Array 1 40911-39480 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGLN01000038.1 Escherichia coli strain TUM15926, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40910 29 100.0 32 ............................. GGTATGAATCCTTTCCCTGGTTTATTAAACGT 40849 29 100.0 32 ............................. CCAAATAGTCCCCAACATCCTGCCGTAAATAT 40788 29 100.0 32 ............................. TGCGGGGAGTGAGTTGTATGACTAGCACGCCC 40727 29 100.0 32 ............................. TGATTGTCATAATAATGAGGTTCCAAGTATGG 40666 29 100.0 32 ............................. TTGTGGTATACGACAACTACGTAACTCCCGAG 40605 29 100.0 32 ............................. GCGTTGCCGAGGTATTTGTGAGTGGCGTCGGC 40544 29 100.0 32 ............................. TCAGCAGCTTGTTTTGCTTTTTCTATCAGGTC 40483 29 100.0 32 ............................. TAATCGAGGATTCGATCGCCATCGCAATGATG 40422 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40361 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40300 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 40239 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40178 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 40117 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 40056 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39995 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39934 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39873 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39812 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39752 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39691 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 39630 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39569 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39508 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1542-171 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGLN01000041.1 Escherichia coli strain TUM15926, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1541 29 100.0 32 ............................. TACCTGCTTAATACATTGCGGGTTAACGTTCT 1480 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 1419 29 100.0 32 ............................. ATCCCCCGGTTATTGACCCCAAAACTGGTGAG 1358 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 1297 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 1236 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1175 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1114 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 1053 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 992 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 931 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 870 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 809 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 748 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 687 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 626 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 565 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 504 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 443 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 382 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 321 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 260 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 199 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //