197404 30 100.0 36 .............................. ACTACCATCACTATACCGGTTATAATGGCGTTTCCC 1197470 30 100.0 36 .............................. TGGCTCTAGCCTATAATCCCCATCCTCGACGATAAG 1197536 30 100.0 36 .............................. GCAAGCACAAGATAAGAGTATAGCTACTCCTGATAT 1197602 30 100.0 38 .............................. CAAAGATAAGCGGAGATGGTGCGGGCTTTATGATGCTG 1197670 30 100.0 36 .............................. GAATTCTTGAAACACTCAAAACGTGGTTTTCGACAA 1197736 30 100.0 36 .............................. TATGTGTTCTTTTTCCGTCCTCGTAGAATCTAATTC 1197802 30 100.0 37 .............................. GCAATGATAATATTCCAGATTGCCTTAATTCCGGGGC 1197869 30 100.0 36 .............................. AATAAACCCGAATGACCTATACCCCCACTACCCGAA 1197935 30 100.0 36 .............................. AGGGGGGCCGTGGTTACCTCGAGTTAATAGACGCCG 1198001 30 100.0 36 .............................. CGACTAATGAACTACATCGACGGCATGGAGGTTATT 1198067 30 100.0 37 .............................. GTAACTTTTTAGAGACAGTCCGAGGTGGTGCGCAACG 1198134 30 100.0 39 .............................. CGCTTTTTTTTATGTGGCTTTTTAGATGCTCTTAACATC 1198203 30 100.0 37 .............................. CCAAAGTGGCTTGCTAAGGAATATGAAAAGATATCTC 1198270 30 100.0 37 .............................. AGGAAATAAACATTCTGTTTATCTTCATAGAGGGTAT 1198337 30 100.0 37 .............................. AGGTATATGGGGAGTATACAGTCTTAGTTGAAGAACT 1198404 30 100.0 37 .............................. GTTATCTTAATTTAATATAGGATATTAAGCTTATGGC 1198471 30 100.0 37 .............................. TACTATGGCTATGTAGTCGCTAATTACTTTTATCTCC 1198538 30 100.0 36 .............................. GAAAGCACACCCCCGTATAGCTGCAAAAGTTATAAA 1198604 30 100.0 47 .............................. TCATCAATAGGAAGAGATTTCCAATCGTCCAAAGGAAATTTATCATC 1198681 30 100.0 37 .............................. AGATCATGGGGGATAATATGGTATTCGTCGTTAAACT 1198748 30 100.0 37 .............................. AGCTCTCTTATAGCGTTCTCTACTTTATATGTTGGGG 1198815 30 100.0 37 .............................. TTATAATAAAACTTCACCATGCTACCGTGGTGGTAGT 1198882 30 100.0 34 .............................. ATAAAATAAGATAAACTATAAAATTAACGCTTAA 1198946 30 100.0 38 .............................. CTTTCCTGGTGATTGGCTCGATCGCAATGCTCGCAATG 1199014 30 100.0 37 .............................. AGAATTAGTCGTTAGTTGAGTTGATGCCCTCGCTTTT 1199081 30 96.7 40 .............................C GTGGTAGTGAACTTAAGGGAAGCAGGGAGGATAAGGGAAA 1199151 30 100.0 37 .............................. GCGATTTCGTCATATATCTTTATGCTTTAAAGTTTAA 1199218 30 96.7 38 ...............C.............. GGCTGGTGGATTGAACCGGCCGTCAATAATTTTCTTAA 1199286 30 80.0 35 .....G..................G.GGGA ACTTTAAGGGGGGAGTGGGGGATGTTTCATCCCCC 1199351 30 96.7 0 C............................. | ========== ====== ====== ====== ============================== =============================================== ================== 34 30 99.1 37 GTTCCAATAAGACTCTAAGAGAATTGAAAG # Left flank : GTACTTACGTTTAACCTTTTCGAAGGTTTTTCGTTACTCGCTTTGAGAGGTTCTTATCGGGTTTGGGGTTCTGAAGGAGGTTCTTTTTCGATTCTGGGGTTTTTCAGGAGTCTGGAAGTCTTTAGTAATGAAAAGTTATCATCTAACAGAAAGTTATAAAATTTTAAGTTTTTGTTACGAATTTTTTCGAAGTTCTGGGAGGAGGGCTTTCAGGGGAGCTTTTATGCATTCTCCCAGTGGAAATCGTGTCTTTTTGATTTTTGAGGTGTTTAAAGGTTTTATTTTTGTTTTACTCCTCTCGGAAAGCTTGGGAAGTCTCGTGGACGTTTTTGTTCATGGTGAAATCCGGGTTTTTTAAAGGGTTCAACGGTTCTGGGAGACCACACGATGACCCGAATTGGGGGCTTTTTAGGGAGTTTTTATTGACCCTTCACCGAAAGGCTTTTATAGTTCCGGCTCTCATATAACGTTGTTAGGAAAATGGGGCAAAAATCCGGCCT # Right flank : GTAGGGCAATGCGTTTCGCTCATTTTTGTGCTGTTCTACTGTAATTTAGCATCGTTTGGTACAAGAGCTACCTCCAATTGAAAGGTGCACCGGGAAAAACTCTAAATATCTCTTCCCTTGAATAGTTTTGGTGTTGGACATGGAACTCTATGACGTCAATGAGTTCTGGAAATTTGACCTTAGAGTTGGTCTTGTTAAGAAAGCTGAAAAGTTAAGGAGAACTAAAAAGCTCATAAAGCTCGAGGTAGATTTTGGAAGTGAACAGAGGACTGTAATCACCGGTTTAGCAGATCAATACGCTCCAGAGGAGCTGGAAGATAAAAAATTCATTTTTGTTTTAAATTTAAAGCCCAAGAAACTTTCGGGGATAGAAAGTCGGGGAATGCTTGTAGTTGCTGAAAGTGAAGATGGGAAGGTTTACCTCCTTCCGGTTCCCGATGAAGTGCCGGTAGGAACGAAGGTGTGGTAGATGCTGTTTGGAATCGCCGGGGTCCATCCAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTCTAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 5 1238605-1239376 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015104.1 Thermococcus sp. P6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 1238605 29 86.2 36 ................A.....CG...G. ACTTTAAGGGGGGAGTGGGGGATGTTCCATCCCCCC T [1238620] 1238671 29 96.6 38 ................A............ GTGGCAAGACGCAAATCCTACCCCCGGGTGAGGATGGG 1238738 29 96.6 38 ................A............ TAGGCCCAGACGAAGAGCTCATCGCCGGTTATGGAACG 1238805 29 96.6 41 ................A............ GAATTTTGCGTTAGAACTCTTTAAGACCCAGTGCTCCCCGG 1238875 29 96.6 37 ................A............ TTATCGAACTGTTGCATAACTTCCTTGGCTTCCTGAG 1238941 29 100.0 39 ............................. TTTTCTTTCTCTTTCCGAATCCGAACATCACGATCACCG 1239009 29 100.0 40 ............................. TATGCTTAAGACCTCCCCCACTGCTCCAGCTCCCACCACG 1239078 29 100.0 38 ............................. TTCGGTTATAGGAGAGAACCAAAAGTCCGGGTTTTGGG 1239145 29 100.0 38 ............................. GACGTCACTTCTGCGTATCTTATGGTGTTTTTGGTCTG 1239212 29 79.3 35 ...............C......GC..GGA CTTTAAGGGGGGAGTGGGGGATGAAACATCCCCCC C,C [1239225,1239234] 1239278 29 100.0 38 ............................. AGCTCCTCTATGGTCTCTGCCACAAGAGCCCTGTTCAG 1239345 29 86.2 0 ................A.....GG....C | T,G,G [1239360,1239368,1239373] ========== ====== ====== ====== ============================= ========================================= ================== 12 29 94.8 38 TTCCAATAAGACTCCAGGAGAATTGAAAG # Left flank : GTTCCGAGTGAAGTGGAAGAGGAGTGCTCCATCGAGGACCCCGAGGAGTTCGCCGTGGAGCTGGCCCGGAGGAAGGCAAGGGACGTTCATTCCCGCACGGGCGGAACCGTCATCGGGGCGGACACGGTGGTCAGCCTGAACGGAAGGATCCTTGGAAAGCCCCGGAGCAGGGAGGAGGCCTTCGAGATCCTCAAACTCCTGAGCGGAAAGGTCCATCGGGTTATAACCGGCTACTGCATAGTCCACCCCGGCGGGGAGATCTGCGGGAGCGTTGTGACGGAAGTGAAGTTCCGGGAGCTCGACGACGGGCTGATAAGGGCCTACGTTGAAACCGGCGAACCCATGGACAAGGCCGGGGCCTACGCGATACAGGGCAGGGCGGCGCTCTTCGTCGAGTGGATCAGGGGGGACTATTACAACGTCGTTGGTCTGCCGGTTGAAGTCGTGTGGAAGCTGCGGGACCTCGGGTTCAACGTTCTTCGGGGATGAGCTTCCCCGAG # Right flank : CTTTAAGGGGGGAGTGGGGGATGGAACATCCCCCCATCCGGCGGGACTCAGGGAGGATTGAAAGATAAGCTTAAAGGAACTCCTCGAAGAGCAGGTCCTCCTTCTTTCCCCCGGCCCTCCTGAATACCTTCTCGCTCCAAGAAACCCGCCCGACTTCCCGGGGGCTGTGGGCGTCGCTCGCGAAGGTCAGCTTAACCCCCTGCCTCACGCACTCCCTTACGAACTCCGCCTCCGGGGCGCGGTAGCTGGAGTTTATCTCGAAGGCCTTTCCCCTTTCTCCGGCCAGTTTCACGAGCTCCATCAGGCTCTCCCGGTCGGGGTAGCCTATCCTTGAAAAACTCGCCCCGAAGTGCCCGATGATGTCAACGTTCTCATCTAAGATGGCCATCTTCACGAGCTCGACGTATTCCATCGGGTCGTTCAGCCACAGATGAACGCTGGCTATCACGTAGTCCAGCCTTCTGGCCATCTCCTGCGTTATGTCAACGCCGTTCCGGGTT # Questionable array : NO Score: 8.83 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCAATAAGACTCCAGGAGAATTGAAAG # Alternate repeat : TTCCAATAAGACTCCAAGAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //